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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                                 ---
                                                                                            --------
                                                                                            <------ZmHOX2a(2)
                                                                                           ---------
                                    <---------ARR14(2)                                     ---------
                                    --------->GLK1(2)                                      <--------
                               ---------->DOF2                                             <--------
                           --------->ANAC58                                                ---------
                           --------->ANAC58     <------ZmHOX2a(2)                          <--------
                   <---------GLK1(2)--------->ARR14(2)                                     ---------
                   --------->ARR14(2)          --------->AGP1<---------AHL20(2)            <--------
                   <---------ARR14(2)          <---------ARR14(2)                        -----------
          --------->ZAT14---------->DOF2       --------->ARR14(2)                    <---------HSFB2a(2)
       ----------->GT1 <---------YAB1         --------->At4g35610          --------->MYB46(3)------>ZmHOX2a(2)
-----ANAC55(2)--------->MYB52(1)   <---------GLK1(2)        --------->AHL20(2)       --------->HSFB2a(2)
 
atgaacaaaacagtaaacaacggattttgaaagcaaaagaatctgtatcagatccaaatgaaattatatcgaatgtcaacaactaaatctcgaagatctg  3963100
                                                       <------NtERF2
                                                      ------>NtERF2
                                                      --------->At4g35610
                                                      <------NtERF2
------>GLK1(1)                                        --------->LBD16                             --
->CCA1(2)                                             <---------At4g35610                  ---------
>GLK1(2)                                             --------->RAP2.3(2)               --------->ANAC58
>ARR14(3)                       --------->WOX13(1)   ----------->RAV1(1)               --------->ANAC58
-AGP1              ------>ZmHOX2a(2)                 --------->DEAR3(1)                --------->ANAC55(1)
-ARR14(3)         <------ZmHOX2a(2)                 --------->RAP2.3(1)                --------->ANAC55(2)
>ARR11(3)        <---------ARR14(2)                 <---------LBD16                    <---------ANAC55(2)
-ARR11(3)        --------->ARR14(2)          --------->ANAC46                          --------->ANAC46
>ARR14(2)       --------->At4g35610 ----------->GT1------->GAMYB                      <---------LBD16
-ARR14(2)       <---------At4g35610--------->YAB1 --------->ANAC46                  <---------REM1(2)
>ARR10--------->GLK1(2)       <---------ATHB12    --------->DEAR3(1)           <---------GLK1(2) ---
 
aaatcaaacaatctgtatcagatcccaaaacaaatcaatcggaaaaaaacacaacgccgcagagaagaaaactccgatttcaaattcttcacggaattca  3963200
                                                                               <---------ARR14(2)
                                                                               <---------GLK1(2)
                                                                           <-------TEIL
                                                                          --------->CCA1(2)   ------
                                                                         --------->ARR14(2)   <-----
     <---------ALFIN1                                                    <---------ARR14(2)<--------
   ----------->RAV1(1)                                         ===============================HOX2a_HOX2a
------->RAP2.6(3)                                              <------ZmHOX2a(2)       <------ZmHOX2a(1)
>GLK1(1)                    --------->YAB1                    --------->AGP1   --------->ARR14(2)
------>MYB52(1)--------->ANAC55(2)            ----------->GT1 --------->ARR11(3)       =============
 
aaacggcaacacattttcaagtgatagaaaatcaaaatccaagttaagagagaaaatatgaaacagatcaagagcggatacagatttggaggaagacgat  3963300
                                                             --------------->AGL15
                                                             <---------------AGL15
         --------->YAB1                                     <---------ANAC55(2)
===============================HOX2a_HOX2a----------------->AG                                     <
<------ZmHOX2a(2)                         ===================================MADS_MADS             -
--->ARR14(2)                    <---------GLK1(2)  <------ZmHOX2a(1)                              --
----ARR14(2)                    <---------ICU4    ----------->GT1                              -----
-------------WRI1           <-------TEIL  <-----------------AGL1                             -------
=======HOX2a_HOX2a      <------ZmHOX2a(1) ----------------->AGL1 ---------->DOF2            --------
 
