Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <-------TEIL                     <---------AHL12(1)                    <---------AHL25(3)                    --------->AHL25(2)                    <---------AHL25(2)                    <---------AHL12(2)                    <---------AHL12(1)                    --------->AHL12(3)                    <---------AHL25(1)                    --------->AHL12(1)                   --------->AHL12(3)                   --------->AHL25(1)                   <---------AHL25(1)                   <---------AHL12(3)                   --------->AHL25(2)            <-------TEIL                   --------->AHL25(3)           --------->CCA1(2)                   --------->AHL20(2)          --------->ARR11(3)           --------->YAB1                      --------->ARR11(1)          <---------ATHB12            --------->At5g28300         --------->RVE1(2)          <-----------------------TaNAC69(2)        --------->WOX13(1)  --------->ZAT6   --------->DOF5.7(1)       --------->DOF5.7(1)    <---------GATA12--------->AHL25(1)--------->LBD16                --------->DOF5.7(1)           --    --------->RVE1(2)--------->AHL12(1)    ---------->DOF2           ---------->DOF2          ------- -->MYB46(3)       <---------AHL25(2)----------->GT1            XXXXXXXXXXXXXXXXXXX>MIR156H   -------   attcaaaatccaatcaaaaaaaaaaattcatcactaaaaccgtgaaaaagatacagactccaactacaaaaaaaagagagcaattttagggctatgaagc  4053100                                        <---------O2                                        --------->TGA1a                                        <---------TGA1a                                  --------->RVE1(2)                                  --------->ARR11(3)                                  <---------ARR11(3)                                  <---------GATA12                                 <---------GLK1(2)         --------->AtLEC2   ----------->RAV1(1)                                  --------->KAN1         --------->ANAC58  <----------ID1              --------->ZAT6       --------->ANAC58         --------->ANAC58--------->ANAC58          <---------KAN1           --------->ANAC58--------- ------->AtLEC2          --------->ANAC58     --------->HSFB2a(2)  ------>MYB83  --------->ICU4<----- -->ANAC58             ---------->DOF2  --------->O2 <-----------GT1        ----------->GT1<---------GLK1(2) -->ANAC58             ===========================bZIP_DOF         ------>MYB46(1)        --------->KAN1   aatgcagaagcatgcaaaaatatgagaaagcaccaaaatctcacatgtctcgaatttacactctaaacctacataagctcgtaatattcaagagattctt  4053200              --------->AHL20(3)              <---------AHL25(1)              --------->AHL20(2)              --------->AHL12(1)              <---------AHL12(1)              --------->AHL25(1)                                                                 <---    ------->PIF5                                                           --------->MYB52(1)    ----    <-------PIF5                                                           >>>>>>>>>>>>>>>>>LFY  ----   ----------->RAV1(2)                                          --------->AHL25(1)          ---------   --------->ZAT2                                               <---------AHL12(1)          <--------   <---------ZAT2                                               <---------AHL20(3)          <--------   --------->At4g35610        --------->ANAC46                  <---------AHL20(2)          ---------   <---------At4g35610        --------->ANAC58                  <---------AHL25(1)          ---------  ------>NtERF2               --------->ANAC58                  --------->AHL25(2)          <-------- <---------ALFIN1<-----------GT1                                <---------AHL25(2)        --------->ANAC46 >GLK1(2)     --------->AHL25(2)                                --------->AHL12(1)       <---------At5g28300 -----DOF2    <---------AHL25(2)            --------->YAB1 ----------->GT1 <<<<<<<<<<<<<<<<<LFY  <---   tagccacctgcatcaattttttcaatcccttcacgaattctagcaaacaaaatttcaaaaacagaaaaaattgaacataccagtggaaattcacagcaga  4053300                                                                  <---------AHL20(2)                                                                  <---------AHL25(1)                                                                  <---------AHL25(3)                                                                 --------->AHL25(3)                                                                 --------->AHL20(3)                                                                 --------->AHL25(2)   <----------DOF2                                               <---------AHL25(2)  <---------DOF5.7(1)                                            <---------AHL25(1) ------ZAT14                                                     --------->AHL25(1) ----->ZAT18                                                     <---------AHL20(2) ----->ZAT14                                                     --------->AHL20(2) >ZAT2                                                           <---------AHL20(3) -ZAT14                               <---------HSFB2a(2) <---------ANAC46  <---------YAB1 -At4g35610                           --------->HSFB2a(2) --------->At4g35610 >At4g35610                        <----------DOF2        ----------->GT1 --------->YAB1 >ZAT14                         --------------->AGL15----------->RAV1(2) <------ZmHOX2a(2)         -- -ZAT2                       <-----------GT1     --------->DOF5.7(1) <---------YAB5         --------- ------ZAT18------->GAMYB--------->YAB5   --------->GLK1(1)    <---------WOX13(2)      ----------->GT1   gcactcttttgcaatcgccttcgaagaagattaacttctttcagaaatcaaaaaaccctgaggtgaatttaatcgatcacgattttgcagagtttaaaga  4053400                                                                                              <------ZmHOX2a(1)                                                                                          <------NtERF2                     --------->AHL12(1)                                                  ------>NtERF2                     <---------AHL12(1)                                                  <---------RAP2.6(3)                    <---------AHL12(2)                                                  --------->RAP2.6(2)                    <---------AHL25(1)                                                  --------->ATERF1(2)                    --------->AHL20(2)                                                  <---------ATERF1(2)                    --------->AHL25(2)                                                 <---------LBD16    <---------AHL12(1)                                                                <---------At4g35610    --------->AHL25(1)                                                                --------->ZAT2    --------->AHL25(2)                                                                --------->At4g35610    <---------AHL25(2)       --------->GLK1(2)                                        <---------ZAT2    <---------AHL20(3)       --------->RVE1(2)                                      --------->MYB46(3)    --------->AHL12(1)      <---------GLK1(2)                    --------->GLK1(2)----------->RAV1(1)    <---------AHL20(2)   --------->YAB1               <------MYB46(1)             <-----------HVH21    <---------AHL25(1) --------->RVE1(2)              <------MYB83               --------->ANAC46 --------->GT1      --------->AHL12(3)<---------ARR11(2)     <------ZmHOX2a(1)   ----------->HVH21 ->DOF2            --------->AHL12(2) --------->ARR11(2)<---------REM1(1)        <---------ETT(1) ---   gaagaaaaaattgaccttgaaaaaaaatcagaatcgaacagaaccagagaagaagttggtgaaggagaatcgattcagaaaacccgacagccggcaggaa  4053500                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    -                                                             ---------->ID1                         <                                                            <-----------GT1                         <                                                         <---------KAN1                             <                                                        <---------ARR14(2)                          -                                                        <---------RVE1(2)                           <                  ----------->GT1                   <---------LBD16                                <-                 --------->DAG2                --------->GATA12                                    --                 --------->DOF5.7(1)           <---------GATA12<----------DOF2                <------       <---------ANAC58                        <---------GLK1(2)               <---------TOE2(3)<----       <---------ANAC58                        <---------ARR11(3)          <------------CBF   -------       <---------ANAC46                        --------->ARR11(3)         <---------GLK1(2)   ------- -------->GT1   ---------->DOF2      *TSS      <---------RVE1(2)<---------DOF5.7(1)     <---------RVE1(2)   tggagaatttcgtagaagaaaagtgaaattgggcgagaagaaaaccctagattttggggatttttcttttttgccagaattgtggtttttgatattaagt  4053600  <------------CBF --------->ATHB12 <---------AHL25(3) <---------AHL20(2) ---------AHL20(1) -------->AHL20(1) -------->AHL25(1) -------->AHL20(3) ---------AHL20(2) -------->AHL20(2) ---------AHL25(1) -------->AHL25(2) -------->AHL12(1)                                                                             ====== ---------AHL12(1)                         ------->TEIL                               ----------->GT1 ---------AHL25(3)                    --------->YAB5                              ---------->DOF2 ---------AHL25(2)                   <---------YAB1                               =================== -------->AHL25(3)                   --------->ICU4                     --------->RVE1(2)      <----- ---------AHL20(3)                 --------->YAB5                       <---------ARR11(3)  --------- --------AHL12(2)                  --------->YAB1              --------->CCA1(2)--------->ANAC58 ------->AHL12(2)                 --------->ICU4              --------->GATA12  --------->ANAC58 ---ANAC55(2)                   --------->YAB1                <---------GATA12  --------->ANAC46    < -----AHL20(2)          ----------->GT1 <---------YAB1--------->DOF5.7(1)<------ZmHOX2a(2)  --------- -->ANAC55(2)       <---------ZAT6<---------YAB1    ---------->DOF2     --------->ARR11(3)  <-------- ---->GT1 --------->RVE1(2)     --------->YAB5    --------->ANAC46 <---------RVE1(2)----------->GT1<-   aatttattgaaaaatcgaaatagagtaagttatatgatgatgatgaatttacacaaaagaccgagatttgataagatcacttacgaaagtgaaaaatctt  4053700                                              --------->HSFB2a(1)                                              <------ZmHOX2a(2)                                              <---------HSFB2a(1)                                             <---------GATA12                                             --------->GATA12         <---------ANAC58                    --------->ARR11(3)        <------NtERF2                        <---------ARR11(2)      --------->ALFIN1                       <---------RVE1(2)     ------->MYC3                            --------->ARR14(2)     <-------MYC4                      <------ZmHOX2a(2)     <-------MYC3                     <---------ARR14(3)     <-------MYC2                     <---------ARR14(2)     ------->MYC2                     --------->ARR11(2)     ------->MYC4                     --------->ARR14(2)     <-------PIF5                     <---------ARR11(3)     ------->PIF5                     --------->ARR14(3)    ===================bZIP_DOF       --------->ARR11(3)    >>>>>>>>>>HY5                     <---------ARR11(2)    ===================bZIP_DOF       <---------GATA12      --------->bZIP60(1)    --------->TGA1a                   --------->AGP1        <---------bZIP60(1)    <---------PIF3(3)                 <---------AGP1       <---------TOE2(3)    --------->PIF3(3)                 --------->RVE1(2)   <---------TGA2(2)    <---------TGA1a                   --------->GATA12 --------->ZAT2    --------->O2     --------->KAN1   <---------RVE1(2)<---------At4g35610    <<<<<<<<<<HY5   --------->DOF5.7(1)--------->CCA1(2) ----------->HVH21    <---------O2  ---------->DOF2    <---------KAN1    ----------->RAV1(2)    <---------bZIP60(2)              <---------CCA1(2) --------->At4g35610    --------->bZIP60(2)             ----------->ARR10 --------->LBD16             <---------WOX13(2) =============bZIP_DOF          <-------PIF4 <---------ARR14(2)                 --------->AHL25(3) =============bZIP_DOF          ------->PIF4 <-----------ARR10--------->DOF5.7(2) --------->WOX13(2) -----DOF2  <----------DOF2     --------->ZAT18       ------>NtERF2  <---------TOE2(2) >ARR11(3)<---------ZAT18   <------NtERF2    --------->ARR11(2)   --------->YAB1<---------AHL20(2) ----------------PIF3(2)    <---------At4g35610     <---------LBD16  <---------TOE1(2) >GLK1(2)<---------ANAC58   --------->At4g35610------>ZmHOX2a(2) <---------YAB5 --------->AHL20(2) -ARR11(3)--------->ZAT18  ------>NtERF2------>ZmHOX2a(2)----------->TGA1<-------TEIL ----------GT1  <---------YAB1<---------ZAT18<---------ARR11(3)  <---------YAB1--------->AHL25(3)   tttgccacgtggcgctctatgaaagatgccagcgcgcgcagatctgggatcttctccggctgacgttatcataggttcatttttaatttgttttgttttt  4053800                    <---------AHL12(2)                    --------->AHL12(2)                   --------->AHL20(2)                   <---------AHL25(3)                   --------->AHL25(3)                   <---------AHL20(2)                   --------->AHL20(1)                   <---------AHL20(1)                   --------->AHL12(3)                   <---------AHL12(3)                   <---------AHL25(2)                   --------->AHL25(2)                   <---------AHL25(1)                   --------->AHL25(1)                  <---------AHL12(3)                  --------->AHL20(2)                  --------->AHL25(3)                  <---------AHL25(3)                  <---------AHL25(2)                  --------->AHL25(2)                  <---------AHL20(2)                  --------->AHL12(3)                  --------->AHL25(1)                          --------->ANAC55(1)                  <---------AHL25(1)                          <---------ANAC55(2)                  --------->AHL12(1)                          --------->ANAC46                  <---------AHL12(1)                          --------->ANAC58                 --------->AHL12(2)                    --------->O2 ----------->HVH21     -----------                <---------WOX13(2)           >>>>>>>>>SARD1   --------->ANAC58          <---------ALFIN1                --------->WOX13(2)     <------ZmHOX2a(1) ----------->HVH21    ----------->HVH21          ---------->DOF2             ----------->GT1  --------->ANAC46     --------->ALFIN1---------       <---------HSFB2a(2)<----------DOF2    >>>>>>>>>CBP60g  --------->ANAC55(2)    ----------->HVH21   tcttatatactagaaagaaattaaatttcttttaaaaaacaggagaaatttgggtccaagtgacacgcaagtgatgggctgggacgagggacacctgtaa  4053900                                   --------->AHL12(2)                                   <---------AHL20(2)                                   <---------AHL25(2)                                   <---------AHL12(3)                                   --------->AHL25(1)                                  --------->AHL25(3)                                             ----                                  <---------AHL12(1)                                             ----                                  --------->AHL12(1)                                             <---                                 <---------CCA1(1)                                               <---                                 <---------RVE1(1)                                               ----                                --------->ARR11(3)                                               ----                                <---------GLK1(2)                                                <---                          --------->AHL20(2)                                                   <-----                          <---------AHL20(2)               --------->WOX13(2)                  <-----      <-----------------AGL1    <---------ARR11(3)         --------->AHL12(2)                  ------    <---------PCF2        --------->YAB1                   <---------WOX13(2)                  ------ --------->ALFIN1       --------->WOX13(2)               <---------AHL20(2)                    ------ >RAV1(2)               <---------WOX13(2)            ----------->GT1                 <----------DOF2 -->GT1                --------->YAB5        ---------->DOF2 <---------ICU4       <----------DOF2----   aatgtggggaccctattggcaaaaacaattaaaagatttttttttgttaaagaaataagttaattagttcaatatttgtaatttctttctttcacaaaat  4054000  Previous    Next  AGI:  At5g12840.1    Description:  HAP2A (EMBRYO DEFECTIVE 2220); transcription factor. Identical to Nuclear transcription factor Y subunit A-1 (NFYA1) [Arabidopsis Thaliana] (GB:Q9LXV5;GB:O23630); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT3G20910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21904.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) Range:  from: 4050843    to: 4053537    Orientation: Reverse Links:  TAIR  MIPS  AIP      Please cite the corresponding publications when using AthaMap.
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