Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               <---------GLK1(2)        --------->TOE1(2)   <---------ANAC55(2)      --------->HSFB2a(2)   --------->ANAC58         <---------HSFB2a(2)   --------->ANAC58        <---------LBD16   --------->ANAC55(2)   --------->ARR14(2)   --------->ANAC46      <---------ARR14(2)  <-------TEIL        <--------HAHB4 --------->ARR14(1)   --------->YAB1                 ----------->HVH21 --------->CCA1(2)    --------->ATHB12             ----------->GT1 -------->ARR11(1)    <---------ICU4       ----------------->AGL1           --------->WOX13(1) -------->ARR14(2)   <---------ATHB12   --------->ANAC58              <---------YAB1 ---------ARR14(2) --------->WOX13(1)   --------->ANAC58 <----------DOF2  <---------ATHB12         -- -------TOE1(2) --------->TOE2(3)       --------->ANAC46<---------ANAC46 ------->TEIL             --- ---->WRI1  <------ZmHOX2a(1)--------->LBD16  ---------->DOF2      <---------AHL20(2)    --------->ZAT6   cagatacgaaactaggaatctcaatcatttccggacttatacaagcccaaaagaggtgacttttaaaaatttatgaatcattcaatggataacaccagaa  4309800                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                            ---------                                                                                            ---------                                                                                     --------->ZAT14                                                                                     <---------ZAT14                                                                                   ------>ZmHOX2a(2)                                                                                  --------->At4g35610                                                                                  --------->CCA1(2)                                                                                  <------ZmHOX2a(2)                                                                                 --------->ARR11(3)                                                                                 --------->ARR14(3) =                                                           ----------->GT1       <---------ARR11(3) -                                                <-----------GT1                  --------->ARR14(2)==                                 ------>ZmHOX2a(2)       <---------MYB52(1)      --------->AGP1   ---        <---------ATHB12       --------->ARR14(2)       --------->LBD16          <---------ARR14(2)<-      --------->WOX13(1)       <---------ARR14(2)  ------->GAMYB--------->ICU4  --------->GLK1(1) --- ------->YAB1             <---------REM1(1)  --------->YAB1<---------MYB46(3)   <---------GLK1(1) <-- -------->GT1      ---------->DOF2 --------->At4g35610<---------LBD16 ---------->DOF2--------->At4g35610   atgaaaatcaatcgagagacagaaagagttgtagatcggcagacctcttataacgctccggtggtaagaattgaaagatgagagatctgcagaggggaca  4309900                                                                              ------>ZmHOX2a(2)                                                                              =======================      --------->At4g35610                                                     =======================   ---------->DOF2                                                          --------->ARR11(3) <---------HSFB2a(2)                                                        <---------ARR11(3) --------->HSFB2a(2)                                                  <------NtERF2 <---------HSFC1(1)                                                  <-----------HVH21 -------ARR11(3)               ---------->DOF2       ================================HOX2a_HOX2a ------>AGP1           ------>NtERF2                 <------ZmHOX2a(1)<---------------------WRI1 -------AGP1         <---------ANAC58               <----------ID1   ------>NtERF2 -->HVH21            <-----------------AG        ---------->DOF2    --------->DEAR3(1) >ZAT18        <------ZmHOX2a(1)              --------->LBD16      --------->ATERF1(1) =====================HOX2a_HOX2a            <---------ANAC55(2)   --------->RAP2.3(1) ----->ZmHOX2a(2)    <-----------------AGL1  <---------ANAC46      <------NtERF2 =====================HOX2a_HOX2a            --------->ANAC55(2)  <---------ATERF1(1) ------>ARR11(3)     ----------------->AGL1  --------->O2        <---------DEAR3(1)      ----------->GT1 -----ZmHOX2a(2)     <---------ANAC58        <---------O2       --------->ATERF1(1)--------->ANAC46 ------>ARR14(2) --------->At4g35610        <---------LBD16 <------ZmHOX2a(1)<---------GLK1(1)------- -------ARR14(2)--------->ALFIN1         <-----------HVH21  =========================HOX2a_HOX2a   