tcgatcaaagtatcacaataagtagtaggagttcataatctcattccctagagaggaaacaatacataaaaaggaaatagcagagtaaacaataactcac  3963400
                    --------------------->WRI1
             <---------LBD16
         --------->ARR14(2)                   <------ZmHOX2a(1)
         --------->GLK1(2)             --------->LBD16
     <------ZmHOX2a(1)               <---------LBD16
  <---------At4g35610              <---------SPL7
---------ZAT14 <------NtERF2      --------->WRKY38(1)
-------->ZAT14------>NtERF2       ----------->HVH21                                               --
------->ALFIN1--------->LBD16     --------->WRKY12              --------->ALFIN1              ------
---->ANAC46  --------->LBD16      --------->ETT(2)           <---------MYB46(3)       <---------AHL20(2)
-->MYB52(1) <---------LBD16       --------->DEAR3(1)        <---------ANAC46          --------->AHL20(2)
--->HVH21<---------ARR14(2)       <---------ETT(2) <------ZmHOX2a(1)    <---------ZAT14     <-------
 
ggtgcagaggagaatcccggcgagattgggataatcgtcgaccggagtaggagaggaagtgagacgggtggagagtgaagaagttggatttatttatgaa  3963500
                                          ----------->GT1                   <------MYB46(1)
                                          <------MYB46(1)               <---------MYB46(3)
                                          <------MYB83                  --------->MYB55(2)
                                        <---------WOX13(1)           <-------GAMYB --------->GLK1(1)
                                       <------------CBF             <---------ANAC58
                                      --------->ATHB12              <---------ANAC46
                                     <---------YAB1                 <---------ANAC58              <-
                                  <---------DEAR3(1)       <---------ZAT2   <------MYB83        <---
                      *TSS     --------->MYB46(3)          --------->At4g35610    --------->ARR11(3)
--------->GT1 ----------->GT1--------->MYB52(1)            <---------At4g35610    <---------ARR11(3)
---->DOF2    --------->DAG2--------->MYB46(3)              --------->ZAT2   ----------->GT1   <-----
--YAB1     ---------->DOF2 ------>ZmHOX2a(2)        --------->MYB52(1)<---------MYB52(1)<---------TOE2(3)
 
agagtaagaagagggaaaggtaaaatttgatccaacggctgtgattggtttaatctatcggaagctggatgccgttggatggtgagatatcaacgttgag  3963600
             --------->ALFIN1
          ----------->ARR10                                                               <---------ANAC55(2)
      <---------ANAC46                                                           <---------YAB1
      ----------->GT1                                                          --------->ATHB51
      <---------ANAC58                                                         <--------ATHB1
      <---------ANAC58                                                         --------->YAB1
      <------MYB46(1)                                                          -------->ATHB1
      <------MYB83                                                             <---------ICU4
     --------->MYB55(2)                                                        --------->ATHB12
     <---------MYB46(3)                                                       <<<<<<<<<<AGL24
    <---------MYB55(1)       <---------YAB1          <---------ARR14(2)       <<<<<<<<<<AGL22
   <---------MYB52(1)    <----------DOF2             --------->ARR14(2)       <---------YAB1
  <-------GAMYB--------->ALFIN1  --------->ATHB12  <---------DEAR3(2)         <<<<<<<<<<AGL20
 <---------ANAC58        <---------DAG2            <---------MYB46(3)         --------->ICU4
 <---------ANAC58   <---------At4g35610           --------->ETT(1)            <---------ATHB51
 <---------ANAC46   --------->At4g35610    <---------YAB1     <---------ALFIN1<---------ATHB12
--------DEAR3(1)  <---------PCF2<---------YAB1    <---------DREB2C(2)       --------->WOX13(1)   ---
---ZmHOX2a(1)--------->CCA1(2)--------->TOE2(3)   <---------DEAR3(1)      ----------------->AGL3 ---
----TOE2(3) --------->ARR11(3)--------->YAB1  <---------WOX13(1)    ------>ZmHOX2a(1) <-----------HVH21
 
