Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->At4g35610                            <---------ZAT14                       ------->GAMYB                                     --------->ZAT14           ------>ZmHOX2a(1)        ---------->DOF2                    --------------->AtSPL8      <-       --------->ARR14(2) <---------At4g35610                       --------->RVE1(1)              <-       <---------ARR14(2) --------->ZAT2                           --------->GLK1(2)     ----------->RAV1(1)      --------->At4g35610 <---------ZAT2                           --------->ARR11(3)   --------->MYB46(3)      <---------At4g35610------->TEIL                              <---------ARR11(3)  ------>MYB83<-      --------->ZAT2  --------->ANAC58        <------ZmHOX2a(1)--------->YAB1          ------>MYB46(1)      <---------ZAT2  --------->ANAC46      <---------------AtSPL8--------->RVE1(1)   ----------->RAV1(1) ------>GLK1(2)       --------->ANAC58  ---------->DOF2       --------->AHL20(2)    --------->MYB46(3)   aatctagcagctcctctatgtccaacgcagctctgaacaaaagaaagaggaacacaattagtcattaaaaatctctgtactccaaaaccaacaacagggt  3105900                                                                                                  ---                                                                                                 ----                                                                                                -----                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              -------                                                                                     --------->ANAC58                             --------->ANAC58                                        --------->ANAC46    <---------ANAC46         --------->ANAC58                                        --------->ANAC58 <---------MYB52(1)<---------ANAC46       --------->At4g35610                 --------->LBD16 ------- --------ANAC58    <---------ANAC58       <---------At4g35610                <---------ANAC46 <------ --------ANAC46    <---------ANAC58      --------->ANAC58                   <---------LBD16 --------- --------ANAC58   <---------TOE2(3)      --------->ANAC58             --------->AHL20(2) --------->MYB52(1)   ttcgtttagtggagaagacttacgtttagaaacgacatgagggaagctaaatcaaatccaaaaccaaaaaaaaaaaatcgcgcgaacacacaaacagatc  3106000                                                                                                    -                                                                                                    <                                                                                                    <        <---------MYB52(1)                                                                      <----   <---------ZAT18                                                                              ----- --------->At4g35610                                                                            ----- <---------At4g35610                --------->ATHB51                                            <---- --->ZmHOX2a(1)                     <---------ICU4                                              ----- ----->TOE2(3)                      <--------HAHB4                                              <---- ->ZmHOX2a(2)                      --------->ICU4                                           <-------- -ZmHOX2a(2)                       <---------YAB1                                           --------- -->ARR14(2)                     --------->YAB1                 <---------AHL20(2)          --------- ---ARR11(3)                    ===================================================================== ---ARR14(2)             <---------DEAR3(1)                     --------->AHL20(2)       --------->ARR14(2) -->ARR11(3)             <---------ETT(2)                  <---------GLK1(2)             <---------ARR14(2) -->AGP1--------->DOF5.7(2)     ----------------->AGL3   --------->LBD16              ------------>CBF ---GLK1(2)              --------->ETT(2)               <---------HSFB2a(2)         --------->At4g35610 -->ARR10                --------->DEAR3(1)             --------->HSFB2a(2)       <---------ZAT18<---   ctcagtggacgttaactggcctaaacgtcgacgtttcataattagtttgtgagacttcccagaattttaaatgggcttatttagtgagcccaatacggac  3106100         <------ZmHOX2a(2)        <---------ARR11(3) --------->YAB1 <--------ATHB1 <---------ICU4 -------->ICU4                                                                        ----------->GT1 ---------ATHB51                                                          --------->ANAC58 ---------ATHB12                                                          --------->ANAC46 -------------AGL2                                                        <---------ANAC55(2) ------------>AGL2                                                        --------->ANAC55(1) ------------>AGL1        --------->AHL20(1)                              --------->ANAC58 -------------AGL3        <---------AHL20(1)                             <---------LBD16 ------------>AGL3        --------->AHL20(2)                            <---------ALFIN1 -------------AGL1      <---------YAB1                                 <---------REM1(2) -ANAC55(2)      --------->YAB1 <---------YAB1                         -------->P     <------ZmHOX2a(1) >ANAC55(2)     <-------TEIL  <-----------GT1              --------->AHL20(2)        ----------->GT1 >ANAC46--------->ARR11(3)<---------AHL20(2)               <---------AHL20(2)     ---------->DOF2---- ============MADS_MADS --------->AHL20(2)                 --------->AHL20(2) ---------->DOF2 -------- ------------AGL15  --------->YAB1  --------->YAB1  <---------CCA1(2) ----------->RAV1(1)   ---------   caataatggagatcaacattcataatattatattactattatgccctcgacatcatatcatttatttctggccaacacggaaaggaaaggataaaaaagt  3106200                                           --------->LBD16                                          --------->ANAC55(2)                                          --------->ANAC46                                          <---------ANAC55(2)                                      <----------DOF2                    <---------YAB1   --------->HSFB2a(1)                  --------->ATHB12   <---------HSFB2a(1)                  <---------ICU4 --------->TOE1(1)                 <---------YAB1  --------->TOE2(1)                 <---------------AGL15                 --------->ICU4 ------>ZmHOX2a(1)                  --------------->AGL15              <---------YAB1    <---------LBD16               <------------CBF      --------->AHL20(2) ------->GT1--------->YAB1     --------------------->WRI1   <---------YAB1----------->GT1 <---------AHL20(2) ->DAG2 --------->ICU4    --------->HSFC1(2)          <---------MYB52(1)---------->DOF2  --------->YAB1 ->DOF2<----------DOF2    <---------HSFC1(2)   --------->ICU4--------->ATHB12  --------->AHL20(2)  --   cgtaaatggcattatcgtgattattagacacttcctcggactttccgtaattatctggtagtatcattgctccataaagaaaaaaatgaaataaaaatga  3106300              <---------ANAC58              <---------ANAC46              ----------->GT1           <---------WOX13(1)                     <-----------GT1          <------------CBF                   <---------ICU4         --------->ATHB12                    --------->AHL20(2)        <---------YAB1                       <---------AHL20(2)                 --------->AHL20(2)      <---------At4g35610                    <--------ATHB1                    <---------AHL20(2)    <---------WOX13(1)                      <---------ATHB51                   --------->AHL20(2)   <------------CBF       <---------At4g35610--------->ATHB51           <----------DOF2  --------->ATHB12   *TSS <---------ZAT2    --------->ICU4          ---------->ID1 <---------YAB1   <---------YAB1          --------->YAB1           <-----------GT1     ---------->ID1 ------->YAB1 <---------ANAC58         ----------->GT1      <----------DOF2--------->AHL20(2)   atagtgattgctgattgggtataattcgagctgtttttttgctgtaataatttcacaattctctttttttttcgcttttaaataattttgtctctccatc  3106400                          --------->ZAT2                   --------->YAB1---------->DOF2          <---------ANAC58--------->At4g35610                ---------->DOF2                     ----          <---------ANAC58<---------At4g35610             --------->ZAT6                        <----     <----------DOF2 <---------CCA1(2)             --------->AHL20(2)               <-----------RAV1(1)   ttcttctcttttgctagtctctcatatcagctaagaaaagaaattcagaacaaaaaaataacacaaagctctgtgtttctgtctatctgttgaatcaaat  3106500                                                               --------->DAG2                                                              ---------->DOF2                                                          --------->LBD16  <------ZmHOX2a(1)                           --------->MYB46(3)            <---------------AGL15                         <-----------GT1           --------->MYB52(2)      ==========================                    ----------->GT1 --------->AHL20(2)   --------------->AGL15  <----------DOF2 ----->YAB1<------ZmHOX2a(2)------->GAMYB        <---------MYB52(1)        ========================== -----ATHB12   ---------->DOF2      <---------AHL20(2)<-----------GT1 <----------DOF2   catatggaagacgatcgaaaagaggtataaccatctgttttattatctcttgttagtttccccataaagtttctttaggaaactttgattttactaagaa  3106600           --------->ATHB12         <----------DOF2        <---------ANAC58        <---------ANAC58     ------>ZmHOX2a(2)    <------ZmHOX2a(2)    --------->CCA1(2)   <---------ARR14(2)   --------->AGP1   <---------ARR14(3)   --------->ARR14(3)   --------->ARR11(3)                                                                        <-------   --------->ARR14(2)                                                                        <-------   <---------ARR11(3)                                            --------->ANAC58            <-------  <---------GLK1(1)                                    <---------ATHB12        ----------->GT1   <--- ----------->ARR10       --------->HSFC1(1)       <---------At4g35610    <---------ZAT6      -------- ==========HOX2a_HOX2a   --------->HSFB2a(2)     <---------ZAT6  --------->ANAC46            -------- ===========HOX2a_HOX2a  <---------HSFB2a(2)<---------ANAC46     --------->ANAC58            <-------   atcgagatctgcttgtttggattttttcgagaattgaacattggttttgtagagctaatcaagctccaagcactactgatactgtttatattgaagattt  3106700 --------->AHL20(2) --GLK1(2)--------->At4g35610 --ARR14(2) --ARR11(3) ------YAB1                            --------->AHL20(1)                      <-----------GT1 ->ARR14(3)                            <---------AHL20(2)                 <----------DOF2 ->ARR11(3)                            --------->AHL20(2)                 ------>ZmHOX2a(1) --------- --ARR14(3)   <---------------AGL15   --------->AHL20(2)            <-------TEIL            <--------   tgattaaaaatcagcactaatcttggtaatcggaaacaaaaaaaattgagttagtagtatattctaaagtttcatcctttttcacatctcgataagctga  3106800  Previous    Next  AGI:  At5g09950.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G33170.1); similar to hypothetical protein OsI_002601 [Oryza sativa (indica cultivar-group)] (GB:EAY74754.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73858.1); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAB89038.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 3102878    to: 3105865    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g09960.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64850.1); similar to 4D11_4 [Brassica rapa subsp. pekinensis] (GB:AAZ67518.1) Range:  from: 3106321    to: 3107830    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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