Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    <------ZmHOX2a(2)           --------->AHL20(2)                                    <---------ARR11(3)         ----------->GT1                                         --------->AGP1        <---------TOE2(3)                                        --------->ARR11(3)       ---------->DOF2              <---------WOX13(1)          <---------CCA1(2) -----NtERF2                       >>>>>>>>>ARR2               ----------->ARR10 -------ZAT14                     --------->ATHB12           <---------MYB52(1)                 ----- ------>ZAT18                    <---------YAB1    <---------ATHB12------>ZmHOX2a(2)            <---- ------ANAC46                 --------->TOE2(3)--------->MYB46(3)<---------AGP1<---------AHL20(2) -----------------WRI1     <-----------GT1   <-----------GT1--------->TOE2(3)  --------->AHL20(2)   cgcagtgtttaaagtaattagataactaataacctttgattgttttataaccaataagttttcgttagatcttattccaaattatatgtttcaagtgttt  4122000                                                        --------->ARR14(2)                                                        <---------ARR14(2)                                                    <-----------RAV1(2)                             <                   ------>ZmHOX2a(1)        <---------AHL20(2)    ----------->GT1              ------    <---------REM1(1)                 ----------->GT1  <------ZmHOX2a(1)                     --------   <---------TOE2(3)          <----------DOF2  <---------YAB1    --------->ARR11(3)     ------->PIF5< ---->AHL20(2)    --------->TOE2(3)   <---------ANAC55(2)        <---------ARR11(3)     <-------PIF5< -----AHL20(2)    --------->TOE1(3)   --------->ANAC55(2)    ---------->DOF2  <----------DOF2--------   aatttgatgtaagtttttatcctaaacatgggctttaaacatgtaatttatgagtcaggataccaaagatgttattcaagctttgatgcaagtgcaagca  4122100            --------->MYB46(3)            <---------ATHB12      ------>NtERF2     <---------ATERF1(2)     --------->ATERF1(2)   ----------->RAV1(2)   <---------ZAT2   --------->ZAT2   --------->At4g35610   <---------At4g35610                                                                              < ---------ANAC46            <-----------GT1                                                    ------ --->YAB1  ------>MYB46(1)--------->CCA1(2)                                                --------->ANAC58 ->ANAC58  ------>MYB83  --------->ARR11(3)                                                --------->ANAC58 ---------ANAC58         <---------ARR11(3)                                     <----------DOF2------ ---------ANAC58   <---------YAB1          ------>ZmHOX2a(1)    <---------MYB52(1)    <----------DOF2 ->ANAC58  -------->P---------->DOF2 ------>ZmHOX2a(1)  --------->MYB46(3)<----------DOF2  --------->ANAC46   tggcctgctggccaaccatttatcaaagatataccagtcctagtcctgaacaacaacaacaactccgatagcatcactttcactttcactttcactcaag  4122200                                                                                              -------                                                                                              <------                                                                                             <------NtERF2                                                                                            ------>NtERF2                                                                                            <--------                                                                                            <--------                                                                                           <---------DEAR3(1)                                                                                        <---------TGA1a                                                                                        --------->TGA1a         --------->ETT(2)                                                               --------->ANAC46         <---------ETT(2)                                --------->DAG2                 =============    <---------At4g35610                                 ---------->DOF2                --------->SPL7 -----------RAV1(1)                                <---------YAB1               ---------->DOF2 --->ANAC58       --------->At4g35610          <----------DOF2                  ==================bZIP_DOF --->ANAC58       <---------At4g35610 <-----------HVH21 ==========================================bZIP_DOF   tcatgttgctgtcgataagtagcagcctcatacataggccggtcatactctttatcaataaagttatgttgagcccaaacaaaaaagcatacgtcggcgt  4122300   --------->YAB1 ---->GT1               ---------->DOF2 ---ANAC46       <---------DOF5.7(2)                                 <-----------GT1 -DEAR3(2)     --------->DOF5.7(2)        --------->AHL20(2)    <---------DAG2 -ORA47(2)    --------->TOE2(3)    ----------->GT1      ----------->GT1 <---------YAB1 ==================================bZIP_DOF<---------AHL20(2)   <----------DOF2            --------->YAB1   aaaaaacataacaatgcgttaatgctaaaaggcccatatgtaaaataaatcggcccatatgtaaaactttttttctgattcaaaacttataaaaaataat  4122400                                             <------NtERF2                                  ---------                                        ------->GAMYB                                       <--------                                       --------->MYB46(3)                                  --------->GLK1(1)                                       --------->DEAR3(2)                                  <---------GLK1(1)                                       <------------AtMYB77                                <---------RVE1(1)                                     ------>MYB46(1)                                      <---------ARR14(2)                                     --------->MYB52(1)                                   --------->ARR14(2)                           --------->ALFIN1  --------->At5g28300                          <---------ARR11(3)                         <---------ANAC58   <---------MYB46(3)                          --------->LBD16                         <---------ANAC58  <---------DEAR3(1)    <-----------RAV1(1)   <---------HSFB2a(2)             *TSS        <---------ANAC46 <---------ABI4(1)    ------>ZmHOX2a(2)       --------->HSFB2a(2)            <---------GLK1(2)   <-----------GT1     =================HOX2a_HOX2a  <---------ZAT2    ------->TEIL     ---------->DOF2 ------>MYB83   ------>ZmHOX2a(1)             <---------At4g35610 --------->ANAC58  --------->DOF5.7(2)-------->P    ==================HOX2a_HOX2a --------->ZAT2 --------->ANAC46 <----------DOF2  <---------MYB59------>ZmHOX2a(2)        <----------DOF2--------->ARR11(3) --------->ANAC58<---------ANAC46  <---------MYB46(2)         <------ZmHOX2a(2)   --------->At4g35610   cccacgcacatactgaatcgcgttaaagcgtgtgtaacctaaccggcggtgatcctttgttccgatcgtgttgctaactttctcagcttccagatatctc  4122500                           ---------->DOF2                                  <-------PIF5                     <-------TEIL                                           ------->PIF5                    <--------P                                             --------->At4g35610                 <---------TOE2(3)                                         --------->ZAT2--------->ANAC58           --------->GLK1(1)                                               ----------->RAV1(2)   <---       =========================HOX2a_HOX2a                               ------->TEIL   --------->ANAC58       <------ZmHOX2a(1) ------>ZmHOX2a(2)                           ---------->DOF2    --------->WOX13(1) >ARR11(3)--------->ARR11(3)            <-----------GT1         ----------->GT1       <---------ATHB12 -ARR11(3)<---------ARR11(3)       --------->ALFIN1    ----------->GT1--------->DAG2--------->WOX13(1)   tctctctgaggagatatcaaaggttgatccaaagaaggtgtttcacgttgttgaaattggataattcagaaaaaagcacctggaatcaatcactcaagag  4122600                                                                                       <---------ZAT2                                                         <---------MYB52(1)            --------->At4g35610                                                       <---------MYB46(3)             ------->TEIL                                                   <------NtERF2                      --------->GLK1(2)                                                <---------LBD16                  <------ZmHOX2a(1)           ---------->DOF2       --------->ANAC58 --------->LBD16            --------->TOE1(2)          --------->AtMYB61      --------->ANAC58--------->DEAR3(1)      <------ZmHOX2a(1)        <--         --------->MYB46(3)    ---------->DOF2--------->ANAC46         --------->ANAC58<---------At4g35610 ---ZmHOX2a(1)        --------->AHL20(2)     ------>ZmHOX2a(1)         --------->ANAC58--------->ZAT2   gagttgaaggaaccaaagccctaataaactagggaaagtaatctatcctcgccggagtcgttgtctcgccgataaggaacgaaggacgaagctgtcttcg  4122700              --------->ARR14(1)              --------->GLK1(2)              --------->CCA1(2)             <---------ARR14(2)             --------->ARR14(2)             --------->ARR11(1)             <---------GLK1(2)   --------->LBD16  <---------HSFB2a(2)                                                                   --------->ARR14(2)  <---------LBD16                   --------->ETT(2)          <---------ARR14(2)        <---------GLK1(2)  --------->HSFB2a(2)    --------->At4g35610                  --------->ARR14(2)        <---------ARR14(2) <---------LBD16         <---------At4g35610         <--------P                     <---------LBD16 -------GLK1(1)<-------TEIL         --------->WRKY38(1)----------->ARR10  <-----------GT1<---------RVE1(1)   atttccgggattgaagattcggttttgagctcaaatcgtcgactgagtaatgggggtaagttccgatttgctgattttgccaaattttcggattttttaa  4122800                                       --------->YAB1                                       -------->ATHB1                                            ----                                       <---------ICU4                                            <---                                       --------->ATHB51                                        ------                                       <--------ATHB1                                  --------->TOE1(3)                                      <---------ATHB51                             <---------ARR14(2)                                      <---------YAB1                               --------->ARR14(2)                                      --------->ICU4                            --------->ANAC58-----                            --------->ZAT18                                     <---------ANAC55(2)                          <---------------AtSPL8                                --------->ANAC46<----                          --------------->AtSPL8                        --------->YAB1 --------->TOE2(3)               <---------ARR14(2)     <---------ATHB12         <-------TEIL     --------->ANAC58-----               --------->ARR11(3)--------->ANAC46          <---------TOE2(3)   <---------LBD16-------               --------->ARR14(2)--------->ANAC58       --------->CCA1(2)     --------->MYB52(1)<----              <------ZmHOX2a(1)  --------->ANAC58     --------->YAB1  --------->AtLEC2----------->GT1         <----------DOF2 <---------ANAC46            <---------YAB1------>ZmHOX2a(2)<---------DOF5.7(2)   gttgttttgcgcttgaggaacttgattatgtgtacaagcaataattgtattgtttatgatataggttgatccattcaaaactacggaaacgttagaagcc  4122900  Previous    Next  AGI:  At5g13010.1    Description:  EMB3011 (EMBRYO DEFECTIVE 3011); RNA helicase. similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to hypothetical protein OsJ_023432 [Oryza sativa (japonica cultivar-group)] (GB:EAZ39949.1); similar to hypothetical protein OsI_025234 [Oryza sativa (indica cultivar-group)] (GB:EAZ04002.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46629.1); contains InterPro domain Region of unknown function DUF1605 (InterPro:IPR011709); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR01 Range:  from: 4122413    to: 4128864    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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