Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     ---------->DOF2                                                <---------MYB52(1)            ----------->GT1                                               --------->LBD16            <---------AHL20(2)                                              <---------------AGL15    <---------ARR11(3)                                              --------->ANAC55(2)      --------->ARR11(3)                                              --------------->AGL15    --------->AHL20(1)                                              --------->ANAC46         <---------AHL20(1)                                             ----------------->AGL1  <---------AHL20(1)                                             ----------------->AG --------->AHL20(2)                                             ========================================================   <---------At4g35610                       <-----------------AGL1  --------->AHL20(1)   --------->ZAT14             <----------DOF2<---------ANAC55(2) <---------AHL20(2)            <----   <---------ZAT14             <---------DAG2<-----------------AGL2  <---------AHL20(2)     --------- -----DAG2           --------->YAB1       <----------DOF2         --------->AHL20(1)        <-------- ------DOF2         <---------YAB1 <---------YAB1                 <---------AHL20(1)   --------->ARR11(3)   ttttctgctctggtccatggttttgataatgggccttatgaattctttccgtaatgggttttgactaataaaatattttttggtgaaaagagctagctcc  4380000                                                 <---------YAB1                                               <---------AHL20(2)                                            =========================================================                                            <---------------AGL15                                            --------------->AGL15                                   --------->ARR11(3)    <---------At5g28300                                   <---------ARR11(3)  <---------YAB1                            <-----------HVH21 --------->AHL20(2)             --------->AHL20(2)                       <-----------GT1   ------>ZmHOX2a(1)                   --------->YAB1 ===========================================================MADS_MADS      --------->AHL20(2) -----ALFIN1           <---------WRKY18(1) --------->REM1(1)               --------->AHL20(1)       - >At4g35610  <---------MYB111(1)  --------->CCA1(1)  <---------ZAT6       --------->YAB1            - -ZAT2       --------->MYB46(3)   --------->RVE1(1) <---------YAB1   ----------->GT1                -   acatttaagagagcaactactatattgaccagtcaaatatctcctacatttattagtattactgtggaatattgaaaaataatatcaagaatttagtcat  4380100               <---------CCA1(1)               <---------RVE1(1)              --------->ARR14(2)              <---------ARR11(3)              <---------ARR14(2)              --------->ARR11(3)                                                       --------->DAG2 --------------->AGL15                                                         <---------HSFB2a(2) <---------MYB59     <---------At5g28300                                       --------->HSFB2a(2) -- <---------------AGL15                                                     <-----------HVH21     ---- =================MADS_MADS       ----------->GT1                         <---------ANAC58       ---- ---------------->AGL1          ---------->DOF2      ---------->DOF2      <---------ANAC58<----------ID1 ---------------->AG<-----------GT1           ---------->DOF2         <-----------RAV1(2) ----------- ---------------->AGL2 --------->TOE2(3) ---------->DOF2            <-----------HVH21 ---------->DOF2   ttaccaaaatgagccagatattttaccgtaaacacaaagttacaaaagaaaagaagaaagagagagagagagtcaggcgttacagaaataaagggaaaaa  4380200                                                          ------->TEIL                                                         <---------CCA1(2)                         -- -------->DOF2                 ------>ZmHOX2a(1)  <-------TEIL                             <---------ALFIN1 ----->ANAC58          <---------MYB52(2)      <---------HSFC1(2)                    <---------ALFIN1 ----->ANAC58         --------->At4g35610      --------->HSFC1(2)                   ----------->HVH21 >GT1                 <---------At4g35610   ---------->DOF2                      <-----------HVH21<--   cgaaagttgcaaaattttagtaacagctaactcctgcaaacaaaacaaaagcttcgtctgtatctatctctcccttcagactcggtctcacccctacttc  4380300                                                                                                 ----                         --------->AHL20(2)                                                     <----                      --------->AHL20(2)                                                       <-----                      <---------AHL20(2)                                                       <-----                     --------->AHL20(2)                                                     ---------                     <---------AHL20(2)                                                     <--------                     --------->AHL20(1)                                                    <---------GLK1(2)        ------->GAMYB<---------AHL20(1)                                              <---------DAG2        --------->AtMYB61<---------AHL20(2)                                          <----------DOF2       --------->MYB46(3)<---------AHL20(1)                            <---------ATHB12    --------->ARR14(2) ------->ANAC46     --------->AHL20(2)  -------->P                    -------->P  <---------ALFIN1 -------------------WRI1 --------->AHL20(1)                     <---------YAB1  ----------->RAV1(1)   tccgatacaaccaaaacccaaaattaatttattcccattatcaacccatatgtttatggggttttgatgatcaaccattttgcaacacttttagatttgc  4380400                                       <---------ANAC58      ---------->DOF2                  <---------ANAC46 ----->LBD16                           <---------ANAC58 -----ANAC46                          <---------STY1(2)                                ------->MYC3 ----------------WRI1              <---------ANAC58                                    <-------MYC3 ----LBD16                 ---------->DOF2               --------->GLK1(2)          <---------ALFIN1 >CCA1(2)              <----------ID1 --------->STY1(2)  <---------ARR14(2)     <-----------HVH21 -GLK1(1)           ---------->DOF2<---------ANAC58      --------->ARR14(2)   <---------ZAT6   ggaaaaaccaaagagttgaagtgaaagaacaaagatggctagcttgaaactgggttccaaatctgaagtctttcatcttagtggtcacacatggtcagtc  4380500       <<<<<<<<<TBF1                                            <---------At4g35610    <<<<<<<<<TBF1        --------->WOX13(1)             <----------DOF2        <---------AtLEC2 <<<<<<<<<TBF1         <---------ATHB12            <---------At4g35610     <----------DOF2   ttcttcttcttcttcaatcgcttaaatcattcactaacaaaacaaaacgtttcatctccttttgtaatctgatcaggctttgcaagactggtcttaagcc  4380600                          <---------HSFB2a(1)                          --------->HSFB2a(1)                          --------->HSFC1(2)                       ---------->DOF2                     --------->ANAC58                     --------->ANAC58                <---------YAB1                               <--               <---------ANAC46          --------------->AtSPL8                                   <--            --------->ANAC46             --------------->AtSPL3                               <------         ------>ZmHOX2a(2)<---------HSFC1(2)       --------->YAB1                            --------     <---------YAB1  --------->ANAC46    --------->DAG2               <----------DOF2     <---------TOE1(2)   cgatgttatgatccaagtcgtagacgaaagcttccatctccataaggtaccaattctaatcgactcaaaactcttttgaatttctaaactcatacgttca  4380700                                                           <---------GLK1(2)           <---------ANAC58                             <---------HSFB2a(2)    <-----------GT1                                     --------->HSFB2a(2)    ====================== --------DOF2                                        --------->ARR11(3)        ----------->RAV1(2) -------DAG2                                         <---------ARR11(3)  ---------->DOF2 -TEIL     <---------ANAC58      <----------DOF2    <---------GLK1(1)  --------->At4g35610 ->DOF5.7(2)           --------->TOE2(3)            --------->GLK1(1)  <---------At4g35610   <-------   cttttttaacttgtcttgttttcaacatcagtttcctttgttgtcaagaagtggatatctagaaactctgttcagcaaagcctctgagacaacttgtgtt  4380800                          ------>ZmHOX2a(1)                    --------->ALFIN1                                                 ---------->DOF2     <-------TEIL   <---------AtMYB61                                            --------->At4g35610  <---------At4g35610--------->ABI4(2)                                      ----------->HVH21  --------->ZAT2   <---------MYB52(1)                                      <-----------HVH21  --------->At4g35610<---------MYB46(3)      <---------At4g35610          --------->bZIP60(1)  <---------ZAT2  --------->LBD16      <---------ANAC58            --------->ICU4----------->RAV1(2) ====RAV         --------->LBD16       <---------ANAC46   <---------At5g28300  <---------ALFIN1 ----RAV1(1)    <---------LBD16        <---------ANAC58  <-----------GT1 <---------TOE2(3)   gctcagcttcatgacattcccggtggtcctgaaacattcttgcttgtagctaagttttgttacggtgtaagaattgaggtcacacctgaaaacgctgtga  4380900  Previous    Next  AGI:  At5g13600.1    Description:  phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT5G03250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68937.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) Range:  from: 4380435    to: 4382500    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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