gatggcgttgggtaagatgtgggagctactttatgttaattggattgtgattgtcggttcttccttcactcctacataccaattattgttgtcacatgaa  3963700
      --------->ARR11(3)
      <---------ARR11(3)                                                              <---------AHL20(2)
      --------->GLK1(2)                                                             <---------YAB1
     --------->RVE1(1)                                                        --------->GLK1(2)
     --------->CCA1(1)                                                       <---------GLK1(2)  ----
   --------->AHL20(2)                                 <---------ANAC55(2)    <---------ARR11(3) ----
------>YAB1                                           --------->ANAC55(2)  --------->ICU4<----------
-------->GT1                  --------->ATHB12 ---------->DOF2 <---------MYB52(1)<---------YAB1 ----
 
tagtaaaaaaatctctaacattggagtcttggaccattggtctaacatagaaaagataagtatttcggtagtaatgtcaagattcttattattttccaaa  3963800
                                                     <-------TEIL
                                              <-----------HVH21
                                             --------->O2
                                             =====================================bZIP_DOF
                                             --------->ANAC58
                                             --------->bZIP60(2)
                                    --------->ANAC55(1)
                           <---------MYB46(3)<---------O2
 <---------MYB52(2)     ===============================bZIP_DOF                                   --
----->ANAC58            <----------DOF2      --------->TGA1a                              --------->At4g35610
----->ANAC46       --------->ARR11(3)        --------->ANAC55(1)                 <------ZmHOX2a(1)<-
-GT1               <---------ARR11(3)        --------->ANAC58                <---------SPL7<------ZmHOX2a(1)
----->ANAC58      --------->At4g35610        --------->ANAC46          ---------->DOF2  <-----------RAV1(2)
 
cgcaacttacaattttagagaagctctctttggttacacacttaatacacgtcaaatgcataaacaaactcatcaaaagccgtaggaacaggcaggagca  3963900
                                                                                ----------->GT1
                                                                                --------->LBD16
                                                                               <---------ANAC46
                                                                        --------->YAB1
                                                                       ----------->HVH21
                                                                   <---------ANAC58
                                                    --------->AHL20(2)--------->SPL7
               ----------->HVH21             ----------->GT1       <---------ANAC55(2)
             --------->ALFIN1               --------->LBD16        <---------ANAC55(1)            <-
       <---------YAB1                     <---------LBD16          --------->ANAC55(2)         <----
       --------->ICU4                    <---------ALFIN1          <---------ANAC46    ----------->GT1
------->ARR11(3)                        --------->MYB46(3)         <---------ANAC58    --------->YAB1
--------ARR11(3)         <---------AHL20(2)--------->ANAC46  <---------YAB1   <---------LBD16 <-----
 
ataccttgtaatgagtgtgtgacagtataaaatcgagctaagaaccacgggaaaaaaaaatggtctcattgcgtatgacaatgcggagaatagtaaatca  3964000
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AGI:  At5g12250.1   
Description:  TUB6 (BETA-6 TUBULIN). Identical to Tubulin beta-6 chain (TUBB6) [Arabidopsis Thaliana] (GB:P29514); similar to TUB2 (Tubulin beta-2), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62690.1); similar to TUB8 (tubulin beta-8) [Arabidopsis thaliana] (TAIR:AT5G23860.1); similar to TUB3 (TUBULIN BETA-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64894.1); similar to tubulin B4 [Glycine max] (GB:AAX86048.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67326.1); contains InterPro domain Beta tubulin, autoregulation binding site (InterPro:IPR013838); c
Range:  from: 3961107    to: 3963523    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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