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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
LBD16
<---------
HSFB2a(2)
<-----------
RAV1(1)
<---------
LBD16
----------->
RAV1(2)
<------
ZmHOX2a(2)
<---------
ARR14(3)
--------->
ARR11(3)
<-----------
ARR10
<---------
ARR14(2)
<---------
ARR11(3)
--------->
ARR14(2)
<---------
AGP1
--------->
ARR14(3)
--------->
AHL20(2)
------->
TEIL
------
<---------
AHL20(2)
<---------
ANAC46
--------->
GLK1(2)
<-----
--------->
DAG2
--------->
AHL20(2)
--------->
HSFB2a(2)
<---------
ARR14(2)
------
--------->
DOF2
--------->
YAB1
------>
ZmHOX2a(2)
----------->
GT1
--------->
YAB1
----->
ANAC46
--------->
AHL20(2)
--------->
AGP1
--------->
DAG2
----------->
GT1
-
DOF2
<---------
AHL20(2)
<---------
CCA1(2)
---------->
DOF2
--------->
ATHB12
cgaaaagtttcaaactttttaaatacaataaaaaattgcagatcttctgggggagactaaaagttgtgaatctagatgtgaatcaatggtgatacaaaat
3594600
--------->
AHL20(2)
--------->
CCA1(2)
--------->
ARR11(3)
--------->
ARR11(3)
<---------
GLK1(1)
<---------
ARR11(3)
<---------
ARR14(2)
<-----------
GT1
--------->
YAB1
<---------
ARR11(3)
--->
GLK1(2)
--------->
GLK1(1)
--------->
WOX13(1)
--------->
ARR11(1)
----
ARR11(3)
<---------
ARR11(3)
--------->
YAB1
----------->
ARR10
--->
ARR11(3)
--------->
ARR11(3)
----------->
GT1
<------
ZmHOX2a(2)
--------->
ARR14(2)
<--
ctagatgtgaatttactagatatccaatgcatgagaatgaaaatcaatgagatcactcgttgggagaagatatgaaaataaaacaatcgacaatttttgt
3594700
<---------
ANAC58
<---------
ANAC58
<---------
ARR11(3)
--------->
ARR11(3)
<---------
TOE1(2)
<---------
At4g35610
---------->
DOF2
<---------
ANAC58
--------->
At4g35610
----------->
GT1
<---------
ANAC46
========================================================================================
------>
ZmHOX2a(2)
<---------
WOX13(1)
<---------
ANAC58
<---------
ARR11(3)
<----------
DOF2
--------->
ARR11(3)
--------->
ARR11(3)
--------->
ARR11(3)
<---------
ANAC58
---------->
DOF2
------>
ZmHOX2a(1)
<----------
DOF2
--------->
ALFIN1
<---------
ANAC58
--------->
At4g35610
========
---------
GT1
----------------->
AGL3
<---------
ANAC46
<---------
At4g35610
========
ttac
cttctttgatctccaaatgtggagcagagcttgatgacctctcgctgcttgatggtaaagagcttgcagctaaagagctagtcgcttgttcctgca
3594800
<-----------
RAV1(2)
<------
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR11(3)
--------->
ARR11(3)
<------
ZmHOX2a(1)
<----------
DOF2
<----------
ID1
<---------------
AGL15
------------------------>
ANAC81
--------------->
AGL15
----------->
GT1
<-----------
GT1
<-----------
HVH21
---------->
ID1
<---------
ZAT2
---------->
DOF2
======================
MADS_MADS
<---------
ARR11(3)
--------->
ZAT2
---------->
DOF2
=======================
HOX2a_HOX2a
--------->
ARR11(3)
<---------
At4g35610
<------
ZmHOX2a(1)
===========================
HOX2a_HOX2a
----------->
ARR10
--------->
GLK1(2)
<----------
ID1
t
ttttcttactctttgaagatcgatcaggcgagagagagagggaaagatttgttgtcttagtagcgaagctggtgaaaaggataaagaggaaaagagcgg
3594900
------>
ZmHOX2a(2)
<---------
GLK1(1)
--------->
GLK1(1)
<------
ZmHOX2a(2)
<---------
AGP1
--------->
ARR14(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR14(2)
--------->
AGP1
<---------
CCA1(2)
--------->
At4g35610
<---------
MYB52(1)
<------
NtERF2
<-----------
HVH21
<---------
RAP2.6(3)
------>
NtERF2
