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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                          <------ZmHOX2a(2)
---------ZAT18                                      <---------ANAC46                    --------->ICU4
-------->ZAT14                                   <---------AtMYB61               <----------DOF2
-------->ZAT18  --------->At4g35610            --------->ALFIN1               --------->ARR11(3)
----MYB52(1)  <------ZmHOX2a(1)   <---------AtLEC2<---------MYB46(3)          <---------ARR11(3)
 
tgagcactctaagaagaggagatgaagagaagtatgtgaatggaatccaagtgtggtttggatcaagaagaacattttagagttctttgaaatttttaaa  4404300
                                                                                        <---------ARR11(3)
                                                                                        --------->ARR11(3)
                                                                                        --------->AHL20(1)
                                                   --------->TOE2(3)                   <---------AHL20(2)
                                                  --------->ZAT6                 <---------AHL20(2)
                                                 <---------TOE2(3)               --------->AHL20(2)
                                              <---------AHL20(2)               <---------AHL20(2)
                                              --------->AHL20(2)               --------->AHL20(2)<--
                                          --------->AHL20(2)                 <---------AHL20(2)  ---
                                          <---------YAB1  <-------TEIL       --------->AHL20(2)  ---
                                          <---------AHL20(2)               --------->AHL20(2)    <--
                                         --------->AHL20(1)                <---------AHL20(2)-------
                                 <----------DOF2<-----------GT1      ----------->GT1 --------->AHL20(2)
                             <<<<<<<<<<GT-3b xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------AHL20(2)
                    <---------TOE2(3)    <---------AHL20(1)         --------->DAG2 <---------AHL20(2)
          ------->TEIL--------->TOE2(3)  --------->AHL20(2)        ---------->DOF2 --------->AHL20(2)
 
acaagtttacatgtatatgtataaacgtttatttttcttttgaatataatttaacattagattcaaaaaaaaaagtatatatatatatatatatattcaa  4404400
                                                                        <---------YAB1
     <---------AHL20(2)                                               --------->YAB1             <--
    <---------AHL20(2)                                              <---------TOE2(3)            ---
 --------->AHL20(2)                                                 <---------ANAC55(2)         <---
<---------YAB1                     --------->YAB1             --------->ICU4                    ----
<---------AHL20(2)                 --------->ATHB51         <---------ICU4            --------->YAB1
-------AHL20(1)                    -------->ATHB1       <---------AHL20(2)           <---------YAB1
------>AHL20(2)                   --------->ICU4       <---------AHL20(2)     <---------ZAT6  ------
------>AHL20(1)           --------->ALFIN1  <---------AHL20(2)--------->AHL20(2)     <---------AHL20(2)
-------ARR11(3)           <-----------RAV1(1) <---------TOE2(3)<---------AHL20(2)   --------->AHL20(2)
-->YAB1      --------->YAB1       <---------YAB1       --------->AHL20(2)--------->YAB1      <------
 
aatattatttattgtataagaattgagaagtgttgctattattgtttttaatgaagaatttaatatttattaagtataatagtgctatataatagtataa  4404500
      <------MYB46(1)----------->GT1
      <---------ANAC46
      <------MYB83--------->ICU4                                          --------->LBD16
     --------->MYB46(2)                                                 <---------LBD16
     --------->MYB59 <---------ANAC55(2)                               ------>NtERF2
<---------ICU4  <--------HAHB4                                         --------->LBD16
-------ICU4     <---------ICU4                                ----------->GT1
------>YAB1     --------->YAB1         <---------PCF2     --------->WOX13(1)  <-------TEIL
------YAB1     <---------ATHB12       <----------ID1     --------->AHL20(2) --------->ARR14(2)
----->ICU4     --------->ICU4 <---------AHL20(2)         <---------AHL20(2) <---------ARR14(2)     -
--->YAB1       <---------YAB1--------->AHL20(2)  <---------YAB1       --------->ANAC46     ---------
---YAB1<---------MYB52(1)    <---------AHL20(2)  --------->ICU4 <---------MYB52(1)   ---------->DOF2
 
taataagttcggtagataatcattatgtaaatttaaattgtgggacaaaataatgcttaattaatcagttaatccgccggattcataccaaagaaaaaga  4404600
                                             <---------ATHB12
                                           ------>MYB83                      ------>ZmHOX2a(2)
                                           ------>MYB46(1)                  *TSS
                                         --------->AtMYB61                 <---------ARR11(3)
                                        --------->ANAC46                   --------->ARR11(3)      <
                                      --------->REM1(1)                   --------->YAB1 <---------TOE2(3)
                                  <-------GAMYB   <------ZmHOX2a(1)  ------------>CBF<----------DOF2
----------->CBF                  <---------ZAT6   ==================================HOX2a_HOX2a  <--
->DOF2                           <---------MYB46(3)    <---------ANAC46  <---------ATHB12<---------TOE1(3)
 
