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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-------
TEIL
--------->
CCA1(2)
--------->
GLK1(2)
--------->
ARR14(1)
--------->
ARR14(2)
<---------
HSFB2a(2)
<---------
GLK1(2)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ARR11(3)
<-------
TEIL
----------->
ARR10
<---------
ARR14(2)
---->
YAB1
<---------
ANAC58
--------->
ARR14(2)
----
ATHB51
<---------
ANAC46
--------->
HSFB2a(2)
------->
AGL1
<---------
ANAC58
---------->
DOF2
<---------
ZAT6
--------
AGL1
--------->
ALFIN1
--------->
ANAC46
<---------
HSFB2a(2)
atggtatgggttcaacagtggcgagattcgatttagacgcgaatgagaaaagggttcgagatactgttaccgaaggcttagggtttaagaaactgaaatg
3671400
<---------
ARR14(2)
--------->
ARR14(2)
<---------
HSFB2a(2)
<-----------
ARR10
--------->
HSFB2a(2)
----------->
GT1
<---------
ANAC46
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ARR14(2)
<---------
GLK1(2)
--------->
HSFB2a(1)
<---------
GLK1(2)
--------->
YAB1
<---------------
AGL15
<---------
HSFB2a(1)
--------->
CCA1(2)
<-------
TEIL
<---------
CCA1(2)
---------->
DOF2
<------
ZmHOX2a(1)
<---------
HSFB2a(1)
------>
ZmHOX2a(2)
<---
cgaagaagagagagagaaagaaggtttcgcgaggattgagagatggaatcttggaagatgcgctaaaatcat
atctgatcgattctcttctaagtaatag
3671500
<------
NtERF2
<---------
LBD16
<---------
DEAR3(1)
--------->
ALFIN1
*
TSS
<---------
AtMYB61
<------
ZmHOX2a(1)
--------->
LBD16
<---------
LBD16
<---------
ARR14(2)
<---------
ANAC46
<---------
LBD16
--------->
ZAT2
--------->
ANAC55(2)
<---------
ZAT2
<------
ZmHOX2a(1)
<---------
ANAC46
<---------
ARR14(2)
<---------
At4g35610
<---------
ANAC55(2)
--------->
ARR14(2)
--------->
At4g35610
<---------
ZAT14
--------->
ALFIN1
<---------
ARR11(3)
--------->
GLK1(2)
<---------
REM1(1)
--------->
ARR14(2)
------------>
CBF
<----------
DOF2
<---------
GLK1(2)
------->
TEIL
<---------
LBD16
<-----------
HVH21
------
ZAT6
<----------
DOF2
--------->
RAP2.3(3)
--------->
MYB52(1)
<---------
ANAC46
--------
tcttatgagctttttagttctctttagattctgtgagcagccatggatgtaggactgaacttacggatgcggagg
aggtcggggaaacaatatccacatc
3671600
<---------
YAB1
<---------
TOE2(3)
<---------
TOE1(3)
<---------
YAB1
<-----------
GT1
<---------
AtMYB61
------------>
CBF
<---------
AHL20(2)
--------->
ANAC46
------>
ZmHOX2a(1)
<----------
DOF2
<-
--------->
ANAC58
<----------
DOF2
<------
NtERF2
<------------
CBF
<-
--------->
ANAC58
--------->
GLK1(2)
--------->
TOE2(3)
<---------
ZAT18
--------->
ATHB12
<-------
->
ANAC46
<---------
YAB1
------->
TEIL
<-----------
GT1
--------->
YAB1
--------
aaaacgctacgttttgatggtggtaatctggacgatgaactttccttatattacaatttgcccgctctattttaacgattgtatcatttcgccactatct
3671700
--
---
------
<---------
At4g35610
<-----
<-------
GAMYB
<---------
ALFIN1
--------->
MYB55(2)
-------
----------->
GT1
--------->
MYB52(2)
-------
--------------
AGL15
----------->
GT1
<---------
DEAR3(1)
--------->
AtMYB61
--------
YAB1
---------->
DOF2
<------
ZmHOX2a(1)
<---------
MYB46(3)
<---------
ALFIN1
--
ARR11(3)
----------->
GT1
--------->
DAG2
--------->
GLK1(2)
------>
ZmHOX2a(1)
---
->
ARR11(3)
----------->
GT1
---------->
DOF2
----------->
GT1
--------->
GLK1(1)
-------
tctaattagagagtaaatgggtaaattagaaagaaaacaaaaagtataaggagtatatagcaaaatcgggtcgttggcatctccttccacctctccaagc
3671800
<-----------
HVH21
----------->
GT1
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<-----------
GT1
<---------
MYB52(1)
------->
DEAR3(1)
--------->
RVE1(1)
<---------
At4g35610
<---------
ARR14(2)
------>
ANAC58
<---------
ARR11(3)
------->
PIF5
--------->
ARR14(2)
<--
--->
ZAT2
--------->
ARR11(3)
--------->
LBD16
--------->
GLK1(2)
<-----
----
ZAT2
--------->
GLK1(2)
<-------
PIF5
<---------
GLK1(2)
<--------
-->
ANAC46
*
TSS
<---------
GLK1(2)
<-----------
GT1
--------->
ARR14(2)
<--------
-->
ANAC58
<---------
ZAT18
<-----------
GT1
<---------
ARR14(2)
<--------
------>
ANAC58
--------->
ZAT14
--------->
AHL20(2)
----------->
ARR10
----------->
HVH21
-->
ANAC58
<---------
ZAT14
<---------
AHL20(2)
--------->
ALFIN1
<---------
MYB46(3)
acggacgagacttcgacc
agtgaaccaaaatctctctcaaatttatcaccccgtgcttctgatcacggtgggattctctccgatcggtgacatatcgtgg
3671900
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ICU4
<---------
ANAC46
--------->
ANAC46
<---------
LBD16
--------->
MYB52(1)
<----------
DOF2
----------->
