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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                                ----
                                                                                              ------
                                                                                        <-----------GT1
                                                                                  <---------ANAC46
                                                                                  <---------ANAC55(2)
                                                                                  --------->ANAC55(2)
                                                                                  <---------ANAC58
                          --------->ANAC55(2)                                     <---------ANAC55(1)
                        <-----------GT1                 <----------DOF2           <---------ANAC58
             --------->WOX13(1)                        <---------ANAC58         <-----------GT1 <---
           <---------ATHB12                <---------ANAC46        <---------AHL20(2)------->TEIL
-----------GT1   ----------->GT1      <---------ZAT6   <---------ANAC58      <---------ICU4   <-----
 
aataactcatccctatcaatctgtaatttacgagattagtactgttgagtttagttttgctttgaagtattttttttggataattacgtatttacatctt  3911000
                                                                              <---------ANAC58
        <---------At5g28300                                            --------->AHL20(2)
       <-----------GT1                        --------->TOE2(3)       <---------AHL20(2)
----->AHL20(2)      --------->ARR14(2)        --------->TOE1(3)       --------->AHL20(2)       -----
--->TOE2(3)      <---------ANAC46     <----------DOF2     <---------YAB1<---------YAB1     <--------
------AHL20(2) <-------GAMYB        <-------TEIL <---------AHL20(2)  --------->AHL20(2)   <---------YAB1
-----DOF2   <---------ANAC46<------ZmHOX2a(2)----------->GT1  ----------->GT1 <---------ANAC58 <----
 
taaataggtttcactgtgtgttgtatatgcgatccaaggtgctttgaatcgttaaattgatatgatggtgaaattaatatagcttactatctcattagtg  3911100
         ----------->HVH21
       --------->O2
       <---------TGA1a
       --------->TGA1a
       --------->ANAC55(2)
--------->ANAC58                                                          <---------ANAC58
--------->ANAC58                                                          <---------ANAC58         -
--------->ANAC46                                                          <---------ANAC46 ---------
---->ZAT18                                                                <---------bZIP60(2)      -
-ICU4  <---------O2                                                    ----------->HVH21 --------->ALFIN1
-----ZAT18     ----------->GT1   <------NtERF2               <-----------GT1           <---------ANAC46
 
cataagccaaacgtgacaaggtaactcatacatggcagagagaacattgctctgcaatagcttcttaccttgttgtgacctgtgatactagtgtgtgaca  3911200
                                                                                              <-----
                                                                                           <--------
                                                         --------->AHL20(2)              <---------ICU4
                                                   --------->ANAC46                      --------->YAB1
              ---------->DOF2 <----------DOF2      --------->ANAC58                      -------->HAHB4
    ----------->GT1    ------>ZmHOX2a(1)           --------->ANAC58                     <---------YAB1
-------->ANAC58       --------->TOE2(3)       --------->YAB1    ------------>CBF        --------->ICU4
-->HVH21   ----------->GT1    --------->TOE2(3)   --------->WOX13(1)         <---------AHL20(2) ----
-------->ANAC58       --------->TOE1(3)  ----------->GT1<---------ATHB12     --------->AHL20(2)-----
 
acaagaaatgaaaaatgtaaagtttccttaaaactttaatcaaacagtataatcaagcaatgaaatgaacaattttgtttttaatttcaaaatgattatc  3911300
                                                                            <------NtERF2
                                                                            <---------At4g35610
                                                                            --------->ZAT2
                                                                            <---------ZAT2
                                                                            --------->At4g35610
                                                                         <------NtERF2
                                                                         --------->ATERF1(1)
                                                                         <---------MYB52(1)
                                                                        ------>NtERF2
                                                                        --------->LBD16
                                                                        <---------ATERF1(1)
                                                                        <-----------HVH21
                                                                       <---------ATERF1(2)
                                                                       --------->DEAR3(1)
                                 <---------TOE1(3)                     <---------DEAR3(1)
                              <---------AHL20(2)                       --------->ATERF1(2)
                  --------->ARR14(2)                                  --------->ATERF1(1)
                  <---------ARR14(2)                                  <------NtERF2
                  --------->KAN4(2)                                   --------->RAP2.3(1)
                 --------->HSFB2a(1)                                 <---------ATERF1(1)
                 <---------KAN4(1)                                   ------>NtERF2
                 <---------HSFB2a(1)                   <---------DAG2<---------RAP2.3(1)
                 <----------TaMYB80            <---------YAB1       <---------DEAR3(1)
                 --------->KAN4(1)             <---------TOE1(3)    --------->DEAR3(1)
----YAB1        <---------KAN4(2)<---------TOE2(3)     <----------DOF2<---------LBD16
-YAB1           <---------ARR14(2)             <---------TOE2(3)  <-----------HVH21
------>DOF2     ---------->TaMYB80          <---------MYB52(1)    <---------ATERF1(1)
---->YAB1       --------->ARR14(2)----------->GT1  <-------TEIL*TSS--------->ATERF1(1)<---------MYB46(3)
 
