Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <---------HSFC1(1)                                                                              <---------HSFB2a(2)                                                                              --------->HSFB2a(2)                                                                              --------->HSFC1(1)                                                                         <---------ZAT2                                                                         <---------HSFB2a(1)                                                                         <---------HSFC1(2)                                                                         --------->ZAT2                     <---------ALFIN1                                    --------->HSFC1(2)                   ------>NtERF2                                        --------->ANAC58                   --------->LBD16                                      --------->ANAC58                  --------->ANAC46                                  --------->ANAC58                  --------->ANAC58               <---------ATHB12   --------->ANAC58                  --------->ANAC58      ---------->DOF2             --------->ANAC46               --------->ARR14(2) --------->TOE1(2)              <---------ZAT14 ------ATERF1(1)<---------ATERF1(1)   --------->LBD16            <---------ZAT18               <----- -----ZAT18    <---------ARR14(2)<---------HSFB2a(1)             <---------WRKY38(1)         -------- ---->ZAT18<-----------RAV1(2)   --------->HSFB2a(1)             --------->ZAT14         <-------TEIL   gactccaattccaccaggttccgccatctcatggaacatccgaagagccaaatcaatatttccacagtgaacgcaagcttcgagaactgagttcatcaca  3377100                                                                       <---------ANAC58                                                                       <---------ANAC46                                                                       <---------TGA1a                                                                       --------->TGA1a                                                                       <---------ANAC58                                                                       <------NtERF2                                                                      ------>NtERF2                                                                   <---------RAP2.3(1)                                                                   <---------DEAR4(2)                                                                   ------>NtERF2                                                                   <---------ATERF1(1)                                                                 --------->ATERF1(1)                                                               --------->ETT(2)                                                               <---------TGA1a                                                               ----------->HVH21                                                               <---------ETT(2)                                                             --------->MYB52(1)                                                            ----------->HVH21                                                          <---------ZAT2                                                          --------->At4g35610                                                          <---------At4g35610                                                          --------->ZAT2                                                         ------>MYB83<---------ANAC46                                                         ------>MYB46(1)                                                   ----------->HVH21<------NtERF2                                                  ------>ZmHOX2a(2)<---------RRTF1(1)                                                  ==================================HOX2a_HOX2a                                                 <------ZmHOX2a(2)<---------RRTF1(3)                                          ===============HOX2a_HOX2a--------->ATERF1(1)                               <---------ANAC46  ===================================HOX2a_HOX2a                     <-----------ARR10    ------>ZmHOX2a(1) ----------->TGA1 <------ZmHOX2a(1)                    <---------MYB52(1)    ==============HOX2a_HOX2a<---------ERF1           <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------ARR11(3)<---------RAP2.3(2) ----YAB1--------->DEAR3(1) <---------RAP2.6(2) <---------ARR14(2)<---------DEAR3(1) ->YAB1 --------->ATERF1(1)<---------At4g35610  --------->ARR14(2)<---------RAP2.3(3)   attgtgttgagcctcccataccgtttcttagcggcttctacctcctccacgatctgaccaagctgacgacggcgcgtgaggagaacaatgcgagaagtga  3377200                                                          --------->ETT(1)                                                        <-----------HVH21                                                     <---------ANAC46                                                     --------->TGA1a                                                     <---------ANAC58                                                     <---------O2                                                     ======================bZIP_DOF                                                     --------->O2                                                     <---------TGA1a                ----------->RAV1(2)                  <---------ANAC58          --------->ATHB12                          <---------MYB52(1)    --------->MYB52(1)    -----        <---------WOX13(1)     ----------->ARR10   <-----------HVH21     --------->ANAC58     ------- <---------ANAC58          <------ZmHOX2a(1)      --------->DEAR3(1)     --------->ANAC58    <------ZmHOX2a(1) <---------ANAC58 --------->HSFB2a(2)     <------ZmHOX2a(1)     ---------->DOF2    <XXXXXXXXXXXXXXXXX   gaggcttgagattgattcgcctggaataaggagtagctctgcgaggataacaccgtcgtgtcggaacaaaggagcacgacggaagaagagggagaggagt  3377300                                                          ------>NtERF2                                                          --------->LBD16                                                         --------->ANAC58                                                         --------->RAP2.6(2)                                                         --------->ANAC58                                                         ------->GAMYB                                                         --------->ANAC46                                                        --------->SPL7                                                        --------->MYB46(3)                                                    --------->MYB46(3)                                                  -------->P                                               <---------HSFC1(2)                                               --------->HSFC1(2)                              <-----                          <-------TEIL         --------->At4g35610                        <---------ANAC58 ------>HVH21     --------->GLK1(1)           --------->ANAC58                            <---------ANAC58 ---->GT1         <---------GLK1(1)           <-----------ARR10                 <---------ALFIN1 XXXMIR847   --------->At4g35610              --------->ANAC58  --------->ATHB12--------->REM1(1)   gacaagagtagaaatagctgaaatccgattcatcttcaaggagaccagaagctacccatccgccattgatgggcttcaagcttcaccttgaggcttgagc  3377400                                                      ----------->GT1                        <---------ARR14(2)          *TSS<---------ARR11(3)                        --------->ARR14(2)         --------->WRKY18(1)           --------->MYB46(3)                        --------->GLK1(2)        --------->WOX13(1)       <------NtERF2            <---------TOE2(3)                  <---------ATHB12          --------->MYB55(2)            <---------TOE1(3)                --------->WOX13(1)         <---------ANAC58           <---------DOF5.7(2)              --------->MYB46(3)          <---------ANAC58         ----           --------->MYB52(1)            --------->REM1(1)              <---------ANAC46        <---- --------->YAB1        <---------GLK1(2) --------->MYB46(3)            <---------LBD16          ----- ----At4g35610--------->TOE1(2)        ----------->RAV1(1) <---------YAB1<---------MYB46(3)    ------   taatcgaaatagataacgttggagagaatctgaaatcacagcaacaacaatcagtcaagttattcttcaccttggcgggtcgaacaaatgttacacagtg  3377500                                                                  ========================bZIP_DOF                                                                  <---------ANAC58                                                                  --------->ANAC55(2)                                                                  <---------O2                                                                  --------->TGA1a                                                                  <---------TGA1a                                                                  --------->bZIP60(1)                                                                  <---------ANAC46                                                                  <---------bZIP60(1)                                                                  <---------ANAC58                                                                  --------->O2                                                               ----------->TGA1                                                               --------->WRKY12<---------DAG2                                              <---------ARR11(3) ----------->STF1       <-----------------AGL1                 <---------AHL20(1)<---------DOF5.7(2)<---------ANAC58      <-----------GT1               ---------->DOF2           --------->DOF5.7(2)  <---------ANAC58 ----->ALFIN1                       ========================================bZIP_DOF -----ZAT14                      --------->TOE2(3)           --------->TOE2(3) <----------DOF2 ---->ZAT14               ==================================================bZIP_DOF                < --->ALFIN1               <----------DOF2------------>CBF  <---------TOE2(3)<-----------GT1        <-   tggagatttaacaaatttgggccttgagctttgaacattaaagcccaatatacttatattcaacgttgacgtgagttttgacttttcgttcccctaatcc  3377600                                                                  <---------ARR14(2)                                                                *TSS        --------->HSFB2a(2)                                     --------->LBD16        <---------HSFB2a(2)                                    --------->ANAC58        --------------->AGL15--------->LBD16                   --------->ANAC58       ------>ZmHOX2a(1)    <---------ANAC46        <---------HSFB2a(2)               <---------LBD16        --------->TOE2(3)    <---------ANAC58        --------->HSFB2a(2)      <----------DOF2              <---------ARR11(3)    <---------ANAC58 <---------ARR11(3)              <---------DAG2               --------->ARR11(3) ------------CBF     --------->ARR11(3)     <---------ALFIN1 <---------ANAC46    --------->CCA1(1) --------ICU4       <---------CCA1(2)  <-----------GT1    ----------->HVH21      --------->RVE1(1)   aaaattgcttctagattaagctatatctctccagaactaattttcgacactgcaacttttttgacgcggaaacaaaatatgaaatatcctaaattccatg  3377700                        --------->YAB1                       <---------YAB1                      <---------ARR11(3)                      --------->ARR11(3)                                             <---------YAB1                 <---------YAB1                    --------->LBD16            <---------MYB52(1)                 --------->AHL20(2)              <---------LBD16         <---------ARR14(2)  <-------              ------>ZmHOX2a(1)          <----------DOF2            --------->MYB52(1)       <-------             --------->TOE2(3)     --------->REM1(1) <---------ARR14(2)  --------->ARR14(2)  --------   gagtctcaatctcatccttataaatatcatcaaaactacaaccctttttaacgcggaaacaaaaaactaagaacggttccatttgttttcattgtctaga  3377800                                                                         ------>ZmHOX2a(1)                                                                       ----------->RAV1(2)                                                                     <---------ARR14(2)                                                                     --------->ARR14(2)                                                                    <---------ZAT2                                                                    --------->At4g35610                                                                    <---------At4g35610                                                                    --------->ZAT2                                                                   ------->TEIL                                                                --------->ANAC58                                                                --------->ANAC58                                                                --------->ANAC46          <---------ZAT14                                                               <-------TEIL               <---------LBD16                                                              --------->CCA1(2)      <---------SPL1(2)                            <---------ANAC58                 <---------SPL7          <---------SPL7                            <---------ANAC58                 --------->ARR14(2)      <---------ZAT14                      <---------ANAC58                       <---------ARR14(2)  <---------ARR14(2)                      <------MYB46(1)                       <------MYB83 --------->HSFB2a(2)                      <---------ANAC46                      <------MYB46(1)   <---------ANAC58                      <------MYB83                          --------->HSFB2a(1)  ------------------>SPL14                      <---------ANAC58                      <---------HSFC1(2)<---------ANAC46  <----       >>>>>>>>>TBF1 --------->MYB111(1)                    --------->HSFC1(2)<---------ANAC58-------    >>>>>>>>>TBF1    <---------AtMYB61                 =========================HOX2a_HOX2a<---------ANAC46 --HSFC1(1)          --------->MYB46(2)  <------ZmHOX2a(1)  <---------HSFB2a(1)  --------->ARR14(2) < --HSFB2a(2)         <---------MYB46(3)  =====================HOX2a_HOX2a<---------HSFB2a(2)--------- ->HSFB2a(2) <------ZmHOX2a(1)        <---------ICU4   ------>ZmHOX2a(2)<---------LBD16--------->SPL7   agagaagaagaagaaggatgtgtttggtgttcgtgtgtgatcaggacgagagggtgatcggaaggtacgcagctcctggagcgtgtccgtactgcggagg  3377900                       <<<<<<<<<<<<<<<<<LFY               --------->ANAC55(2)    <---------At4g35610               <---------ANAC46   --------->GLK1(2)                                            ------               <---------ANAC55(2)--------->ARR14(2)                                        <------NtERF2               ----------->GT1    <---------ARR14(2)                                --------------->AGL15            --------->WRKY12     --------->ARR14(2)                    <-----------HVH21   --------->LBD16         <---------MYB46(3)      <---------ARR14(2)       <---------AHL20(2)        <---------ALFIN1 --ZmHOX2a(1) <---------TOE2(3)  <---------GLK1(2)        <---------ICU4           ----------------->AGL1 -->ALFIN1 <---------WOX13(1)  ----------->ARR10         <---------ATHB12          <-----------------AGL1 ---------MYB46(3)     >>>>>>>>>>>>>>>>>LFY            --------->YAB1  <-----------TGA1   <---------ANAC46 >LBD16 --------->ALFIN1    --------->ALFIN1    ------>ZmHOX2a(1)    <-----------STF1    <---------LBD16   agcggttcaagtggttgacgtaaatagccagtggagattctgcttcgttcctctctctaataaatccaaacgtcgtcatctctgttccacttgcggcaaa  3378000  Previous    Next  AGI:  At5g10690.1    Description:  pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12775.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43926.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81324.1); contains InterPro domain Cystathionine beta-synthase, core (InterPro:IPR000644); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 3374394    to: 3377452    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g10695.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G57123.1); similar to unknown [Picea sitchensis] (GB:ABK22689.1) Range:  from: 3377664    to: 3378222    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version