Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                  -----                    <------MYB83                                                   <-----------GT1<--                    <------MYB46(1)                                              --------->AHL20(2)                    <---------ANAC46                                             <---------AHL20(2)--                   <------MYB83                                        --------->LBD16          <----                 <<<<<<<<<MYB98                                       <---------ANAC46          -----                 <--------P                                           <---------ANAC58          <----                <-------GAMYB              <---------WRKY18(1)        <---------ANAC58          <----         --------->ZAT14              <---------YAB1                 <---------LBD16          <------   <-----------GT1 <------MYB46(1)<----------DOF2         <---------ZAT6  <--------P        <-------- --TEIL  <---------ZAT14          <---------DAG2          ----------->GT1<-------GAMYB     ------>ZmHOX2a(1)   atgtgttactctgcattgggttgggttttggaatcactttattcttgaccatagttgctattgttaaaacttgcgggttgaatttaaacagtcctgtctc  3679400       --------->ALFIN1   --------->ZAT14   <---------ZAT14 <---------WOX13(1) ---->ANAC55(2) -------YAB1 ------->ATHB12 -----ANAC55(2)                       --------->LBD16 ---->O2 <------MYB46(1)             <---------ANAC58                                           <---- -----ANAC46            <-----------GT1                                                   <---------MYB46(3) -----O2<---------MYB46(3) <---------ZAT6                        <---------DAG2         <---------ANAC58 -------DYT1      ----------->GT1   <---------LBD16              <----------DOF2        <---------ANAC46 ---HVH21<------MYB83  <---------YAB1<---------ANAC58      --------->ZAT6               <---------ANAC58   gtgattgcagtgggtctatcgggttattactgtaagttagcggggctagtcactagtgcttagactacttttttttagcgaccatagttggcttgttgat  3679500                         --------->TCP16(1)                         --------->PCF5                         <---------PCF2                        <------NtERF2                        --------->ATERF1(1)                   <---------YAB1                   <-----------RAV1(1)                 <---------ICU4                 -------->HAHB4                <---------ATHB51                                        <---------GLK1(1)                --------->ICU4                                   ------->TEIL                <---------YAB1                                 <---------ZAT18              <---------ICU4                                <------MYB46(1)               <---------AHL20(2)              --------->YAB1                                <------MYB83--------->GLK1(1)<---------AHL20(2)             <---------AHL20(2)                            <---------AtMYB61             --------->AHL20(2)             --------->AHL20(2)    --------->ATHB12       <---------MYB52(1)          <---------AHL20(2)             --------->ICU4<------NtERF2                <-----------RAV1(1)          --------->AHL20(2)    --------->ATHB12   <---------ATERF1(1)             <------------AtMYB77  --------->MYB52(1)   <---------YAB1--------->YAB1--------->DAG2   --------->YAB1 <---------ZAT14<---------TOE2(3) -----YAB1   <---------ATHB51 ---------->DOF2  <---------ATHB12--------->ZAT18<---------TOE1(3)   gatatatgatttgaaataattatggtggcccctaaagtgatttgaatcaataatccaactgttggtgtacttggaaatctaagggtattaaataaatctg  3679600                                                                                             <-------MYC2                                                                                             ------->MYC3                                                                                             ------->MYC2                                                                                             <-------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            ---------                                                                 <---------MYB52(1)         ---------                                                         <---------ICU4                     <--------                                                      <---------ICU4                        ---------                                                     --------->ICU4                         ---------                                                     <---------ATHB51                 <------ZmHOX2a(1)                                                 --------->AHL20(2)                --------->CCA1(2)                     ---------->DOF2   <------ZmHOX2a(1)--------->ICU4        ---------->DOF2<-------MYC3                 <----------ID1      <---------TOE2(3)--------->YAB1     --------------->AGL15                ----------->GT1    --------->MYB52(1)<---------AHL20(2)  <---------------AGL15              --------->DAG2       ---------->DOF2   --------->AHL20(2) ----------------->AGL3-------             ---------->DOF2----------->GT1--------->ANAC58     =====================================       ----------->GT1     ----------->GT1 --------->ANAC58     <-------GAMYB =======================   agtgaaaatttgaaaaaaagggaaaaagaagggaaaataaaggataagaaactaaataattatgtccgttaaatactaaaaaaagataggagacacgtga  3679700   --------->AHL20(1)   <---------AHL20(1)   --------->ARR11(3)   <---------ARR11(3) ----HVH21 >ANAC58 -O2 >ANAC46 -ANAC55(2)                                                                     <---------ANAC58 >O2--------->AHL20(2)                                                          <---------ANAC46 >ANAC55(1)        <---------ZAT2                                               <---------ANAC58 >ANAC55(2)        <---------At4g35610                                     <------------CBF >TGA1a            --------->At4g35610                                  --------->TOE2(3) -TGA1a --------->AHL20(2)   <---------TOE2(3)                       ------>MYB46(1) >ANAC58<---------AHL20(2)   <---------YAB1       ------------------------>ANAC81 >bZIP60(2)      <---------RAP2.6(2)             xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---->HVH21      <---------DEAR3(1)      --------->At4g35610         ------>MYB83             <------ =MYC_MYB       --------->RAP2.6(3)     --------->DEAR3(1)           --------->MYB52(1)      -------- =bZIP_DOF      <---------ORA47(1) ----------->ARR10               --------->AtMYB61         <-------   ccgaaaatatttaaaatggacggctgagattaagactgagagccgctcaaaaaaaaaaaaaaaaaaaaaccaaacgttattgacttgtatagggtttgtt  3679800                                                              <---------MYB52(1)                                                         <---------RAP2.6(3)                                                         ------>NtERF2                             ------>NtERF2              --------->ETT(2)                             --------->LBD16            <---------ETT(2)                            --------->ANAC46            ----------->HVH21         *TSS            --------->ARR14(2)             --------->DEAR3(1)    <------ZmHOX2a(1)    <---------ARR14(2)            --------->DEAR3(2)        <<<<<<<<<GATA-1 -GAMYB  <----------DOF2<---------GLK1(1)             <---------At4g35610       <-----------GT1 ->MYB52(2)  <---------TOE2(3)                        --------->At4g35610   <----------DOF2  -------- --MYB46(3) <-----------GT1<---------LBD16            ------>NtERF2 <---------GLK1(1)      <---------LBD16   gaagaaggagactttaacatttttgaatttccgccagtcttgttttgaaatagctctgccgaccgtttagatttctctcttttatctatcttctctggga  3679900                                ================================HOX2a_HOX2a                               <------ZmHOX2a(2)                 <----------DOF2------>ZmHOX2a(2)                        --------->ATHB12        --------->AHL20(2)     =================================HOX2a_HOX2a          <----------DOF2       <---------ATHB12       <---------ARR14(2)                        <---------YAB1      <--------     --------->WOX13(1)       --------->ARR11(3)             --------->GLK1(1)    <-----------GT1 ->LBD16<---------AHL20(2)    --------->ARR14(2)         <------ZmHOX2a(1) <---------WOX13(1)   aaattttcaattaatctctctttattaactcagatcgtgaacatttatctccgattggaggagatttctagtttttgattggatttactttgggcatttt  3680000                        <---------MYB52(1)                       <-------GAMYB                 --------->ARR14(2)            <---------ALFIN1        <---------TOE2(2)                 <---------ARR14(2)           --------->MYB46(3)  --------->ANAC58           <---------LBD16                   ------->TEIL         --------->ANAC58         --------->GLK1(2)                  <-----------GT1    --------->ZAT2                   <---- --DOF2 <---------GLK1(2)                --------------->AtSPL8<---------At4g35610 <---------YAB1   ggtctctccagtttctgggtatcgtcgttgtctctctccgatttatgaaccacttccatttctgaagctcgcataggtttgttttatgactccatggttc  3680100                          --------->ATHB12               ------>ZmHOX2a(2)               <------MYB46(1)                         <---------ARR11(3)               <---------MYB46(3)                   <----------DOF2               <------MYB83                         <---------WOX13(1)              <---------AtMYB61                   --------->At4g35610             <--------P  <---------YAB1  --------->AHL20(2)          <---------TOE2(3)              <---------AHL20(1)      ------->TEIL   <---------ANAC58    <---------AHL20(2)                     <---------ICU4     -- -------------AGL3   <---------ANAC58    --------->AHL20(1)             <----------DOF2       -------   tatatttgaatctaggttggtttgggtatgatttgattttgaatttattgtctgcttgatctaaatagtttgctctttttaaaaatgactgcgaacaaaa  3680200                                                                  <---------DAG2     ------>ZmHOX2a(1)                                                                ------>MYB83<---------At4g35610                          <-----------GT1                       ------>MYB46(1)     --------->TOE2(3)                      --------->ATHB51                        ------->GAMYB --------->At4g35610                      <---------ICU4                --------->ATHB12        --------->ZAT2                      <---------AHL20(2)           <---------YAB1 <----------DOF2   --------->TOE1(3)                      --------->AHL20(2)           --------->ICU4<-----------------AGL3  <---------ZAT6     --------->ICU4  <---------YAB1                ------>ZmHOX2a(1)        <---------ZAT2       <--- ------->ZAT18       --------->ICU4             ---------->ID1--------->DREB2C(2)--------->ARR14(2) --->DOF2         <---------YAB1    --------->HSFB2a(2)      --------->DEAR3(2)  <---------ARR14(2) <   gttcacaattagtagtcattgtaattattttcaagcttcgagtatgttttgtcctgattagcgaccgactttttttggagctgaatccttagtgtttttt  3680300  Previous    Next  AGI:  At5g11500.1    Description:  similar to unknown [Brassica juncea] (GB:ABX10747.1); contains InterPro domain Protein of unknown function DUF814 (InterPro:IPR008532) Range:  from: 3676580    to: 3679353    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g11510.1    Description:  MYB3R-4 (C-MYB-LIKE TRANSCRIPTION FACTOR 3R-4, myb domain protein 3R-4); DNA binding / transcription coactivator/ transcription factor. similar to PC-MYB1 (myb domain protein 3R1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G32730.2); similar to Myb [Nicotiana tabacum] (GB:BAB70511.1); contains InterPro domain Myb transcription factor (InterPro:IPR015495); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778) Range:  from: 3679809    to: 3684878    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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