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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-------
TEIL
--------->
CCA1(2)
--------->
ARR11(1)
--------->
ARR11(3)
<-------
TEIL
--------->
LBD16
--------->
YAB1
--------->
At5g28300
<---------
ATHB12
<-----------------------
TaNAC69(2)
--
--------->
WOX13(1)
--------->
ZAT6
---------->
DOF2
---------->
DOF2
-------
-->
MYB46(3)
--------->
AHL20(2)
----------->
GT1
XXXXXXXXXXXXXXXXXXX>
MIR156H
-------
attcaaaatccaatcaaaaaaaaaaattcatcactaaaaccgtgaaaaagatacagactccaactacaaaaaaaagagagcaattttagggctatgaagc
4053100
<---------
TGA1a
<---------
O2
--------->
O2
--------->
ARR11(3)
<---------
ARR11(3)
<---------
GLK1(2)
--------->
ANAC58
----------->
RAV1(1)
--------->
ANAC58
<----------
ID1
----------->
GT1
--------->
AtLEC2
--------->
ANAC58
<-----------
GT1
--------->
ANAC58
------->
AtLEC2
--------->
ANAC58
--------->
HSFB2a(2)
------>
MYB83
--------->
ICU4
<-----
-->
ANAC58
---------->
DOF2
--------->
TGA1a
--------->
ZAT6
--------->
ANAC58
---------
-->
ANAC58
===========================
bZIP_DOF
------>
MYB46(1)
<---------
GLK1(2)
aatgcagaagcatgcaaaaatatgagaaagcaccaaaatctcacatgtctcgaatttacactctaaacctacataagctcgtaatattcaagagattctt
4053200
<---
------->
PIF5
---------
<-------
PIF5
<--------
<---------
At4g35610
---------
----------->
RAV1(2)
<--------
<---------
ZAT2
---------
--------->
ZAT2
<--------
--------->
At4g35610
--------->
ANAC46
--------->
ANAC46
------>
NtERF2
--------->
ANAC58
<<<<<<<<<<<<<<<<<
LFY
----
<---------
ALFIN1
--------->
ANAC58
>>>>>>>>>>>>>>>>>
LFY
----
-----
DOF2
<-----------
GT1
<---------
AHL20(2)
<---------
At5g28300
>
GLK1(2)
--------->
AHL20(2)
--------->
YAB1
----------->
GT1
--------->
MYB52(1)
<---
tagccacctgcatcaattttttcaatcccttcacgaattctagcaaacaaaatttcaaaaacagaaaaaattgaacatac
cagtggaaattcacagcaga
4053300
<----------
DOF2
------
ZAT14
>
ZAT2
-
ZAT2
>
At4g35610
<---------
AHL20(2)
-
At4g35610
--------->
GLK1(1)
--------->
AHL20(2)
>
ZAT14
--------->
HSFB2a(2)
<---------
AHL20(2)
-
ZAT14
<---------
HSFB2a(2)
----------->
GT1
<---------
YAB1
----->
ZAT18
<----------
DOF2
<---------
ANAC46
--------->
YAB1
--
----->
ZAT14
--------------->
AGL15
--------->
At4g35610
----------->
GT1
------
ZAT18
------->
GAMYB
<-----------
GT1
----------->
RAV1(2)
<------
ZmHOX2a(2)
---------
gcact
cttttgcaatcgccttcgaagaagattaacttctttcagaaatcaaaaaaccctgaggtgaatttaatcgatcacgattttgcagagtttaaaga
4053400
<------
ZmHOX2a(1)
<------
NtERF2
------>
NtERF2
<---------
RAP2.6(3)
<---------
ATERF1(2)
--------->
RAP2.6(2)
--------->
ATERF1(2)
<---------
LBD16
<---------
ZAT2
--------->
At4g35610
--------->
ZAT2
<---------
At4g35610
--------->
MYB46(3)
--------->
GLK1(2)
----------->
RAV1(1)
--------->
GLK1(2)
<------
ZmHOX2a(1)
<-----------
HVH21
<---------
AHL20(2)
<---------
GLK1(2)
<---------
REM1(1)
<---------
ETT(1)
--------->
GT1
--------->
YAB1
<------
MYB83
--------->
ANAC46
->
DOF2
--------->
AHL20(2)
<------
MYB46(1)
----------->
HVH21
---
gaagaaaaaattgac
cttgaaaaaaaatcagaatcgaacagaaccagagaagaagttggtgaaggagaatcgattcagaaaacccgacagccggcaggaa
4053500
<----------
DOF2
-
---------->
ID1
-
----------->
GT1
<-----------
GT1
<
--------->
DAG2
<---------
ARR14(2)
<
<---------
ANAC46
<---------
LBD16
-------
<---------
ANAC58
<---------
ARR11(3)
<---------
TOE2(3)
<----
<---------
ANAC58
--------->
ARR11(3)
<------------
CBF
<------
-------->
GT1
---------->
DOF2
*
TSS
<---------
GLK1(2)
<---------
GLK1(2)
-------
tggagaatttcgtagaagaaaagtgaaattgggcgag
aagaaaaccctagattttggggatttttcttttttgccagaattgtggtttttgatattaagt
4053600
<-----
<------------
CBF
======
--------->
ATHB12
----------->
GT1
<---------
AHL20(2)
----------->
GT1
-------->
AHL20(2)
------->
TEIL
===================
-------->
AHL20(1)
--------->
ICU4
---------->
DOF2
---------
AHL20(1)
<---------
YAB1
--------->
ANAC46
---------