aaagttctattcatgtccgaatattcgttttattttaaggttatttcgttaagattcacttttgcagagcgtcgccggcagctcaacgatggtgactcgc  3911400
                            <---------ALFIN1
                         --------->bZIP60(1)                                                 ------>MYB83
                         <---------bZIP60(1)                                                 -------
                         <---------ANAC55(2)                                                 ------>MYB46(1)
                         --------->ANAC46                                                  <--------
                         --------->ANAC58                                                  <--------
                         --------->ANAC55(2)                                               <--------
                         --------->ANAC58                                                  ------->GAMYB
                      <---------MYB52(1)                                                   ---------
               ------>ZmHOX2a(2)                                                           ---------
             <---------ARR14(3)                                                            ---------
             --------->ARR14(3)        --------->ZAT18                                     ---------
             --------->ARR11(3)        <---------ZAT14                                     <--------
             --------->AGP1 --------->DEAR3(1)                                             ---------
             <-----------ARR10         --------->ZAT14                                     ---------
             <---------ARR11(3)  <---------MYB52(1)                                       --------->DEAR3(2)
             <---------ARR14(2) <-----------HVH21                                       <---------ALFIN1
             --------->ARR14(2)--------->DREB2C(2)                                     --------->MYB46(3)
          <---------HSFB2a(2) <------NtERF2             --------->ZAT2                ------>NtERF2
          --------->HSFB2a(2)------>NtERF2 ----------->HVH21             <---------CCA1(2)--------->MYB46(3)
--------->ZAT6<------ZmHOX2a(2)--------->DEAR3(1) <-----------HVH21   <------NtERF2------>NtERF2 ---
 
ttaagactcgtttcgagatcttctcgttacgccaccgtcaagttcactgactctgtctcagcatgctcatgtcgtcgtctcttctctgcctccaccgacc  3911500
      --------->ARR14(2)
      --------->GLK1(2)
      <---------ARR14(2)                                          --------->HSFB2a(1)
      ------->TEIL                                                <---------HSFB2a(1)
      <-----------ARR10                                           <---------HSFC1(2)
      <---------ARR11(1)                 ----------->HVH21       ---------->TaMYB80
     <---------ARR14(1)            ------->TEIL                  --------->ARR14(2)
     <---------GLK1(2)             --------->ARR14(2)        --------->ANAC55(2)
------->TEIL                 --------->DEAR3(1)         --------->ANAC58
->P  <---------CCA1(2)     --------->LBD16         --------->ANAC58
-MYB111(1)                 ------>NtERF2<-----------TGA1--------->ANAC58                 --------->GLK1(2)
-MYB55(2)                  <---------ATERF1(1)     --------->ANAC58       --------->ARR11(3)
-MYB46(2)                 --------->ANAC58    --------->LBD16--------->ANAC46           --------->ARR14(2)
>DEAR4(1)                 <---------ALFIN1  <---------LBD16  --------->ANAC58           <---------ARR14(2)
>MYB46(3)                 --------->DEAR3(1)--------->At4g35610 <---------GLK1(2)   --------->ZAT2
>DEAR3(1)                 --------->ANAC58  <---------At4g35610 --------->ARR14(2)  --------->At4g35610
>DREB2C(2)           --------->ANAC58  --------->ANAC55(2)   <---------ANAC55(2)    <---------ZAT2
-MYB111(2)           --------->ANAC46  <---------ANAC55(2)   --------->ANAC58       <---------At4g35610
>AtMYB61             --------->ANAC58  --------->ANAC46--------->DAG2     <---------ARR11(3)       -
-->HVH21           ---------->DOF2 <---------ARR14(2) ---------->DOF2  --------->LBD16  <---------GLK1(2)
------>LBD16-------->P   <---------LBD16<-----------HVH21   <---------LBD16        ----------->RAV1(1)
 
