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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                --------->ARR14(2)
                <---------ARR14(2)                                                      --------->GLK1(2)
                --------->GLK1(2)                                                      <---------GLK1(2)
               <---------GLK1(2)                                                       <---------ARR11(3)
     <-------GAMYB                   <---------AtLEC2                                  --------->ARR11(3)
    <---------MYB46(3)<---------ANAC58                --------->ETT(1)             ---------->DOF2
    ----------->GT1   <---------ANAC58  ----------->GT1                       --------->DAG2
---->DOF2 --------->TOE2(3)     <-----------GT1       <---------ANAC46       ---------->DOF2    ----
 
agaaatgtggttacattagaatctggctcgcgttgttactgcatggaaaaatcgatgtcggaaaatacagaaaacagggcaaaagtaaaagattcttgac  3654000
                                                                 --------->WRKY12
                                                                 --------->WRKY38(1)
                                                               <-------GAMYB  ------->GAMYB
                                                              --------->MYB52(2)    --------->ANAC46
                                                          <---------YAB1     --------->MYB46(3)
                                                          --------->ICU4   <---------DOF5.7(2)
                                                         <---------TOE2(3)<---------WRKY12
                                                        --------->YAB1    <---------WRKY38(1)
      <---------ATHB12                                 --------->ICU4   <-----------HVH21
      --------->ICU4                               ----------->GT1<---------WRKY18(1)   ---------->DOF2
------>DOF2           --------->ZAT18        ---------->DOF2  <---------MYB46(3)<------ZmHOX2a(2) >>
 
aaagaagaaatgatgcgaagaagagtggattatatgcaaaacaaaatgaaaagaaggaataatgtttgttgaccttgtcaacgatcgacgtaaaaggaga  3654100
                                                                     --------->AHL20(1)
                                                                     <---------AHL20(1)
                                                            ------>ZmHOX2a(2)
                                      ------>MYB46(1)      <------ZmHOX2a(2)
                                      ------>MYB83<---------ANAC46   <---------AHL20(2)
    --------->ANAC58                <---------MYB59       <---------ARR11(3)
    --------->ANAC58          <---------At4g35610 <---------ANAC58   --------->AHL20(2)
  --------->MYB52(1)          --------->At4g35610 <---------ANAC58  --------->AHL20(2)       <------
>>>>>>>TBF1    <------ZmHOX2a(1)    <---------MYB46(2)    --------->ARR11(3)            <---------MYB59
 
agaagaaacgaaacattaggagagaagaaaatgagcttaccaaacaaaaactagcgttgaagatcgctcgaataaattgtagagacagagacctaaatga  3654200
                                                                                 <---------YAB1
                                                                            <---------ICU4
                                                                           <---------ATHB12
                                                                          ------>MYB46(1)
                                <--------HAHB4                          --------->MYB46(3)         -
                                --------->ATHB51                        <---------MYB46(2)         <
                                -------->ATHB1                          --------->AtMYB61         --
                                --------->YAB1                          <---------MYB111(1)       <-
                                <---------ICU4                         --------->ANAC58      <------
     <-----------RAV1(1)       --------->ICU4     <---------ZAT6       --------->ANAC58    ---------
    <---------TOE2(3)  --------->ICU4         <--------P    <---------AtLEC2--------->YAB1<-------TEIL
  *TSS                <-----------TBP <---------ANAC46  <---------MYB52(1)------>MYB83 <---------ANAC58
---ATHB12            ------->TEIL <---------YAB1--------->MYB52(2) <------ZmHOX2a(1)   <---------ANAC58
 
tgcgattaatgtggcaaacccatgtatttatggaattattatcgtataggttagtgtccgtttacatgaaggacaccaaacatcacgatggggttcgttt  3654300
    --------->LBD16                        <---------WOX13(1)
    ----------->GT1                       <------------CBF                         ----------->GT1
  <---------LBD16          <---------ARR14(2)     <---------AHL20(2)           ------->GAMYB
-------->GLK1(1)           --------->ARR14(2)     --------->AHL20(2)          --------->MYB46(3)
---------GLK1(1)        --------->LBD16  --------->ATHB12                     <---------MYB55(2)
------->ARR14(2)      <---------LBD16 <---------ANAC55(2)                --------->YAB1          ---
--------ARR14(2) <----------DOF2      --------->ANAC46  ----------->GT1<---------WOX13(1)  ---------
---MYB52(1)      --------->TOE2(3)   <-------TEIL--------->AHL20(2)   <------------CBF    ----------
>MYB52(2)<---------YAB1<---------LBD16--------->ANAC55(2)        <-----------GT1--------->MYB52(1)
 
ggatacccggttatatttatctttaaccgggatactaatatacgtgattgaaattaattcggtttaataaaccgattgataaccaccggtttaaaaagta  3654400
                                                             --------->ANAC55(1)
                                                             --------->ANAC46
                                                             --------->bZIP60(2)
                                       ---------->DOF2       --------->ANAC58
                                    --------->ANAC58         --------->ANAC58
                           *TSS     --------->ANAC58      --------->ZAT14
   --------->TOE1(2)      --------->MYB52(1)           --------->LBD16
------>YAB1            --------->At4g35610            --------->HSFB2a(2)
>DAG2                  <---------At4g35610            <---------HSFB2a(2)
>DOF2  <------ZmHOX2a(1)  ---------->DOF2         --------->At4g35610                   ------>ZmHOX2a(1)
 