gatctagaagcggaagaggagttgcctccatcggaaagggtatggtcacgggaaaggacgaaggaggtcgccgtcgatgatctctgcgaaacagaaaaaa  4310000                                                                                     <---------TOE1(3)                   <---------GLK1(2)                                                 --------->DAG2                  <---------At4g35610                                           <<<<<<<<<ARR2                 <---------TOE1(2)                                         --------->ANAC58       ------>ZmHOX2a(1)    <---------------AGL15                          --------->ANAC58   ------>ZmHOX2a(1)        --------------->AGL15                          --------->ANAC46         - =============HOX2a_HOX2a <---------At4g35610                    --------->ANAC58  <---------MYB52(1) =========HOX2a_HOX2a     --------->At4g35610  --------->GLK1(2) --------->ANAC58--------->YAB1     < --->DOF2     --------->ANAC46                <---------GLK1(2)---------->DOF2  <<<<<<<<<ARR1     <--   gcctccttcctgctactcgcagcatctctgctcaaatgggttaagaccgattctagggtttcgctcaaagcaagaacacacaatcgtaaggttagagatg  4310100                                                                 <----------DOF2                                                                <---------------AGL15                                                                --------------->AGL15                                                           <---------KAN4(1)                                                           --------->GLK1(1)                                                           --------->HSFB2a(1)                                                           --------->KAN4(1)                                                           <---------GLK1(1)                                                           <----------TaMYB80                                                           <---------HSFB2a(1)                                                          <---------KAN4(2)                                                          <-----------ARR10                                                          --------->ARR11(3)                                                          --------->ARR14(2)                                                          <---------ARR11(3)                                                          ---------->TaMYB80                  <------MYB46(1)                                                          <---------ARR14(2)           ------------>CBF                                                        --------->LBD16               --------->TOE2(3)                                                       <---------ANAC46              ----------->GT1                                                       <---------ANAC58       <---------HSFC1(1)           ---------->DOF2                             <---------ANAC58       --------->HSFB2a(2) -------->At4g35610    <----------DOF2                <---------LBD16         --------->HSFC1(1) ---------At4g35610    ------>ZmHOX2a(1)     <-----------GT1--------->KAN4(2) <---------HSFB2a(2) -------------------WRI1        --------->AHL20(2) <----------DOF2  --------->YAB1  *TSS      <------MYB83   gccgatgcaaacaaaaagattagtcctttaccaaaaaaatgtttttttttcttctttgcggatattcctttaatagtcttcgagaaatcgtcaatttggt  4310200                                              --------->YAB1                                              <---------ICU4                             <---------DEAR3(1) --------->ICU4               <---------ZAT14               --------->ICU4<---------ANAC58                   -------         --------->YAB1    --------->MYB52(1)<---------YAB1<---------ANAC46     <---------ANAC58       <---------YAB1     ----------->TGA1<---------YAB1   <---------ANAC58     <---------ANAC58    <---------YAB1        ----------->HVH21--------->YAB1 <-------TEIL     <-------TEIL       -------  <-----------GT1     ------------>CBF  --------->YAB1------->TEIL--------->At4g35610   <---------YAB1   ttttttactattaatactgaagagaacaatgacggtgttctaacatgataattatgtagcttcgtggcatcttaatgttcattcgtgagtatgaataagc  4310300                             ------>MYB46(1)                             ------>MYB83                           <---------MYB59                                                   <-------                        <-----------GT1                                                  --------->DAG2                    --------->AHL20(2)          <-----------ARR10                       ---------->DOF2 -->ANAC58          <---------AHL20(2)  <---------ATHB12                            <---------HSFB2a(2) -->ANAC58         --------->AHL20(2) --------->MYB52(1)          <---------YAB1    --------->HSFB2a(2)   