ccgaacccgaatctcaacccgaacaagccccgcctacgaatcccgtcaccggagacgaaaagctacggaatctccgagttcttctccagcagaatcgaat  3911600
           <---------ANAC58
           <---------ANAC46
           <---------ANAC58
          <------NtERF2
        --------->ALFIN1
       <-------MYC3
       <-------MYC2
       ------->PIF5
       ------->MYC2
       ------->MYC3
       <-------PIF5                            <----------DOF2
      --------->ALFIN1                        <---------DAG2
      <---------ANAC58                      ------>NtERF2                    <----------DOF2
      <---------ANAC46               <---------GLK1(2)                       <---------DAG2       <-
      <---------ANAC58               <---------ARR14(2)                    --------->LBD16       <--
      <------NtERF2                  --------->ARR14(2)                   --------->ANAC46     -----
      <---------TGA1a             ------>ZmHOX2a(2)    --------->DEAR3(1)<---------LBD16       <----
     ------>NtERF2        <---------ZAT2   --------->ANAC58       <---------ARR11(3)      --------->At4g35610
    <---------ANAC46      --------->ZAT2   --------->ANAC58       --------->ARR11(3)   <---------YAB1
-------->MYB52(1)      <---------At4g35610 --------->ANAC46 ---------->DOF2------>NtERF2--------->YAB1
 
cgaaacggcgcgtggcgttctctcttcgctgcttcgatcggattctacgcctttcgcatcgccgaaagagctcttctccgccttctcgttatcatctccg  3911700
                                                                         --------->GLK1(1)
                                                                        --------->ARR14(2)
                                                                      --------->LBD16
                                                                     <---------ANAC46
                                                                 --------->ZAT2
                                --------->LBD16                  <---------ZAT2  ---------->ID1    <
                               <---------ANAC58          <---------GLK1(1)      <-----------GT1    -
------GAMYB                    <---------ANAC58        --------->ATHB12 <---------ARR14(2)       <--
-------MYB46(3)        <---------ANAC58               <---------YAB1<---------LBD16        <------ZmHOX2a(1)
---->LBD16             <---------ANAC58       ------->TEIL       <---------At4g35610     <---------TOE2(3)
-------HVH21     ------>ZmHOX2a(1)       --------->MYB52(1)      --------->At4g35610 <----------DOF2
 
tcgttgaaacacgatttctcctacttgcttctctccgtgctactaaacgaatcgaagatgatttctgaagctgcggatttgtttttcgctttgaggaatg  3911800
                        <---------DOF5.7(2)
                      --------->DOF5.7(2)
                     --------->TOE2(3)
                   <-------TEIL                                                                    <
                 <---------ARR14(2)                                                                -
           --------->ZAT2    <----------DOF2                                                       -
           --------->At4g35610                                                                     -
           <---------At4g35610    <---------ANAC58                                                <-
           <---------ZAT2<---------TOE2(3)                                                     -----
---------ARR11(3)<---------GLK1(2)<---------ANAC58   --------->ANAC46                     <---------KAN4(1)
-------->ARR11(3)--------->ARR14(2)<---------WOX13(1)--------->ANAC58          ------->MYC3    <----
-------TOE2(3) ----------->ARR10  <---------AtLEC2   --------->ANAC58          <-------MYC3---------
 
aaggtatttatcccagctcagattcgttaacgcttttgcttgatcatcttgtgaagacgaaacaattcagagtgactataaacgtgtttttgaacattct  3911900
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AGI:  At5g12100.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G65560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15979.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 3911364    to: 3914081    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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