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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                --------->At5g28300
                               ----------->GT1
                             <---------ZAT14
                           ------>ZmHOX2a(2)
                          <------ZmHOX2a(2)
                         --------->ARR14(2)
                         --------->ARR11(3)                              <---------ANAC46
                         <---------ARR14(3)                              <---------ANAC58
                         --------->ARR14(3)                              <---------ANAC58
                         <---------ARR11(3)                          <-------GAMYB
                         --------->AGP1                             <------MYB83
                         <---------ARR14(2)       ---------->DOF2   <------MYB46(1)
           ---------->DOF2--------->CCA1(2)     <-------TEIL--------->ANAC55(2)
      --------->CCA1(2)  <---------AGP1   ---------->DOF2   ----------->GT1
     <---------ARR11(3) --------->RVE1(1)--------->AHL20(2)<---------TOE1(3)
-------ANAC58          ----------->ARR10 <---------AHL20(2)<---------TOE2(3)
-------ANAC46        ---------->DOF2  --------->YAB1      <-----------RAV1(2)     ----------->GT1
-------ANAC58----------->GT1 --------->ZAT14   --------->CCA1(2)   --------->MYB59<---------YAB1
 
gcctacaagataaacaaagaaaaaaaaagatctgcagtgaataataaaagattcaaagtgttcaggtaatttggttgagtatgtgatgaaaattgtctaa  3854600
                                                                          ------->TEIL
                                                                --------->ANAC58
                                                             <---------ARR14(2)
                                                          --------->AHL20(2) ---------->DOF2
                                                        ----------->GT1 --------->ZAT18
                                               <------ZmHOX2a(1)--------->ANAC46               -----
                        <---------AHL20(2)    ----------->GT1--------->ARR14(2)                <----
           --------->AHL20(2)                <---------TOE2(3)  --------->ANAC58         <----------
 
tggtttcaagaaaaaaaaatcaagtttttatttgaattttggatttttgaggaaaaaacatgtaaatacgctaaatgcaccaaagtgatgtttttcaaca  3854700
                                                                          <----------DOF2
                                                              --------->ANAC46
                           ---------->DOF2                    ------->GAMYB
                         <---------AHL20(2)                   --------->RAP2.6(2)
                      <---------AHL20(2)                      --------->DEAR3(1)                   <
                     <---------AHL20(2)                      --------->MYB46(3)                 ----
                     --------->AHL20(2)   <---------YAB1    <---------At5g28300   <-----------GT1  -
---->ARR11(3)  <---------MYB52(1)  <---------AHL20(2)      --------->MYB52(1) <---------AHL20(2)----
-----ARR11(3)--------->MYB59<---------TOE2(3)        <------ZmHOX2a(2) <-----------GT1      <-------
-GT1    <---------MYB52(1)<---------AHL20(2) ------->TEIL  <-----------GT1<---------DAG2  --------->ANAC46
 
tcttgttaactgttattcggtagattaatttaaagtattttttttatgaaactccgatcgattaaccgccaaaataactttttatttacctccaagatac  3854800
                               --------->ICU4
                               <---------YAB1
                             <---------ICU4
                             <--------HAHB4
                             -------->HAHB4
                             <---------AHL20(2)
                             -------->ATHB1
                             --------->ATHB51
                             --------->YAB1
         --------->ANAC46   --------->ICU4
        --------->MYB46(3)<---------ICU4
    <---------YAB1        --------->ATHB51
  <---------ICU4          <--------ATHB1
  <--------HAHB4          -------->HAHB4
  --------->YAB1          <--------HAHB4
 <---------ATHB12         --------->YAB1
 --------->ICU4          <---------YAB1
 <---------YAB1          <---------ATHB51
---------ICU4            --------->AHL20(2)
----->YAB1  <---------ALFIN1<---------ATHB51                                     --------->GLK1(1)
-------->YAB1            --------->ICU4           ----------->GT1        ---------->DOF2
----->TOE2(3)       --------->TOE2(3)        --------->YAB1      <---------AHL20(2)
--ARR11(3) --------->ANAC46 <---------YAB1  <---------YAB1       --------->AHL20(2)    ------------>CBF
 
cataatcattatccaccacattttcttaataattattattaagctctataattctgtaaaaaacccatttaaatacaaaagccgatttcttccaatctca  3854900
                                                       <---------ANAC58
                                                       <---------ANAC46    <---------ANAC58
                                                 <---------TOE2(3)  *TSS   <---------ANAC58
                                               ---------->DOF2     --------->ZAT14
                                            --------->ANAC58      <---------DAG2     <----------DOF2
                                            --------->ANAC58      <----------DOF2    <---------MYB52(1)
                  <---------YAB1        <-----------HVH21      <-----------GT1    <---------ALFIN1
          <-----------GT1               <-----------TGA1      ---------->ID1     ------>NtERF2     <
        <-----------GT1              --------->ARR14(2)<---------ANAC58<----------DOF2             <
 
