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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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1        10        20        30        40        50        60        70        80        90        100 
                                                <-------TEIL
                                               --------->CCA1(2)
                                              --------->ARR11(1)
                                              --------->ARR11(3)
                       <-------TEIL  --------->LBD16
          --------->YAB1             --------->At5g28300
         <---------ATHB12          <-----------------------TaNAC69(2)                             --
       --------->WOX13(1)  --------->ZAT6 ---------->DOF2           ---------->DOF2          -------
-->MYB46(3)       --------->AHL20(2)----------->GT1            XXXXXXXXXXXXXXXXXXX>MIR156H   -------
 
attcaaaatccaatcaaaaaaaaaaattcatcactaaaaccgtgaaaaagatacagactccaactacaaaaaaaagagagcaattttagggctatgaagc  4053100
                                       <---------TGA1a
                                       <---------O2
                                       --------->O2
                                 --------->ARR11(3)
                                 <---------ARR11(3)
                                <---------GLK1(2)
        --------->ANAC58   ----------->RAV1(1)
        --------->ANAC58  <----------ID1                                   ----------->GT1
        --------->AtLEC2--------->ANAC58            <-----------GT1        --------->ANAC58
------->AtLEC2          --------->ANAC58     --------->HSFB2a(2)  ------>MYB83  --------->ICU4<-----
-->ANAC58             ---------->DOF2  --------->TGA1a--------->ZAT6       --------->ANAC58---------
-->ANAC58             ===========================bZIP_DOF         ------>MYB46(1)         <---------GLK1(2)
 
aatgcagaagcatgcaaaaatatgagaaagcaccaaaatctcacatgtctcgaatttacactctaaacctacataagctcgtaatattcaagagattctt  4053200
                                                                                                <---
   ------->PIF5                                                                            ---------
   <-------PIF5                                                                            <--------
  <---------At4g35610                                                                      ---------
  ----------->RAV1(2)                                                                      <--------
  <---------ZAT2                                                                           ---------
  --------->ZAT2                                                                           <--------
  --------->At4g35610        --------->ANAC46                                            --------->ANAC46
 ------>NtERF2               --------->ANAC58                             <<<<<<<<<<<<<<<<<LFY  ----
<---------ALFIN1             --------->ANAC58                             >>>>>>>>>>>>>>>>>LFY  ----
-----DOF2       <-----------GT1                                <---------AHL20(2)       <---------At5g28300
>GLK1(2)     --------->AHL20(2)            --------->YAB1 ----------->GT1 --------->MYB52(1)    <---
 
tagccacctgcatcaattttttcaatcccttcacgaattctagcaaacaaaatttcaaaaacagaaaaaattgaacataccagtggaaattcacagcaga  4053300
  <----------DOF2
------ZAT14
>ZAT2
-ZAT2
>At4g35610                                                       <---------AHL20(2)
-At4g35610                               --------->GLK1(1)      --------->AHL20(2)
>ZAT14                               --------->HSFB2a(2)        <---------AHL20(2)
-ZAT14                               <---------HSFB2a(2) ----------->GT1   <---------YAB1
----->ZAT18                       <----------DOF2        <---------ANAC46--------->YAB1           --
----->ZAT14                    --------------->AGL15     --------->At4g35610          ----------->GT1
------ZAT18------->GAMYB    <-----------GT1         ----------->RAV1(2) <------ZmHOX2a(2)  ---------
 
gcactcttttgcaatcgccttcgaagaagattaacttctttcagaaatcaaaaaaccctgaggtgaatttaatcgatcacgattttgcagagtttaaaga  4053400
                                                                                             <------ZmHOX2a(1)
                                                                                         <------NtERF2
                                                                                        ------>NtERF2
                                                                                        <---------RAP2.6(3)
                                                                                       <---------ATERF1(2)
                                                                                       --------->RAP2.6(2)
                                                                                       --------->ATERF1(2)
                                                                                      <---------LBD16
                                                                                     <---------ZAT2
                                                                                     --------->At4g35610
                                                                                     --------->ZAT2
                                                                                     <---------At4g35610
                                                                                   --------->MYB46(3)
                                                                --------->GLK1(2)----------->RAV1(1)
                            --------->GLK1(2)               <------ZmHOX2a(1)    <-----------HVH21
   <---------AHL20(2)      <---------GLK1(2)           <---------REM1(1)        <---------ETT(1)
--------->GT1           --------->YAB1               <------MYB83               --------->ANAC46
->DOF2             --------->AHL20(2)                <------MYB46(1)            ----------->HVH21---
 
gaagaaaaaattgaccttgaaaaaaaatcagaatcgaacagaaccagagaagaagttggtgaaggagaatcgattcagaaaacccgacagccggcaggaa  4053500
                                                              <----------DOF2                      -
                                                            ---------->ID1                         -
                 ----------->GT1                           <-----------GT1                         <
                --------->DAG2                         <---------ARR14(2)                          <
      <---------ANAC46                             <---------LBD16                           -------
      <---------ANAC58                        <---------ARR11(3)              <---------TOE2(3)<----
      <---------ANAC58                        --------->ARR11(3)          <------------CBF   <------
-------->GT1   ---------->DOF2      *TSS      <---------GLK1(2)          <---------GLK1(2)   -------
 