tgatcaattttcgaaaaaaacagtgccaaaattcgactgttacaccaaatcaaggactgagtgtatgagactcacaatgatcttaaaactttgaggttta  4404700
               <---------ANAC46
             <---------ARR11(3)
             --------->ARR11(3)                                                              -------
             --------->GLK1(2)          --------->TOE2(3)                                  <--------
             <---------ARR14(2)         --------->TOE1(3)                              <---------ANAC58
             --------->ARR14(2)         <---------MYB59                                <---------ANAC58
 <-----------GT1           <----------DOF2             <---------ALFIN1                <---------ANAC46
---------MYB52(1)        ------>ZmHOX2a(1)    --------->TOE2(3)               <---------ARR14(2)   <
-------ZAT6 <---------CCA1(2)  <-----------GT1--------->TOE1(3)  --------->ZAT14    ----------->HVH21
 
ctgttaactattcgagtatcttggagtcctcttttcactcttacctaaacctcaatcccctctctcacttctctcgcttcgaattctgtgacttgttagt  4404800
                                                                   --------->LBD16
                                                                   <------NtERF2
                                                                   ------>NtERF2
                                                                  --------->DEAR3(1)
                                                                 --------->ATERF1(1)
                                                                 <------NtERF2
                             --------->GLK1(2)                  <---------RAP2.3(1)
                            <---------GLK1(2)                   ------>NtERF2
                            <---------ARR14(2)                 <---------bZIP60(1)
                          <------MYB46(1)                      --------->bZIP60(1)           -------
                          <------MYB83                         --------->ANAC46         <---------MYB52(2)
                        <--------P                             <---------O2            --------->At4g35610
-->MYB52(2)          ------>ZmHOX2a(1)                         <---------bZIP60(2)     <---------At4g35610
-MYB52(1)          ----------->RAV1(2)                      ----------->HVH21    <---------ZAT14
-----------GT1 --------->ARR14(2)                         ----------->RAV1(2)    --------->ZAT14   <
 
tttcaccctaaaaatcccaatctcctggttggattctgggttttgacttcgacgttgctcaatctgacgccgcgttcgagctactgaagtagctaacatc  4404900
                                                                                       <------------
                                                                                       -------------
                                                        <---------YAB1                 -------------
                             --------->LBD16            --------->ICU4  <---------TOE1(3)
                    ------>ZmHOX2a(2)  <---------ARR14(2)               <---------TOE2(3)
-->TOE2(3)         <------ZmHOX2a(2)   --------->ARR14(2)--------->ATHB12  <---------TCP20      <---
----------DOF2 ------>NtERF2<---------LBD16        --------->ANAC46<----------DOF2    <-----------GT1
 
aacttttaagaacatcgctgcgatctcactcccagggatgcaaatccaaggtaagcgccatgatttagtgattttagggttccactatttccccattcag  4405000
                                                                                      ----------->HVH21
                                                                                 <---------DEAR3(2)
                                                                                 <------MYB46(1)
                                                                                 <---------MYB46(3)
                                                                                 <------MYB83
                                                                                <---------AtMYB61
                                                                                --------->MYB111(1)
       <-----------HVH21 <---------MYB59                                       <--------P  ---------
-----AGL1               --------->ANAC55(2)                                  --------->ATHB12
-->AGL15   <---------ANAC58------>MYB83                                      <---------MYB46(3)
---->AGL1  <---------ANAC58------>MYB46(1)                                  <---------YAB1 <--------
---ZmHOX2a(1)         <-----------GT1                ---------->DOF2        <---------TOE2(3)   <---
 
gacgagctactgtcccttgcctagtttacctatctataagtttgttttcatgccttcaaagtctcacagtttttggtctatggttggttctgacagatga  4405100
                                                                                         --------->ETT(2)
                                                                                         -----------
                                                                                        <---------WOX13(1)
                     --------->CCA1(2)    --------->GLK1(2)                           <---------MYB46(3)
      --------->CCA1(2)            --------->GLK1(2)                                  --------->MYB55(2)
     --------->AHL20(1)      <---------TOE2(3)        --------->HSFB2a(2)         --------->ATHB12
     <---------ARR11(3)<---------YAB1    <---------ARR14(2)                    <---------ICU4
     --------->ARR11(3)<---------AHL20(2)--------->ARR14(2)                    --------->YAB1
 ---------->DOF2   <------ZmHOX2a(1)     <---------GLK1(2)                    <---------YAB1
>At4g35610        ----------->GT1<---------HSFB2a(1)  --------->HSFC1(1)      --------->ICU4
-At4g35610     ---------->DOF2   --------->HSFB2a(1)  <---------HSFB2a(2)   --------->YAB1
------YAB1 --------->At4g35610 <------ZmHOX2a(1)--------->ARR14(2)---------->DOF2<---------YAB1
 
tgagaaaagatattagcagaaaggatataattgaggagattccatattctggttcttcgagaatggaattaaagcggagtcatcatcagtggttgacaga  4405200
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AGI:  At5g13655.1   
Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11710.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)
Range:  from: 4403093    to: 4404280    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At5g13660.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59830.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59830.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO18106.1)
Range:  from: 4404677    to: 4407178    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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