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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                           ------->MYC2
                                           <-------MYC2
                                           <-------MYC3
                                           ------->PIF4
                                  <---------ANAC55(2)
                        -------->HAHB4     <-------PIF4
                        --------->ATHB12   ------->MYC3
                        <---------ICU4     <-------MYC4
                       <---------YAB1      <-------PIF5
                       <---------ATHB12    ------->MYC4
                       --------->ICU4      ------->PIF5
                      <---------TOE2(3)  ------->TEIL     ----------->GT1  ----------->GT1    ------
 ------->TEIL   <------ZmHOX2a(1)--------->MYB59  --------->ARR11(3)  ------>ZmHOX2a(1)   <---------
 
aatgaatattagattagtaggagctaatgatggagttaagtatgcacgtgtaagaactgggaagtgaaacctcctgtatggtgaagaaactatacaacaa  4488300
                                                    --------->ARR14(2)
                                                    ------->TEIL
                                                    <---------ARR14(2)
                                                   <---------CCA1(2)
               --------->ANAC46                    <---------ARR14(1)
               --------->ANAC55(2)               <---------ANAC55(1)
               <---------ANAC55(2)               <---------ANAC58
               --------->ANAC55(1)               <---------ANAC58                            -------
            --------->ARR14(2)                   <---------ANAC55(2)                        --------
            <---------ARR14(2)                   --------->ANAC55(2)       --------->ARR11(3)<------
       <------MYB46(1)                           --------->ANAC55(1)       <---------ARR11(3)-------
       <------MYB83                              --------->ANAC58         <---------CCA1(2) --------
   <-----------RAV1(1)          <----------DOF2  --------->ANAC58      --------->AHL20(1)<---------ICU4
   <---------MYB46(3)<---------AHL20(2)         <-------TEIL           <---------AHL20(1)<---------AHL20(2)
 <---------MYB52(1) <---------AHL20(2)    --------->ANAC58         <---------ICU4  --------->YAB1
 <----------DOF2    --------->AHL20(2)    --------->ANAC46         <---------AHL20(2) --------->YAB1
---->DOF2<---------ANAC46 <---------YAB1  --------->ANAC58        --------->AHL20(2) <---------YAB1
-ID1  <---------AtMYB61 <---------ICU4--------->YAB1<---------ARR11(1)--------->AHL20(2)--------->AHL20(2)
 
agccctttgttggtgtatacgtattaatttttattcttttatcacaagcgatacgtatcttaagacataataaatatatatcttactcataataaatatc  4488400
                                                                                              ------
        <-----------GT1                                                                --------->WOX13(1)
  --------->CCA1(2)                                                                  --------->AHL20(2)
 <---------ARR11(3)                <---------AHL20(2)                   <-----------RAV1(1)  <------
 --------->ARR11(3)        --------->AHL20(2)                           <---------REM1(1)<---------ATHB12
-->ARR11(3)                <---------AHL20(2)                           <---------MYB46(3) ---------
->CCA1(1)     --------->ZAT14  <---------AHL20(2)       <---------AHL20(2)        <---------AHL20(1)
---ARR11(3)   <---------ZAT14 --------->AHL20(2)        --------->AHL20(2)        --------->AHL20(1)
-->AHL20(1)   --------->ARR14(2)  --------->AHL20(2)   --------->AHL20(2)        --------->AHL20(2)
->RVE1(1)     <---------ARR14(2)--------->YAB1 ----------->GT1    <---------MYB46(3) <---------AHL20(2)
 
ttaagatatatatacagtatacacctgtatatatataataaataggcatatagtagaaattaatatgagttgttgttgttgcaaatatataaatcaatca  4488500
                                                                                                   <
                                                                                              ------
                                                                                             <------ZmHOX2a(2)
                                                                                            --------
                                                                                            --------
                                                                                            <-------
                                                                                            <-------
                                                                                            <-------
                               --------->MYB52(1)                                           --------
                <---------ATHB12 ----------->GT1                      --------->ZAT18       <-------
           ------>MYB83      <---------MYB52(2)                    --------->DAG2          <--------
 --------->CCA1(2)          --------->ANAC58               ----------->RAV1(1)            ----------
<---------ARR11(3)          <---------ANAC55(2)           --------->MYB46(3)           <---------ANAC55(2)
--------->ARR11(3)   --------->YAB1      --------->DAG2 <---------ARR14(2)             <---------O2-
--->YAB1   ------>MYB46(1)  --------->ANAC58   --------->ANAC58   --------->DAG2       --------->ANAC58
---ATHB12 --------->ANAC46<--------P    ---------->DOF2 --------->ARR14(2)   --------->MYB46(3)    -
>WOX13(1)--------->MYB46(3) --------->ANAC55(2)--------->ANAC58  ---------->DOF2       --------->ANAC58
 