AHL20(2)
--------->
YAB1
--------->
ANAC58
<
---->
GT1
--------->
ICU4
<------
ZmHOX2a(2)
---------
-----
AHL20(2)
--------->
YAB1
---------->
DOF2
<---------
ARR11(3)
---------
---
ANAC55(2)
----------->
GT1
<---------
YAB1
--------->
CCA1(2)
--------->
ANAC58
<-
-->
ANAC55(2)
<---------
ZAT6
<---------
YAB1
--------->
ANAC46
--------->
ARR11(3)
<--------
aatttattgaaaaatcgaaatagagtaagttatatgatgatgatgaatttacacaaaagaccgagatttgataagatcacttacgaaagtgaaaaatctt
4053700
<---------
ANAC58
<------
NtERF2
--------->
ALFIN1
<-------
MYC2
------->
MYC2
<-------
PIF5
------->
PIF5
<---------
At4g35610
------->
MYC3
<---------
HSFB2a(1)
<-------
MYC3
<------
ZmHOX2a(2)
------->
MYC4
--------->
HSFB2a(1)
<-------
MYC4
<---------
ARR14(2)
>>>>>>>>>>
HY5
--------->
CCA1(2)
--------->
TGA1a
<------
ZmHOX2a(2)
--------->
O2
--------->
AGP1
--------->
At4g35610
===================
bZIP_DOF
--------->
ARR14(3)
<---------
TGA1a
<---------
ARR14(2)
<---------
bZIP60(1)
<---------
O2
<---------
ARR11(3)
--------->
bZIP60(1)
===================
bZIP_DOF
<---------
ARR14(3)
<---------
TOE2(3)
--------->
bZIP60(2)
--------->
ARR11(3)
<---------
TGA2(2)
--------->
PIF3(3)
--------->
ARR14(2)
----------->
HVH21
<---------
bZIP60(2)
<---------
AGP1
--------->
ZAT2
<<<<<<<<<<
HY5
---------->
DOF2
<---------
CCA1(2)
----------->
RAV1(2)
<---------
PIF3(3)
----------->
ARR10
--------->
LBD16
-----
DOF2
<----------
DOF2
<-------
PIF4
<-----------
ARR10
--------->
DOF5.7(2)
=============
bZIP_DOF
------->
PIF4
--------->
ARR14(2)
=============
bZIP_DOF
--------->
ZAT18
------>
NtERF2
----------------
PIF3(2)
<------
NtERF2
--------->
ARR11(3)
<---------
TOE2(2)
>
ARR11(3)
--------->
ZAT18
--------->
At4g35610
<---------
LBD16
<---------
TOE1(2)
>
GLK1(2)
<---------
ANAC58
<---------
At4g35610
------>
ZmHOX2a(2)
--------->
YAB1
<---------
AHL20(2)
----------
GT1
<---------
YAB1
<---------
ZAT18
<---------
ARR11(3)
<---------
YAB1
--------->
AHL20(2)
-
ARR11(3)
<---------
ZAT18
------>
NtERF2
------>
ZmHOX2a(2)
----------->
TGA1
<-------
TEIL
tttgccacgtggcgctctatgaaagatgccagcgcgcgcagatctgggatcttctccggctgacgttatcataggttcatttttaatttgttttgttttt
4053800
--------->
ANAC55(1)
<---------
AHL20(2)
--------->
ANAC55(2)
--------->
AHL20(1)
<---------
ANAC55(2)
--------->
AHL20(2)
--------->
ANAC58
<---------
AHL20(1)
--------->
O2
----------->
HVH21
-----------
<---------
AHL20(2)
>>>>>>>>>
SARD1
--------->
ANAC46
<---------
ALFIN1
--------->
AHL20(2)
<------
ZmHOX2a(1)
----------->
HVH21
----------->
HVH21
---------->
DOF2
----------->
GT1
--------->
ANAC46
--------->
ALFIN1
---------
<---------
HSFB2a(2)
<----------
DOF2
>>>>>>>>>
CBP60g
--------->
ANAC58
----------->
HVH21
tcttatatactagaaagaaattaaatttcttttaaaaaacaggagaaatttgggtccaagtgacacgcaagtgatgggctgggacgagggacacctgtaa
4053900
<---------
AHL20(2)
<---------
CCA1(1)
<---------
RVE1(1)
<---------
GLK1(2)
<-----------------
AGL1
--------->
ARR11(3)
<---------
PCF2
<---------
ARR11(3)
--------->
ALFIN1
<---------
AHL20(2)
<---------
AHL20(2)
------
>
RAV1(2)
--------->
YAB1
----------->
GT1
<----------
DOF2
-->
GT1
--------->
AHL20(2)
---------->
DOF2
<---------
ICU4
<----------
DOF2
----
aatgtggggaccctattggcaaaaacaattaaaagatttttttttgttaaagaaataagttaattagttcaatatttgtaatttctttctttcacaaaat
4054000
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AGI:
At5g12840.1
Description:
HAP2A (EMBRYO DEFECTIVE 2220); transcription factor. Identical to Nuclear transcription factor Y subunit A-1 (NFYA1) [Arabidopsis Thaliana] (GB:Q9LXV5;GB:O23630); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT3G20910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21904.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289)
Range:
from: 4050843
to: 4053537
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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