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UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                           ------->GAMYB
                         <---------TOE2(3)
                      --------->DOF5.7(2)
                     <----------DOF2
                   <------NtERF2
                  ------>NtERF2                 ------>ZmHOX2a(2)
                 --------->RAP2.3(3)           <------ZmHOX2a(2)
                 --------->RAP2.3(2)          <-----------ARR10
                 --------->DEAR3(1)           <---------ARR14(2)
                 --------->RAP2.6(2)          <---------ARR14(3)
                --------->ORA47(2)            <---------AGP1
                --------->DEAR4(2)            --------->ARR14(2)
                --------->ATERF1(1)           <---------ARR11(3)
              <---------DEAR3(1)              --------->ARR14(3)
--------ARR11(3)--------->RAP2.3(1)           --------->ARR11(3)
--------GLK1(2)<---------ATERF1(1) ----------->HVH21                                              <-
------->ARR11(3)--------->ERF1     ----------->TGA1                                   <-----------RAV1(1)
--DOF2  ---------->DOF2 <---------DOF5.7(2) ----------->ARR10           <----------DOF2       ------
 
agattttgcagaaaagctcgccgcctttaacgaactccatgacgaagaagatcttggtcttcgtagccatgacttctttcaattcaactatgttgggatg  3446700
                                                                                                   -
                                                                                                   -
                                                                                                   -
                                                                                             <------
                                                                                            <-------
                                                                                           ---------
                  --------->ARR11(3)                                                       ---------
                 <---------GLK1(1)                                 ------>ZmHOX2a(2) <---------WOX13(1)
           <---------ICU4                                    <---------ANAC58       <---------ANAC58
          <---------YAB1<---------ANAC58                     --------->ANAC55(2)    <---------ANAC58
          --------->ICU4<---------ANAC58                     <---------ANAC58     <---------YAB1  <-
       <-------TEIL     <---------ANAC46 <---------ICU4      <---------ANAC55(2)<----------DOF2  ---
--------SPL7 <---------WOX13(1)         <---------ATHB12<---------ICU4          --------------------
----->HVH21--------->ATHB12  --------->ATHB12  --------->LBD16   <---------ARR11(3)--------->ATHB12-
 
acgaacgagcttcatgattgaaatctcgcgtttgatttgttccatcattccaggtctcttcattacttgatccttgttgatgactttgattgcgacgcac  3446800
   --------->DEAR3(1)
  <------NtERF2
 --------->LBD16
 ------>NtERF2
 <---------ATERF1(1)
 --------->ABI4(1)
--------->RAP2.3(3)
--------->RAP2.3(2)
--------->ATERF1(2)
<---------ATERF1(2)
--------->DEAR3(1)
<---------DEAR3(1)
-------->DEAR4(2)
-------->ATERF1(1)
-------->ERF1      --------->At5g28300
---ALFIN1          --------->LBD16   <---------HSFB2a(1)
--ZAT18            <---------RAP2.6(3)          <---------MYB59
>ANAC58   ------>ZmHOX2a(2)          --------->HSFB2a(1)
>ANAC58 <---------ARR11(3)           --------->HSFC1(2)           --------->TOE2(1)        <--------
--------ATERF1(1)---------->ID1     <---------TOE1(2)             --------->TOE1(1)        ---------
------>ANAC46<----------DOF2        <---------TOE1(3)<-----------GT1 <---------TOE1(2)     <--------
->WRI1  --------->ARR11(3)  <----------DOF2<----------DOF2------>MYB83 <----------DOF2--------->ANAC46
-------->RAP2.3(1)--------->ANAC55(2)<---------HSFC1(2)   ------>MYB46(1) --------->HSFB2a(2)     --
 
tcgccgccgatgatctctttgccgtaatagactttggcgaaggttcctttgcctaataaccttcccatctcgtactttccgaacagaactcgccgttctt  3446900
                  ------>MYB46(1)
                  ------>MYB83                                            --------->ALFIN1
        <---------ICU4                                                 --------->DAG2
-ARR14(2)       --------->DREB2C(2)                                  ---------->DOF2
>ARR14(2)       --------->DEAR3(1)                                <---------TOE2(3)            -----
-MYB52(1)  <-----------GT1    --------->AHL20(2)             <------ZmHOX2a(1)  <---------REM1(1)
---->ZmHOX2a(1)--------->DEAR3(2)          >>>>>>>>>TBF1  <------ZmHOX2a(1)  <---------ANAC46 <-----
 
cctccatttgatatttacaccgactagggaaaatgaaatagtggaagaagaagatgaagaaggaggattaagaaaaggtggtgttgaagcatgaagtttg  3447000
                              <---------YAB1
                     <---------ARR11(3)
                     --------->AHL20(1)
                     --------->ARR11(3)
                   <---------ARR14(2)                                                        >>>>>>>
                   --------->ARR14(2)                                                 <------ZmHOX2a(1)
                   <---------ARR11(3)                                               <---------TOE2(3)
                  <------ZmHOX2a(1)                                               --------->ICU4>>>>
---->ATHB12      ----------->GT1                                                --------->CCA1(2)
----YAB1   <-------TEIL  <-----------GT1                                 <------ZmHOX2a(1)>>>>>>>>>TBF1
 