aaagatttaaaacccaccattcaatcttggtaagtaacgaaaaaaaagggaagcaagaagaaccacagaaaagggggctaacaactagacacgtagatct  4488600
---------At4g35610     <---------ALFIN1
>ZmHOX2a(2)           --------->ZAT14                                                            ---
->ARR14(3)            <---------ZAT18                                                            ---
->ARR11(3)           --------->AtMYB61               ----------->GT1                           <----
--ARR14(3)           <---------ALFIN1         <-----------HVH21                                <----
--AGP1             -------->P                ----------->HVH21                                 <----
--ARR14(2)         ------>MYB46(1)          --------->LBD16                                   ------
->ARR14(2)       --------->TOE1(2)         <---------ANAC58                                   ------
--ARR11(3)       <---------MYB111(1)       --------->ANAC55(2)                           --------->ARR14(2)
-CCA1(2)         <---------MYB59           <---------ANAC58                  <---------MYB52(1)<----
->ARR10     <---------MYB52(2)            <---------LBD16                   --------->LBD16   ------
-------->At4g35610 ------>MYB83         <-----------GT1        --------->At4g35610       <---------ARR14(2)
---------->RAV1(2)--------->MYB55(1)<----------DOF2<---------MYB52(1)     <---------LBD16*TSS ------
 
tcatctgcccgtccatctaacctaccacactctcatcttctttttcccgtgtcagtttgttatataagctctcactctccggtatatttccaaatacacc  4488700
                      --------->TOE2(3)
         --------->ZAT18
         <---------ZAT14
         --------->ZAT14
     <---------------AtSPL8
     --------------->AtSPL8                                            <---------At4g35610
--->MYB83<---------ZAT18                                               <------MYB46(1)
--->MYB46(1)         --------->REM1(1)                                <---------MYB46(3)
-----MYB59  --------->ANAC46                                          <---------DEAR3(1)
-----MYB111(2)     ----------->RAV1(1)                               <---------ANAC58
-----MYB46(2)----------->RAV1(1)                                     <---------ANAC58
--->ANAC58--------->ANAC58                         <---------ZAT14   <---------ANAC46
--->ANAC58--------->ANAC46                      <---------ANAC46   <---------MYB46(3)
-----MYB111(1)  ------->GAMYB                 <------MYB83--------->YAB1
--->ANAC55(1)--------->MYB52(1)             <--------P   <---------YAB1<------MYB83          <------ZmHOX2a(2)
--->ANAC46--------->ANAC58      --------->YAB1<------MYB46(1)--------->YAB1       <----------DOF2
 
taacttgtttagtacacaacagcaacatcaaactctaataaacccaagttggtgtatactataatggtgatggctggtgcttcttctttggatgagatca  4488800
                         --------->ANAC58                                           ------>ZmHOX2a(1)
                      --------->ZAT2                                            --------->GLK1(2)
                  ------->TEIL                                  ------->MYC3    --------->ARR14(2)
               <---------WOX13(1)                               <-------MYC3    <---------ARR14(2)
            ----------->HVH21                                   ------->MYC2    --------->ARR11(3)
          <---------ZAT2 --------->ANAC58             --------->LBD16      --------->LBD16
          --------->At4g35610                     -------->P    <-------MYC2<------NtERF2          -
          <---------At4g35610                 <---------At4g35610        <---------LBD16          --
   xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->At4g35610     <-----------RAV1(2)       <---
 