tggagaatttcgtagaagaaaagtgaaattgggcgagaagaaaaccctagattttggggatttttcttttttgccagaattgtggtttttgatattaagt  4053600
                                                                                              <-----
 <------------CBF                                                                             ======
--------->ATHB12                                                                     ----------->GT1
<---------AHL20(2)                                                                 ----------->GT1
-------->AHL20(2)                         ------->TEIL                           ===================
-------->AHL20(1)                   --------->ICU4                               ---------->DOF2
---------AHL20(1)                   <---------YAB1                             --------->ANAC46
---------AHL20(2)                 --------->YAB1                               --------->ANAC58    <
---->GT1                         --------->ICU4                         <------ZmHOX2a(2)  ---------
-----AHL20(2)                  --------->YAB1      ---------->DOF2     <---------ARR11(3)  ---------
---ANAC55(2)           ----------->GT1 <---------YAB1         --------->CCA1(2)--------->ANAC58   <-
-->ANAC55(2)       <---------ZAT6<---------YAB1  --------->ANAC46      --------->ARR11(3)  <--------
 
aatttattgaaaaatcgaaatagagtaagttatatgatgatgatgaatttacacaaaagaccgagatttgataagatcacttacgaaagtgaaaaatctt  4053700
        <---------ANAC58
       <------NtERF2
     --------->ALFIN1
    <-------MYC2
    ------->MYC2
    <-------PIF5
    ------->PIF5                                      <---------At4g35610
    ------->MYC3                             <---------HSFB2a(1)
    <-------MYC3                             <------ZmHOX2a(2)
    ------->MYC4                             --------->HSFB2a(1)
    <-------MYC4                            <---------ARR14(2)
   >>>>>>>>>>HY5                      --------->CCA1(2)
   --------->TGA1a                    <------ZmHOX2a(2)
   --------->O2                      --------->AGP1   --------->At4g35610
   ===================bZIP_DOF       --------->ARR14(3)
   <---------TGA1a                   <---------ARR14(2)    <---------bZIP60(1)
   <---------O2                      <---------ARR11(3)    --------->bZIP60(1)
   ===================bZIP_DOF       <---------ARR14(3)   <---------TOE2(3)
   --------->bZIP60(2)               --------->ARR11(3)  <---------TGA2(2)
   --------->PIF3(3)                 --------->ARR14(2) ----------->HVH21
   <---------bZIP60(2)               <---------AGP1   --------->ZAT2
   <<<<<<<<<<HY5 ---------->DOF2    <---------CCA1(2) ----------->RAV1(2)
   <---------PIF3(3)               ----------->ARR10 --------->LBD16
-----DOF2  <----------DOF2     <-------PIF4 <-----------ARR10--------->DOF5.7(2)
=============bZIP_DOF          ------->PIF4 --------->ARR14(2)
=============bZIP_DOF          --------->ZAT18       ------>NtERF2
----------------PIF3(2)    <------NtERF2    --------->ARR11(3)      <---------TOE2(2)
>ARR11(3)--------->ZAT18   --------->At4g35610     <---------LBD16  <---------TOE1(2)
>GLK1(2)<---------ANAC58   <---------At4g35610------>ZmHOX2a(2)  --------->YAB1<---------AHL20(2)
----------GT1  <---------YAB1<---------ZAT18<---------ARR11(3)  <---------YAB1 --------->AHL20(2)
-ARR11(3)<---------ZAT18  ------>NtERF2------>ZmHOX2a(2)----------->TGA1<-------TEIL
 
tttgccacgtggcgctctatgaaagatgccagcgcgcgcagatctgggatcttctccggctgacgttatcataggttcatttttaatttgttttgttttt  4053800
                                                             --------->ANAC55(1)
                  <---------AHL20(2)                         --------->ANAC55(2)
                  --------->AHL20(1)                         <---------ANAC55(2)
                  --------->AHL20(2)                         --------->ANAC58
                  <---------AHL20(1)                  --------->O2 ----------->HVH21     -----------
                 <---------AHL20(2)         >>>>>>>>>SARD1   --------->ANAC46          <---------ALFIN1
                 --------->AHL20(2)   <------ZmHOX2a(1) ----------->HVH21           ----------->HVH21
         ---------->DOF2             ----------->GT1  --------->ANAC46     --------->ALFIN1---------
      <---------HSFB2a(2)<----------DOF2    >>>>>>>>>CBP60g  --------->ANAC58----------->HVH21
 
tcttatatactagaaagaaattaaatttcttttaaaaaacaggagaaatttgggtccaagtgacacgcaagtgatgggctgggacgagggacacctgtaa  4053900
                                  <---------AHL20(2)
                                <---------CCA1(1)
                                <---------RVE1(1)
                               <---------GLK1(2)
     <-----------------AGL1    --------->ARR11(3)
   <---------PCF2              <---------ARR11(3)
--------->ALFIN1         <---------AHL20(2)             <---------AHL20(2)                    ------
>RAV1(2)                 --------->YAB1              ----------->GT1                 <----------DOF2
-->GT1                   --------->AHL20(2) ---------->DOF2 <---------ICU4       <----------DOF2----
 
aatgtggggaccctattggcaaaaacaattaaaagatttttttttgttaaagaaataagttaattagttcaatatttgtaatttctttctttcacaaaat  4054000
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AGI:  At5g12840.1   
Description:  HAP2A (EMBRYO DEFECTIVE 2220); transcription factor. Identical to Nuclear transcription factor Y subunit A-1 (NFYA1) [Arabidopsis Thaliana] (GB:Q9LXV5;GB:O23630); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT3G20910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21904.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289)
Range:  from: 4050843    to: 4053537    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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