Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------LBD16                                            <---------HSFB2a(2)                                            <-----------RAV1(1)                                           <---------LBD16                                          ----------->RAV1(2)                                       <------ZmHOX2a(2)                                      <---------ARR14(3)                                      --------->ARR11(3)                                      <-----------ARR10                                      <---------ARR14(2)                                      <---------ARR11(3)                                      --------->ARR14(2)                                      <---------AGP1                                      --------->ARR14(3)                             --------->AHL20(2)                   ------->TEIL                 ------                             <---------AHL20(2)<---------ANAC46   --------->GLK1(2)            <----- --------->DAG2           --------->AHL20(2)--------->HSFB2a(2)   <---------ARR14(2)           ------ --------->DOF2           --------->YAB1------>ZmHOX2a(2)    ----------->GT1        --------->YAB1 ----->ANAC46   --------->AHL20(2)    --------->AGP1     --------->DAG2             ----------->GT1 -DOF2          <---------AHL20(2)   <---------CCA1(2)  ---------->DOF2         --------->ATHB12   cgaaaagtttcaaactttttaaatacaataaaaaattgcagatcttctgggggagactaaaagttgtgaatctagatgtgaatcaatggtgatacaaaat  3594600                                                                            --------->AHL20(2)                                                                   --------->CCA1(2)                                                --------->ARR11(3)--------->ARR11(3)                 <---------GLK1(1)              <---------ARR11(3)<---------ARR14(2)          <-----------GT1                    --------->YAB1       <---------ARR11(3) --->GLK1(2)     --------->GLK1(1)        --------->WOX13(1)      --------->ARR11(1) ----ARR11(3)   <---------ARR11(3) --------->YAB1               ----------->ARR10 --->ARR11(3)   --------->ARR11(3)----------->GT1<------ZmHOX2a(2)--------->ARR14(2)              <--   ctagatgtgaatttactagatatccaatgcatgagaatgaaaatcaatgagatcactcgttgggagaagatatgaaaataaaacaatcgacaatttttgt  3594700                                                               <---------ANAC58                                                               <---------ANAC58                                                             <---------ARR11(3)                                                             --------->ARR11(3)       <---------TOE1(2)                        <---------At4g35610              ---------->DOF2             <---------ANAC58                        --------->At4g35610           ----------->GT1                <---------ANAC46             ========================================================================================           ------>ZmHOX2a(2)                     <---------WOX13(1)                  <---------ANAC58         <---------ARR11(3)                      <----------DOF2            --------->ARR11(3)         --------->ARR11(3) --------->ARR11(3)  <---------ANAC58        ---------->DOF2      ------>ZmHOX2a(1)     <----------DOF2--------->ALFIN1            <---------ANAC58     --------->At4g35610     ======== ---------GT1----------------->AGL3             <---------ANAC46     <---------At4g35610     ========   ttaccttctttgatctccaaatgtggagcagagcttgatgacctctcgctgcttgatggtaaagagcttgcagctaaagagctagtcgcttgttcctgca  3594800                      <-----------RAV1(2)                     <------ZmHOX2a(2)                 <------ZmHOX2a(2)                <---------ARR11(3)                --------->ARR11(3)                                           <------ZmHOX2a(1)         <----------DOF2                                                    <----------ID1       <---------------AGL15                                               ------------------------>ANAC81       --------------->AGL15                                        ----------->GT1    <-----------GT1 <-----------HVH21            ---------->ID1  <---------ZAT2         ---------->DOF2 ======================MADS_MADS            <---------ARR11(3)   --------->ZAT2 ---------->DOF2 =======================HOX2a_HOX2a         --------->ARR11(3)   <---------At4g35610  <------ZmHOX2a(1) ===========================HOX2a_HOX2a   ----------->ARR10     --------->GLK1(2)    <----------ID1   tttttcttactctttgaagatcgatcaggcgagagagagagggaaagatttgttgtcttagtagcgaagctggtgaaaaggataaagaggaaaagagcgg  3594900                                                                                     ------>ZmHOX2a(2)                                                                                    <---------GLK1(1)                                                                                    --------->GLK1(1)                                                                                    <------ZmHOX2a(2)                                                                                   <---------AGP1                                                                                   --------->ARR14(2)                                                                                   <---------ARR11(3)                                                                                   --------->ARR11(3)                                                                                   <---------ARR14(2)                                                                                   --------->AGP1                                                                                  <---------CCA1(2)                                                                                  --------->At4g35610                                                                               <---------MYB52(1)                                                                               <------NtERF2                                                                              <-----------HVH21                                                                              <---------RAP2.6(3)                                                                              ------>NtERF2                                                                             --------->RAP2.3(2)                                                                             --------->RAP2.3(3)                                                                             --------->TGA1a                                                                             <---------ATERF1(2)                                                                             --------->DEAR3(1)                                                                             --------->ATERF1(2)                                                                            --------->ERF1                                                                            --------->RRTF1(1)                                                                            --------->RAP2.3(1)                                                                           ------>NtERF2                                                                          --------->DEAR3(1)                                                                          ------->GAMYB                            --------->GLK1(2)                             =============MYC_MYB                <---------ARR11(3)                                       --------->MYB46(3)                --------->ARR11(3)   <---------ANAC58                    --------->DEAR3(2)          --------->HSFB2a(2)        <---------ANAC58                   -------->P<---------At4g35610          <---------HSFB2a(2)  <---------YAB1       --------->ANAC58    <---------ATERF1(1)  *TSS ---      --------->GLK1(1)    <---------GLK1(2)        --------->ANAC58    ===============MYC_MYB-------   gacttgggatttacagaagaacttggaaagaatctaattgcgagacattttgggaaggaatagattactctggctaccgccgtcagatctctgaagaatc  3595000                                                                     <------------CBF                                                                   <---------YAB1                                                                   <---------TOE2(3)                <                                                               <------------CBF                     -                                                            ------------>CBF   <---------MYB46(3)  --                                                           --------->ANAC58    <---------DEAR3(1)  <-                                                        ==============================bZIP_DOF     --                                                      ------>ZmHOX2a(2)       --------->ALFIN1     <-                                                     <------ZmHOX2a(2)       --------->TOE1(2)     --    --------->GLK1(1)                               <---------ARR14(2)       <-------MYC2          <-    <---------GLK1(1)                               --------->ARR14(2)       <-------MYC3        ----   <---------ARR14(2)                    ====================HOX2a_HOX2a     ------->MYC3      <-----   --------->ARR14(2)      --------->DAG2===================HOX2a_HOX2a      ------->MYC2     <------ ------>MYB52(1)         ---------->DOF2 <------ZmHOX2a(1) --------->ANAC58 ========================= -->GLK1(2)       <---------ANAC46     <---------TOE2(3)---------->DOF2     <---------TGA1a   <------   gaacggatatcgagagtgaatcgtggagaaaggtgagccttgaggaaatacaaggatccaaaggcaattgagattggaacgtgggtggattttagccgtt  3595100                                                      <---------ALFIN1                                                     <------NtERF2                                                   <---------TCP20                                                   <---------TCP15(1)                                                   --------->PCF2                                                  --------->PCF5                                                  <---------PCF2                                                  --------->TCP16(1)                                                  --------->TCP15(1)     <--------P                                   --------->TCP11(2) ------>ZmHOX2a(2)                                --------->TCP20 ------ZmHOX2a(2)                                ----------->TCP11(1) -------->CCA1(2)                                <---------TCP23 ------->AGP1                                    <---------ATERF1(1) --------ARR14(2)                                <---------TCP16(2) ------->ARR11(3)                                <---------TCP15(2)                         <-------- --------ARR11(3)                               <---------MYB46(3)                          ========= ------->ARR14(2) --------->At5g28300        <---------ANAC58                    <------MYB83 --------AGP1    ----------->GT1             <---------ANAC46                    <------MYB46(1) ------->ARR10 <---------At5g28300           <---------ANAC58                   <---------AtMYB61 ----MYB52(1) --------->MYB52(1)     <---------At4g35610                  =========================== -----HVH21--------->At4g35610       --------->At4g35610    ------>ZmHOX2a(1)   --------->MYB59 =============MYC_MYB   --------->MYB52(1)  <---------MYB46(3)            ---------->DOF2--------->ARR11(3) ---RAP2.6(3)<---------SPL7  <---------ARR14(2)--------->ALFIN1  ------>ZmHOX2a(1)       <---------ARR11(3)   agatctggttagcatcttacggtgaataatggataggggagctaattgggtgggccccattcctgtccttggacagaaaagtttggtctgagttctttca  3595200               ------>NtERF2              --------->ANAC46              --------->ANAC58              --------->ANAC58            <---------ATERF1(1)            <---------ALFIN1     <---------bZIP60(2)     ========================================bZIP_DOF <---------AHL20(2)     <---------TGA1a              ---------->DOF2     --------->AHL20(2)     <---------O2            <----------DOF2         <---------AHL20(2)     --------->O2 <---------STY1(1)                  --------->AHL20(1)     --------->TGA1a  <---------------------WRI1     <---------AHL20(1)     ===================================================bZIP_DOF                                 <---     ===================================bZIP_DOF     --------->AHL20(2)                        ------  ----------->HVH21   --------->ZAT18    <---------ANAC58 <---------AHL20(2)                   <----- <-----------HVH21--------->STY1(1)      <---------ANAC46 <---------AHL20(1)               <---------YAB1 --DOF2  --------->PCF2     <---------ANAC58   ----------->GT1                            <---------AHL20(2) ==============bZIP_DOF     <---------ANAC58 ---------->DOF2 <---------YAB1               --------->AHL20(2) ==============bZIP_DOF<---------DEAR3(1)<---------ANAC58 --------->AHL20(2)        --------->AtLEC2<   ttctgtcacatggcccacgcctagggcagtgctttcaaaagtgtcgtgaaagtaatttattttatttttggtgatttgtttttgtcatgcattaaaatta  3595300          <------NtERF2         <---------RAP2.6(3)         ------>NtERF2        --------->RAP2.6(2)        --------->DEAR3(1)        >>>>>>>>>AtERF-5        >>>>>>>>>AtERF-4        --------->RAP2.3(2)        >>>>>>>>>AtERF-3        >>>>>>>>>AtERF-2        --------->RAP2.3(3)                                                                   ------>ZmHOX2a(1)        --------->ANAC46                                                                     --------        >>>>>>>>>AtERF-1                                                                  --------->ARR11(3)       --------->RAP2.3(1)                                <---------ZAT2                  <---------ARR11(3)       --------->ERF1                                     --------->ZAT2                 --------->RVE1(1)   ---------->DOF2                           --------->ANAC58                            <---------GLK1(1) --------GT1           ---------->DOF2       --------->ANAC46                            --------->GLK1(1) --->AHL20(2)       ------>MYB83             --------->ANAC58 ----------->GT1           <---------ARR11(3) ----AHL20(2) ---------->DOF2            <---------HSFB2a(2) --------->ANAC58           --------->ARR11(3) ----------DOF2     ------>MYB46(1)      --------->HSFB2a(2) --------->ANAC58           --------->ARR14(2)   aactttatagccgccataaaccaaacaaagttgaaacggttttctacaagacacaatctcagcaaggaaataactaaaaactgaatacaagatatcctaa  3595400                           --------->ATHB12                        --------->ANAC58                        <---------ALFIN1                        --------->bZIP60(2)                        --------->ANAC46                        --------->ANAC58                      ----------->RAV1(1)                      <---------ALFIN1                      --------->RAP2.6(2)                   --------->ANAC46                           <---------CCA1(2)                   --------->ANAC58                  --------->ZAT6                   --------->ANAC58                <-----------GT1               <---------ARR14(2)     --------->GLK1(2)     --------->TOE1(1)               --------->ARR14(2)     <---------ARR14(2)    --------->TOE2(1)                 -------              --------->GLK1(1)       --------->ARR14(2)   ------>ZmHOX2a(1)        ----------->HVH21 ->TOE2(3)----------->RAV1(1)        <---------GLK1(2) --------->ANAC46            ------>ZmHOX2a(1)   aatttcatagtccaacatatccagccacaccattggacagaatctactactataaacactcctcgtatcaccaaaaaaacttgtccttgacgacaatgtt  3595500  Previous    Next  AGI:  At5g11260.1    Description:  HY5 (ELONGATED HYPOCOTYL 5); DNA binding / transcription factor. Identical to Transcription factor HY5 (HY5) [Arabidopsis Thaliana] (GB:O24646); similar to HYH (HY5-HOMOLOG), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G17609.2); similar to DBtag [eukaryotic synthetic construct] (GB:BAF96503.1); contains InterPro domain cAMP response element binding (CREB) protein; (InterPro:IPR001630); contains InterPro domain bZIP transcription factor, bZIP-1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) Range:  from: 3593381    to: 3594993    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g11270.1    Description:  OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3). similar to unnamed protein product [Vitis vinifera] (GB:CAO44203.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81198.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Homeobox; (InterPro:IPR001356) Range:  from: 3595286    to: 3597099    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version