attagtattttgagtacatgaggatatattactctcataggtgaagaagtagagcaattccatggaatatgggagaggaagagaaatgaggaagaagaag  3447100
                                   <---------ZAT18
                               --------->ALFIN1
                             <---------ANAC46
                             <---------ANAC58
                             --------->O2
                             <---------ANAC58
                             <---------O2
                         --------->ZAT2
                         <---------At4g35610
                         --------->At4g35610
                        ------->TEIL
               --------->YAB1--------->ANAC55(2)       --------->ZAT14
              *TSS   --------->ANAC58                --------->ZAT14                 --------->ANAC58
   --------->ZAT18   --------->ANAC46              --------->ANAC46 <---------AHL20(2)            <-
  --------->ALFIN1   --------->ANAC58        --------->AHL20(2)    <-----------TBP   --------->ANAC58
>>TBF1       ------->TEIL<---------ZAT2------>ZmHOX2a(1)--------->ZAT6               --------->ANAC46
>>>>>TBF1 <---------ATHB12  <-------TEIL    <---------YAB1   <----------DOF2  ----------->GT1  -----
 
aagaagtgtgcaaatgaatcacaaacgcagctacgtggtgtcctcttattatatactgaacactctttgaatttatagacaaggtgataagccactcaca  3447200
               <---------ZAT14
        ----------->HVH21
       <-----------HVH21
      --------->ANAC46
      --------->bZIP60(2)   <---------DAG2
     <-------MYC3        <-----------GT1
     ------->MYC3      <----------DOF2                                          xxxxxxxxxxxxxxxxxxxx
  <---------ALFIN1  <---------ARR11(3)                                         xxxxxxxxxxxxxxxxxxxxx
----------HVH21--------->ZAT14    <----------DOF2                              xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
----->DOF2 <---------ALFIN1 <----------DOF2            ----------->GT1  <-----------GT1      -------
 
aagtcacacatgtcacactgcaataactttactttttctttggaatttgttttttatatggaaaataagttttttttacaaaaaaaaaaaaaaaaaaaaa  3447300
                                                 <---------ARR11(3)
                                                 <---------GLK1(2)
                                                 --------->ARR11(3)
                                       <---------ANAC46
                                 <---------AHL20(2)
        --------->AHL20(2)       --------->AHL20(1)
    <---------ICU4               --------->AHL20(2)
   <---------YAB1               <---------AHL20(2)
   --------->ICU4        ----------->GT1--------------->AtSPL8
>smallRNA(le3)      <---------ANAC58--------->ICU4                        <---------------AtSPL8
>smallRNA(si3)      <---------ANAC58<---------ATHB51                    <---------ZAT6          <---
-->AHL20(2)   --------->ARR11(3)--------->AHL20(2)                <---------YAB1  ---------->DOF2
 
atggtcatcatttaaaacatattgtttgcagttaaaaaaattatgggtactagattttgtttttgttttgttatagtgttgtacataaagaattttgtat  3447400
                           <---------ANAC58
                 --------->ANAC55(1)                                                           -----
                 --------->ANAC46                                                        -----------
                 --------->ANAC58                                                       --------->TOE2(3)
                 --------->ANAC58        <---------YAB1                                 --------->YAB1
               --------->ANAC46       <---------AHL20(2)                             <----------DOF2
             <---------ALFIN1      <---------GLK1(2)                              <-----------GT1
        <-----------GT1    <---------ANAC58         ----------->RAV1(1)           ---------->ID1
--------GT1 <---------REM1(2)      <---------ARR11(3)     --------->YAB1         <-----------GT1
 
aaccttctatatttctacacacggcatattgtttgctagattttattcttaagaacaacattcagaacaatgtctcttgtgttttttcctttcttaattt  3447500
                                                                                                  --
                                          <----------DOF2                                        ---
                              <---------ICU4                                              ----------
                              <---------AHL20(2)                                          <---------DAG2
    <---------ANAC58          --------->ATHB51                                            --------->TOE2(3)
    <---------ANAC58          --------->AHL20(2)                                          --------->TOE1(3)
    <---------ANAC46          <--------HAHB4                                           <-----------GT1
  <---------AHL20(2)          -------->ATHB1                              <-----------GT1 <---------
------>GT1                   <---------ATHB51             ------->TEIL   <---------AHL20(2)     <---
---->AGL15                   --------->ICU4      <-----------HVH21       --------->AHL20(2)    -----
 
gttaattacttggacaaaactagatgctaacaattatttctaagactttgggggtcatatgtatgttttttttttttttaatattctctattaccttata  3447600
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AGI:  At5g10930.1   
Description:  CIPK5 (CBL-INTERACTING PROTEIN KINASE 5); kinase. similar to CIPK25 (CBL-INTERACTING PROTEIN KINASE 25), kinase [Arabidopsis thaliana] (TAIR:AT5G25110.1); similar to CBL-interacting protein kinase [Gossypium hirsutum] (GB:ABP35583.1); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)
Range:  from: 3445367    to: 3447115    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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