HVH21
<-----------
HVH21
------>
ZmHOX2a(2)
<---------
At4g35610
--------->
ARR11(3)
--------->
ARR14(2)
--------->
At4g35610
<---------
ARR14(2)
<---------
ARR14(2)
<------
NtERF2
<---------
ARR11(3)
--------->
YAB1
------>
NtERF2
--------->
ARR14(2)
<---------
YAB1
<---------
SPL7
<---------
AGP1
--------->
ATHB51
<---------
ATERF1(1)
<-
--------->
LBD16
<--------
ATHB1
<---------
ICU4
--------->
RAP2.6(2)
<-
<---------
LBD16
----------->
GT1
<---------
CCA1(2)
<<<<<<<<<
GT-1
--------->
LBD16
---
-----
TEIL
<---------
CCA1(2)
<-----------
GT1
<-----------
GT1
------>
NtERF2
-------
----
MYB46(3)
<---------
GLK1(1)
<---------
AHL20(2)
--------->
YAB1
<---------
LBD16
<-------
-
ANAC58
<---------
MYB46(3)
--------->
AHL20(2)
--------->
TOE2(3)
------>
ZmHOX2a(1)
<-------
-
ANAC46
--------->
ALFIN1
<---------
ATHB51
--------->
ANAC58
--------->
ATERF1(1)
---------
-
ANAC58
<---------
MYB52(1)
--------->
ICU4
--------->
ANAC58
<---------
ATERF1(1)
--------->
DOF5.7(2)
ttcatactccggtggatctcacggcgtaataatttatcatatctgaatcgcaatcttattaacc
atggctcctccggccgcttcacagcgttatccgtca
3672000
--------->
TOE1(3)
-------->
P
------>
MYB46(1)
<--
------>
MYB83
<---
<---------
ALFIN1
----
----------
HVH21
<----
--------
SPL7
<---------
At4g35610
------>
DEAR3(1)
--------->
ZAT2
---->
HVH21
--------------->
AGL15
-------
----
TGA1
<---------
YAB1
<------
ZmHOX2a(2)
<---------------
AGL15
<------
ZmHOX2a(2)
----
HVH21
--------->
At5g28300
===============
HOX2a_HOX2a
<---------
DAG2
<---------
ZAT2
>
ANAC46
--------->
LBD16
------>
ZmHOX2a(1)
<-----------
GT1
--------->
At4g35610
ccgtcccaaccttcagg
gtaacttatgcttctatccatcctctctcgatcaatagcactgaattcaccttacattttttagataattagctgggatcaat
3672100
<---------
ZAT2
------>
ZmHOX2a(2)
--------->
At4g35610
===================
HOX2a_HOX2a
<------
ZmHOX2a(2)
<---------
At4g35610
--------->
ARR11(3)
--------->
LBD16
--------->
ATHB12
<---------
MYB52(1)
<---------
ARR11(3)
--------->
HSFB2a(2)
<---------
YAB1
--------->
ALFIN1
<---------
YAB1
<---------
HSFB2a(2)
--------
DOF2
<---------
ANAC58
<---------
AHL20(2)
--------->
ANAC58
------
ICU4
<---------
ANAC46
<---------
HSFB2a(2)
--------->
ANAC58
----->
YAB1
--------->
YAB1
<---------
ANAC58
--------->
HSFC1(1)
--------->
ANAC46
<---
-----
ATHB12
<----------
DOF2
<-----------
HVH21
--------->
AHL20(2)
------>
ZmHOX2a(1)
<----
-->
WOX13(1)
<---------
CCA1(2)
--------->
PCF5
--------->
HSFB2a(2)
<---------
YAB1
--------->
GLK1(1)
--
ctttatgattcgatcatctcttttcatgcgtggtccgtcagctcattacttctcgaattttatgatctgtattattcctatacgaaatccagaaattcag
3672200
------>
ZmHOX2a(2)
--------->
ARR11(3)
<-----------
ARR10
--------->
AGP1
<---------
ARR11(3)
<---------
ARR14(2)
<---------
AGP1
<---------
CCA1(2)
<---------
At4g35610
--------->
ZAT2
--------->
ANAC58
------
GLK1(2)
--------->
ARR14(2)
<---------
ZAT2
--------->
DAG2
--------->
ANAC58
-----
At4g35610
<------
ZmHOX2a(2)
<-----------
HVH21
---------->
DOF2
--------->
At4g35610
------->
At4g35610
<---------
ZAT6
<-----------
GT1
--------->
MYB59
--------->
YAB1
aagctctcatttagcagatctagttttagtgcctagttttaccagtccgagctaagttatgtcaaaaagctaatgtggaatcagaagaagccatttagtt
3672300
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AGI:
At5g11480.1
Description:
GTP binding. similar to EMB2001 (EMBRYO DEFECTIVE 2001), GTP binding [Arabidopsis thaliana] (TAIR:AT2G22870.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44074.1); contains InterPro domain GTP-binding; (InterPro:IPR005289); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917)
Range:
from: 3669194
to: 3671575
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g11490.1
Description:
adaptin family protein. similar to beta-adaptin, putative [Arabidopsis thaliana] (TAIR:AT4G23460.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61515.1); similar to beta adaptin-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61154.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44073.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain; (InterPro:IPR009028); contains InterPro domain Adaptor protein complex, beta subunit (InterPro:IPR016342); contains InterPro domain Armadillo-like helical; (Int
Range:
from: 3671819
to: 3676310
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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