--------->
RAP2.3(2)
--------->
RAP2.3(3)
--------->
TGA1a
<---------
ATERF1(2)
--------->
DEAR3(1)
--------->
ATERF1(2)
--------->
ERF1
--------->
RRTF1(1)
--------->
RAP2.3(1)
------>
NtERF2
--------->
DEAR3(1)
------->
GAMYB
--------->
GLK1(2)
=============
MYC_MYB
<---------
ARR11(3)
--------->
MYB46(3)
--------->
ARR11(3)
<---------
ANAC58
--------->
DEAR3(2)
--------->
HSFB2a(2)
<---------
ANAC58
-------->
P
<---------
At4g35610
<---------
HSFB2a(2)
<---------
YAB1
--------->
ANAC58
<---------
ATERF1(1)
*
TSS
---
--------->
GLK1(1)
<---------
GLK1(2)
--------->
ANAC58
===============
MYC_MYB
-------
gacttgggatttacagaagaacttggaaagaatctaattgcgagacattttgggaaggaatagattactctggctaccgccgtcagatctctg
aagaatc
3595000
<------------
CBF
<---------
YAB1
<---------
TOE2(3)
<
<------------
CBF
-
------------>
CBF
<---------
MYB46(3)
--
--------->
ANAC58
<---------
DEAR3(1)
<-
==============================
bZIP_DOF
--
------>
ZmHOX2a(2)
--------->
ALFIN1
<-
<------
ZmHOX2a(2)
--------->
TOE1(2)
--
--------->
GLK1(1)
<---------
ARR14(2)
<-------
MYC2
<-
<---------
GLK1(1)
--------->
ARR14(2)
<-------
MYC3
----
<---------
ARR14(2)
====================
HOX2a_HOX2a
------->
MYC3
<-----
--------->
ARR14(2)
--------->
DAG2
===================
HOX2a_HOX2a
------->
MYC2
<------
------>
MYB52(1)
---------->
DOF2
<------
ZmHOX2a(1)
--------->
ANAC58
=========================
-->
GLK1(2)
<---------
ANAC46
<---------
TOE2(3)
---------->
DOF2
<---------
TGA1a
<------
gaacggatatcgagagtgaatcgtggagaaaggtgagccttgaggaaatacaaggatccaaaggcaattgagattggaacgtgggtggattttagccgtt
3595100
<---------
ALFIN1
<------
NtERF2
<---------
TCP20
<---------
TCP15(1)
--------->
PCF2
--------->
PCF5
<---------
PCF2
--------->
TCP16(1)
--------->
TCP15(1)
<--------
P
--------->
TCP11(2)
------>
ZmHOX2a(2)
--------->
TCP20
------
ZmHOX2a(2)
----------->
TCP11(1)
-------->
CCA1(2)
<---------
TCP23
------->
AGP1
<---------
ATERF1(1)
--------
ARR14(2)
<---------
TCP16(2)
------->
ARR11(3)
<---------
TCP15(2)
<--------
--------
ARR11(3)
<---------
MYB46(3)
=========
------->
ARR14(2)
--------->
At5g28300
<---------
ANAC58
<------
MYB83
--------
AGP1
----------->
GT1
<---------
ANAC46
<------
MYB46(1)
------->
ARR10
<---------
At5g28300
<---------
ANAC58
<---------
AtMYB61
----
MYB52(1)
--------->
MYB52(1)
<---------
At4g35610
===========================
-----
HVH21
--------->
At4g35610
--------->
At4g35610
------>
ZmHOX2a(1)
--------->
MYB59
=============
MYC_MYB
--------->
MYB52(1)
<---------
MYB46(3)
---------->
DOF2
--------->
ARR11(3)
---
RAP2.6(3)
<---------
SPL7
<---------
ARR14(2)
--------->
ALFIN1
------>
ZmHOX2a(1)
<---------
ARR11(3)
agatctggttagcatcttacggtgaataatggataggggagctaattgggtgggccccattcctgtccttggacagaaaagtttggtctgagttctttca
3595200
------>
NtERF2
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
<---------
ATERF1(1)
<---------
ALFIN1
<---------
bZIP60(2)
========================================
bZIP_DOF
<---------
AHL20(2)
<---------
TGA1a
---------->
DOF2
--------->
AHL20(2)
<---------
O2
<----------
DOF2
<---------
AHL20(2)
--------->
O2
<---------
STY1(1)
--------->
AHL20(1)
--------->
TGA1a
<---------------------
WRI1
<---------
AHL20(1)
===================================================
bZIP_DOF
<---
===================================