tcaaaacgaaggagtgaatggatgagagctaaagggaagaagcaaagtgaagaagctccagaacacgccatagctatggctcttctctgtccttctcttc  3654500
                                                         >>>>>>>>>>>>>>>>>LFY <---------ARR11(3)
                    ----------->GT1              <---------ZAT18              --------->ARR11(3)
                   <---------TOE2(3)             --------->ZAT18        <---------HSFB2a(2)
                   <---------TOE1(3)        <---------ANAC46            --------->HSFB2a(2)
                  <-----------RAV1(2)       <---------ANAC58      <----------DOF2
              <----------DOF2  <----------DOF2  <---------ANAC46  <---------DAG2
     <---------GLK1(2)      --------->ARR11(3)  <---------ANAC58 <---------ANAC58
     --------->ARR14(2)     <---------ARR11(3)  <---------ANAC58 <---------ANAC58            <------
     <---------ARR14(2)    --------->YAB1   <---------ANAC58     <---------ANAC46           <-------
 
cctctccgaattctcgtcttttcaggttaattatcttttgtgatgtttcttgtgtgctcgagccagtggctttttctgtaagatgtttttgtgatttcgg  3654600
                                                                       <---------ANAC58
                                                                       <---------ANAC58
                    --------->At4g35610                             <---------WOX13(1)
                  <------ZmHOX2a(1)                               --------->ATHB12
               <-----------RAV1(2)        <---------YAB1          <---------ICU4              <-----
              <-------TEIL              --------->YAB1           <---------YAB1          --------->ANAC46
             --------->ALFIN1         --------->ANAC58           --------->ICU4  <---------ANAC58
           --------->At4g35610        --------->ANAC58      --------->At4g35610  <---------ANAC46
---ANAC46  <---------At4g35610  <---------ANAC58            <---------At4g35610  <---------ANAC58  <
--LBD16  <-----------RAV1(2)    <---------ANAC58      ---------->DOF2  <-----------------AGL2<------
 
atgagattgtgttcaggtgcaggagcagcaatatttcgagcaagtatcatggagcctcaaaggagctgatgattgctcgttctggtgtgtctacgagatc  3654700
                <----------DOF2
          --------->DAG2                                                                           <
         --------->DAG2               --------->ATHB12                                             <
        ---------->DOF2 <---------TOE1(2)                           <---------ANAC58           <----
   <---------LBD16  --------->HSFB2a(2)                             <---------ANAC58   --------->ANAC46
-ZmHOX2a(2)    <---------ANAC58      <---------YAB1       --------->WRKY38(1)         --------->LBD16
---------ARR11(3)   <---------HSFB2a(2)                  <---------MYB52(1)          <-----------RAV1(2)
---ARR11(3)    <---------ANAC58    <---------ZAT18      <-------GAMYB  >>>>>>>>>>>>>>>>>LFY --------
 
aatttcttcggaaaaggggctttctcgtagggatttagtgctcattggtctctcttctccgttgtctatgttcttgccattgtcttctccaggtaatgct  3654800
                     <---------AHL20(1)
                     --------->ARR11(3)                                      <---------MYB46(3)
                     --------->AHL20(1)                                  --------->ATHB12
                     <---------ARR11(3)                               <----------DOF2
                    --------->CCA1(1)                         --------->ARR11(3)
---------ANAC58     --------->RVE1(1)                         <-----------ARR10
---------ANAC58 --------->AHL20(2)                            --------->GLK1(2)                 ----
------DOF2    <----------DOF2     --------->WOX13(1)          <---------ARR11(3) --------->MYB52(2)
->ICU4      ---------->ID1      <-------TEIL                 --------->RVE1(1) <--------P ----------
 
ttgcttctattgttcgtcttttaatatcttgtagattcaattagatagtttcacttctacttaaaaatcttgcctttcattggttagtagagagaaagga  3654900
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AGI:  At5g11440.1   
Description:  CID5/IPD1 (INCREASED POLYPLOIDY LEVEL IN DARKNESS 1); protein binding. similar to CID6 (CTC-Interacting Domain 6), protein binding [Arabidopsis thaliana] (TAIR:AT5G25540.1); contains InterPro domain Ubiquitin system component Cue (InterPro:IPR003892)
Range:  from: 3652715    to: 3654203    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At5g11450.1   
Description:  oxygen-evolving complex-related. Identical to PsbP-related thylakoid lumenal protein 4, chloroplast precursor [Arabidopsis Thaliana] (GB:P82715;GB:Q8VY65); similar to unnamed protein product [Vitis vinifera] (GB:CAO44122.1); contains InterPro domain Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); contains InterPro domain Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683)
Range:  from: 3654428    to: 3656556    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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