agttagagttttttctccattttgtttgcattctatatagtatcgtcacacaaaggtttcgtcttgtcactttactttgtttgcccccctttggtttttt  3855000
                                                               <---------------AGL15
                                                               --------------->AGL15
                                                              ----------------->AGL2
                                                              <-----------------AGL2
                                                              <-----------------AGL3
                                                      <---------ARR11(3)                   <--------
                                             --------->ATHB12 ----------------->AGL3       ---------
                                          --------->TOE2(3)   ----------------->AGL1   <---------At4g35610
          <----------DOF2               --------->ARR11(3)  <-----------GT1       --------->At4g35610
---------ANAC58                 --------->MYB52(1)    --------->ARR11(3)   <---------ARR11(3)
---------ANAC58              ----------->RAV1(2)      <---------GLK1(2)    --------->ARR11(3)<------
 
gtgcttcccttctcttttttttttgtttgacgacctgagggaataccttgatttgtagatttttatccattaatggaagataatcagcgaagcagattca  3855100
                --------->LBD16
               <---------ANAC46
               <---------HSFB2a(2)
 --------->GLK1(2)--------->SPL7
 <---------ARR11(3)--------->ANAC58
 --------->ARR11(3)--------->ANAC58                                             <---------MYB52(1)
-ARR14(2)      --------->HSFB2a(2)                     ------>NtERF2<------NtERF2
>ARR14(2)     <---------LBD16                       <---------At4g35610    ------->TEIL
-TEIL     <----------DOF2    <-----------HVH21      --------->At4g35610 <---------ATHB12          <-
 
gaaaaatctgtgtcttttgcggaagccactctggtcacagagaagttttcagtgatgctgccatcgaactcggcaatgaactcgtttgctctctatctct  3855200
                 <---------ANAC58                                         <-----------GT1
                 <---------ANAC58                                      <---------GLK1(1)
              <---------WOX13(1)                                       --------->GLK1(1)
            --------->ATHB12                      <----------DOF2     --------->ARR11(3)
           <---------YAB1  <------MYB83--------->AHL20(2)     <---------ICU4
        <----------DOF2    <------MYB46(1)        <---------DAG2      <---------ARR11(3)
-----------------------ANAC81     <---------YAB1------->TEIL <---------ATHB12                <------
 
cttctcttcttcttttgattgcttcttgtttggttttgtgataaaaatatgaacttttcttcaaatcaatacagatatcaccttcgctcggtttttgaat  3855300
                                                      --------->AHL20(2)
                                                      <---------AHL20(2)
                                              <---------ANAC46
                                              <------MYB46(1)
                                              <------MYB83
                                             --------->MYB46(2)           --------->YAB1
                                             <---------MYB46(3)    <---------ANAC58
                     <---------ANAC58        --------->MYB55(2)<---------ANAC58
          <----------DOF2                    <---------AtMYB61 <---------ANAC58  <----------DOF2
        ------->TEIL <---------ANAC58        --------->MYB111(2)   <---------ANAC46
---AtLEC2 <---------DAG2                     --------->MYB111(1)   <---------ANAC58   ---------->ID1
 
gtcaaaatacgaactttttagtttacttgttcatttcaaacaatgggtttggtggattttatttgtgcttgcgtctattgtaagcttttgtggtatttgg  3855400
           --------->AHL20(2)
         <----------DOF2
   --------->WRKY38(1)                                                                 <---------AHL20(2)
 <-------GAMYB                            ----------->GT1                              --------->AHL20(2)
--------->MYB52(2)             --------->At4g35610                               <---------MYB52(1)
<---------MYB46(3)             <---------At4g35610         --------->ALFIN1  ------>ZmHOX2a(1)    <-
 
ggtttgttgactctttaaatctaggcatgttgtcatttgacaaaactgtgaaatttcttcaagtgttgaaatgggtcttcctctgtttttttaaatgtgt  3855500
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AGI:  At5g11950.1   
Description:  Identical to Lysine decarboxylase-like protein At5g11950 [Arabidopsis Thaliana] (GB:Q84MC2;GB:Q570P8;GB:Q9LYH8); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G37210.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81797.1); contains InterPro domain Conserved hypothetical protein CHP00730 (InterPro:IPR005269)
Range:  from: 3854969    to: 3856984    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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