gacaggctcagagagctgatggacctgcaggcatcttggctattggcactgctaaccctgagaaccatgtgcttcaggcggagtatcctgactactactt  4488900
            --------->ZAT14
            <---------ZAT14
       ------>MYB46(1)
       ------>MYB83 <---------WRKY18(1)
      --------->MYB52(1) ------>MYB83
      ----------->RAV1(1)------>MYB46(1)              ------->TEIL
     --------->AtMYB61--------->DEAR3(2)          ------->MYC3
     --------->MYB46(3)<---------MYB59            <-------MYC3                               <------
-------->ANAC46    ----------->HVH21              <-------MYC2                               -------
------->LBD16    <---------ANAC55(2)     ---------->DOF2                 <----------DOF2    <-------
------LBD16 <---------ZAT18--------->AtMYB61      ------->MYC2  <-----------GT1    <----------DOF2
 
ccgcatcaccaacagtgaacacatgaccgacctcaaggagaagttcaagcgcatgtgtacgtcttattaacttctactttcatttcctttggcatatatc  4489000
                                                                           --------->MYB52(1)
                                                                        <---------At4g35610
                                                                        ----------->RAV1(2)
                                                                        --------->At4g35610
                                                                       ------->TEIL
                                                                     <-------TEIL
                                                                    --------->ANAC58
                                                                    --------->ANAC58
                                                              <-----------HVH21
                                                              <-----------TGA1
                                                             --------->bZIP60(2)
                                               <---------ETT(2)    ------->MYC3
                                        ------>NtERF2        --------->O2 ----------->HVH21
                                       <----------ID1        --------->ANAC58               --------
                                       ----------->HVH21     --------->ANAC46               --------
                                       <---------ETT(2)      --------->ANAC58            ------>ZmHOX2a(1)
                            <---------YAB1     --------->ETT(2)    <-------MYC3     --------->GLK1(1)
---ARR11(3)               <-----------GT1<------NtERF2     <---------DOF5.7(2)      <---------GLK1(1)
-->ARR11(3)  <---------At4g35610     --------->ANAC46     --------->ARR14(2)      <------ZmHOX2a(1)
--CCA1(2)    --------->At4g35610   <-----------RAV1(2)    <---------ARR14(2) <---------ANAC46
 
ttcattcacatagtttagctaacaagtatttactattcacaggcgacaagtcgacaattcggaaacgtcacatgcatctgacggaggaattcctcaagga  4489100
                 <---------AtLEC2
             <---------ANAC58
             <---------ANAC58
            --------->At4g35610
            <---------At4g35610
       <---------TGA1a
       --------->TGA1a
      ------->MYC3
      <-------MYC3                                     <---------AtMYB61
     --------->TGA1a                                --------->ALFIN1
     <---------TGA1a                         <------ZmHOX2a(1)                      --------->At4g35610
   <---------ALFIN1                         --------->ANAC58           <---------ZAT2       --------
 ----------->RAV1(1)                   ----------->HVH21<---------MYB46(3)       ---------->DOF2
->ANAC58------->MYC3          <---------LBD16xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)---------->DOF2
->ANAC58<-------MYC3      ------>ZmHOX2a(1) --------->ANAC58           --------->ZAT2  <------NtERF2
 
aaacccacacatgtgtgcttacatggctccttctctggacaccagacaggacatcgtggtggtcgaagtccctaagctaggcaaagaagcggcagtgaag  4489200
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AGI:  At5g13930.1   
Description:  ATCHS/CHS/TT4 (CHALCONE SYNTHASE); naringenin-chalcone synthase. Identical to Chalcone synthase (CHS) [Arabidopsis Thaliana] (GB:P13114;GB:Q43132;GB:Q940L6;GB:Q941R9); similar to chalcone and stilbene synthase family protein [Arabidopsis thaliana] (TAIR:AT4G34850.1); similar to chalcone synthase [Arabidopsis halleri] (GB:AAF23570.1); similar to chalcone synthase [Arabidopsis griffithiana] (GB:AAF23568.1); similar to chalcone synthase; CHS [Arabidopsis] (GB:AAB35812.1); contains InterPro domain Thiolase-like; (InterPro:IPR016039); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328); contains InterPro dom
Range:  from: 4488690    to: 4490266    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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