tacttgggcatagtttgtagatttatttaccaaattagcccaacgattcaaatctaaacaaaaacaatctcattgaaatttgatgtctcgaaaagcttta  4310400                                                                             --------->HSFB2a(2)                                                                  <---------AHL20(1)                                                                  <---------AHL20(2)                                                                  --------->AHL20(1)                                                                 --------->YAB1 <------ZmHOX2a(1)                                                            <---------ZAT2   <---------LBD16                 <---------ANAC55(2)                        <---------At4g35610--------->ZAT2       --------->ANAC58 --------->ANAC58                   --------->ANAC58  <---------HSFB2a(2)       --------->ANAC58 --------->ANAC58              --------->ALFIN1       <-----------RAV1(2)   --------->ANAC58    --------->DAG2               <---------O2<---------YAB1 <---------ZAT2<-------   --------->ANAC58   ---------->DOF2             <---------ZAT14--------->AHL20(2)   <-------TEIL ---DOF2         ----------->GT1         ---------->DOF2   --------->ANAC58 <---------LBD16  --------   tttcgaagcaaacaacaatatgtaaaaagcaaatgacaaaattcaaagggagagaagtggccagctattatattgtttcccaggagggtccatatttatt  4310500                                                                                           --------->ARR14(2)                                                     --------->ARR11(3)                    <---------ARR14(2)                                                     <---------ARR11(3)                   <------ZmHOX2a(1)                                         <---------HSFC1(2)       <-------GAMYB           --------->ATERF1(1)                                   <---------ANAC46  --------->ARR14(2)                  <---------ATERF1(1)                                  <---------LBD16    <---------GLK1(2)                  --------->ALFIN1                     --------->ANAC58    --------->HSFC1(2)      <---------MYB46(3)  --------->ANAC46                     --------->ANAC58    --------->HSFB2a(1)     --------->MYB111(2)<---------LBD16         <------NtERF2 --------->YAB1    <---------HSFB2a(1)    <--------P        <-------TEIL --AHL20(2)   --------->YAB1   <---------ANAC58      <---------ARR14(3)          <-----------HVH21 ->AHL20(2)  <-------TEIL      <---------ANAC58      --------->ARR14(3)   <---------WRKY38(1)   tgtcaattggtggcattcatcacaagcatgttttcttgggggaaatttctctcaagattttcagaggttgttgaagtcaacaggttcacggaggagcctc  4310600                    --------->ATHB12                   --------->ICU4                                       --------->ARR14(2)                   <---------YAB1                 --------->ZAT6        <---------ARR14(2)                   ------>ZmHOX2a(1)   <----------DOF2                  <---------ARR11(3)         <---------ZAT18              <---------DAG2           <---------ZAT14         --------->ZAT18           <---------ALFIN1    <---------YAB1 ----------->ARR10     <---------MYB52(1)----------->HVH21  <-----------RAV1(1)  --------->ZAT14     --------->WOX13(1)   <-----------RAV1(1)<---------WOX13(1)  <---------MYB46(3)   --------->ZAT18   <------ZmHOX2a(2)   tccatctgttgtgcccttgtcctgattgacatgtccaacaccttttgttggaactctacgattagtccaccgtagatacttggatcaatctacaaacaca  4310700  Previous    Next  AGI:  At5g13440.1    Description:  ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative. similar to ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative [Arabidopsis thaliana] (TAIR:AT5G13430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68700.1); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806); contains InterPro domain Rieske iron-sulphur protein (InterPro:IPR014349); contains InterPro domain Rieske iron-sulphur protein, C-terminal; (InterPro:IPR005805); contains InterPro domain Ubiquinol cytochrome reductase tr Range:  from: 4308132    to: 4310184    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g13450.1    Description:  ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative. Identical to ATP synthase subunit O, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q96251;GB:Q93W68;GB:Q9LYR1); similar to ATP synthase delta chain, chloroplast, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative [Arabidopsis thaliana] (TAIR:AT4G09650.1); similar to hydrogen-transporting ATP synthase [Brassica rapa] (GB:ABL97953.1); contains InterPro domain ATPase, F1 complex, OSCP/delta subunit; (InterPro:IPR000711) Range:  from: 4310317    to: 4312051    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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