bZIP_DOF
--------->
AHL20(2)
------
----------->
HVH21
--------->
ZAT18
<---------
ANAC58
<---------
AHL20(2)
<-----
<-----------
HVH21
--------->
STY1(1)
<---------
ANAC46
<---------
AHL20(1)
<---------
YAB1
--
DOF2
--------->
PCF2
<---------
ANAC58
----------->
GT1
<---------
AHL20(2)
==============
bZIP_DOF
<---------
ANAC58
---------->
DOF2
<---------
YAB1
--------->
AHL20(2)
==============
bZIP_DOF
<---------
DEAR3(1)
<---------
ANAC58
--------->
AHL20(2)
--------->
AtLEC2
<
ttctgtcacatggcccacgcctagggcagtgctttcaaaagtgtcgtgaaagtaatttattttatttttggtgatttgtttttgt
catgcattaaaatta
3595300
<------
NtERF2
<---------
RAP2.6(3)
------>
NtERF2
--------->
RAP2.6(2)
--------->
DEAR3(1)
>>>>>>>>>
AtERF-5
>>>>>>>>>
AtERF-4
--------->
RAP2.3(2)
>>>>>>>>>
AtERF-3
>>>>>>>>>
AtERF-2
--------->
RAP2.3(3)
------>
ZmHOX2a(1)
--------->
ANAC46
--------
>>>>>>>>>
AtERF-1
--------->
ARR11(3)
--------->
RAP2.3(1)
<---------
ZAT2
<---------
ARR11(3)
--------->
ERF1
--------->
ZAT2
--------->
RVE1(1)
---------->
DOF2
--------->
ANAC58
<---------
GLK1(1)
--------
GT1
---------->
DOF2
--------->
ANAC46
--------->
GLK1(1)
--->
AHL20(2)
------>
MYB83
--------->
ANAC58
----------->
GT1
<---------
ARR11(3)
----
AHL20(2)
---------->
DOF2
<---------
HSFB2a(2)
--------->
ANAC58
--------->
ARR11(3)
----------
DOF2
------>
MYB46(1)
--------->
HSFB2a(2)
--------->
ANAC58
--------->
ARR14(2)
aactttatagccgccataaaccaaacaaagttgaaacggttttctacaagacacaatctcagcaaggaaataactaaaaactgaatacaagatatcctaa
3595400
--------->
ATHB12
--------->
ANAC58
<---------
ALFIN1
--------->
bZIP60(2)
--------->
ANAC46
--------->
ANAC58
----------->
RAV1(1)
<---------
ALFIN1
--------->
RAP2.6(2)
--------->
ANAC46
<---------
CCA1(2)
--------->
ANAC58
--------->
ZAT6
--------->
ANAC58
<-----------
GT1
<---------
ARR14(2)
--------->
GLK1(2)
--------->
TOE1(1)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
TOE2(1)
-------
--------->
GLK1(1)
--------->
ARR14(2)
------>
ZmHOX2a(1)
----------->
HVH21
->
TOE2(3)
----------->
RAV1(1)
<---------
GLK1(2)
--------->
ANAC46
------>
ZmHOX2a(1)
aatttcatagtccaacatatccagccacaccattggacagaatctactactataaacactcctcgtatcaccaaaaaaacttgtccttgacgacaatgtt
3595500
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AGI:
At5g11260.1
Description:
HY5 (ELONGATED HYPOCOTYL 5); DNA binding / transcription factor. Identical to Transcription factor HY5 (HY5) [Arabidopsis Thaliana] (GB:O24646); similar to HYH (HY5-HOMOLOG), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G17609.2); similar to DBtag [eukaryotic synthetic construct] (GB:BAF96503.1); contains InterPro domain cAMP response element binding (CREB) protein; (InterPro:IPR001630); contains InterPro domain bZIP transcription factor, bZIP-1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827)
Range:
from: 3593381
to: 3594993
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g11270.1
Description:
OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3). similar to unnamed protein product [Vitis vinifera] (GB:CAO44203.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81198.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Homeobox; (InterPro:IPR001356)
Range:
from: 3595286
to: 3597099
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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