Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <-------TEIL    --------->ARR14(2) --------ARR14(2) ------->ARR14(2)                                    --------->ANAC46                           ----- ---->RAV1(1)           --------->CCA1(2)          <---------ALFIN1                            ------ -----HVH21      <---------ZAT14                  --------->MYB46(3)                 ------->TEIL --- --->HVH21       --------->ZAT14             ------->GAMYB                   --------->ANAC58 <------ >DEAR3(2)   <---------HSFB2a(2)           --------->At4g35610               --------->ANAC46 ------- >MYB46(3)   --------->HSFB2a(2)          --------->MYB52(1)                 --------->ANAC58<-------   agacccgatacatttccagtacattgatatgagcacattagaaacaactgcatccactgcataagaaagtttgaacatcaggccatgaatttgtctcccg  3105500                             --------->ANAC58        ==========================RAV        ----------->RAV1(1)  --------->ANAC58   --------->GLK1(2)    ------>ZmHOX2a(1)                                             <---------ARR11(3)  <---------GLK1(2)   --------->At4g35610                                             <---------ARR14(2) ---->LBD16           ----------->RAV1(2)                                             <---------ARR11(1) --->LBD16 ------->GAMYB----------->HVH21                                             --------->ARR14(2) ------->DOF2     ------>MYB46(1)                             ----------->GT1         --------->ARR11(3) ---HSFB2a(2)     ------>MYB83                  ---------->DOF2                      <---------CCA1(2) -->HSFB2a(2)   <---------MYB59         --------->ZAT6    --------->ATHB12      <-----------GT1 --LBD16--------->MYB52(1)<<<<<<<GRF7  --------->ZAT18   --------->ICU4      <----------DOF2      ---   aaaagaatcccaacagaacctatctcctgacaagcccgaagaacactaacaaaagcgtattgattagaaaaaatcccttctttaaccatatctctcaaaa  3105600                                                 --------->ANAC58                                 <--                                     --------->LBD16                                           <-----                                     ------>ZmHOX2a(1)                                         <-----                                   ----------->RAV1(2)                                         <-----                                 --------->ARR11(3)                                            ------                                 <---------ARR11(3)    --------->ANAC58                        <-----                                 <---------ARR14(2)    --------->ANAC46                        <-----           ------>ZmHOX2a(1)     --------->ARR14(2)    --------->ANAC58           --------->TOE2(3)  ---------->DOF2               <---------CCA1(2)--------->ANAC58    ------>ZmHOX2a(1)     <---------DAG2 ------>ZAT6              <---------YAB1         --------->ANAC46   --------->TOE1(2)   <---------ALFIN1   acactaaagcttccttatgttctccattacgactatatcctgaaacaatacacgcccaagaaacacagttcctaagaggcatttcgtcaaacaccttacg  3105700                                         --------->MYB55(2)                                         <---------MYB46(3)                                         --------->MYB111(2)  <---------ARR14(2)                    <--------P -----TEIL--------->MYB46(3)         <---------TOE2(3) ----ANAC46                      --------->YAB1 ----ANAC58                     --------->ICU4 ----ANAC55(1)             --------->ANAC58                      <---------MYB59 --->ANAC55(2)           --------->CCA1(2)                  <----------DOF2                       --- ----ANAC55(2)          <---------ARR11(3)<-------GAMYB  --------->ARR11(3)          <---------LBD16 ----ANAC58<-----------GT1 --------->ANAC58              <---------ARR11(3)      <---------AHL20(2)   tgcagaaaccgaatcacccgtttcaagataagcattgatgaggttgttgcacaagtagacatctttatctaacctattcttatataatcgggaatggaag  3105800                          --------->ZAT2                                 --------->ZAT14                       ------->GAMYB                                     <---------ZAT14           ------>ZmHOX2a(1)        ---------->DOF2                    --------------->AtSPL8      <-       --------->ARR14(2) --------->At4g35610                       --------->RVE1(1)              <-       <---------ARR14(2) <---------At4g35610                      --------->ARR11(3)    ----------->RAV1(1)      <---------At4g35610 <---------ZAT2                           --------->GLK1(2)    --------->MYB46(3)      <---------ZAT2  --------->ANAC58                             <---------ARR11(3)  ------>MYB46(1)      --------->At4g35610------->TEIL         <------ZmHOX2a(1)--------->YAB1          ------>MYB83<-      --------->ZAT2  --------->ANAC46      <---------------AtSPL8--------->RVE1(1)   ----------->RAV1(1) ------>GLK1(2)       --------->ANAC58  ---------->DOF2       --------->AHL20(2)    --------->MYB46(3)   aatctagcagctcctctatgtccaacgcagctctgaacaaaagaaagaggaacacaattagtcattaaaaatctctgtactccaaaaccaacaacagggt  3105900                                                                                                  ---                                                                                                 ----                                                                                                -----                                                                                               <-----                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                     --------->ANAC58                             --------->ANAC58                                        --------->ANAC46    <---------ANAC46         --------->ANAC58                                        --------->ANAC58 <---------MYB52(1)<---------ANAC58       <---------At4g35610                 --------->LBD16 <------ --------ANAC46    <---------ANAC58       --------->At4g35610                <---------ANAC46 <------ --------ANAC58    <---------ANAC46      --------->ANAC58                   <---------LBD16 --------- --------ANAC58   <---------TOE2(3)      --------->ANAC58             --------->AHL20(2) --------->MYB52(1)   ttcgtttagtggagaagacttacgtttagaaacgacatgagggaagctaaatcaaatccaaaaccaaaaaaaaaaaatcgcgcgaacacacaaacagatc  3106000                                                                                                    <                                                                                                    -                                                                                                    <        <---------MYB52(1)                                                                      <----   <---------ZAT18                                                                              ----- --------->At4g35610                                                                            ----- <---------At4g35610                <---------ICU4                                              <---- --->ZmHOX2a(1)                     <--------HAHB4                                              <---- ----->TOE2(3)                      --------->ATHB51                                            ----- ->ZmHOX2a(2)                      --------->ICU4                                           --------- -ZmHOX2a(2)                       <---------YAB1                                           <-------- -->AGP1--------->DOF5.7(2)      --------->YAB1                 <---------AHL20(2)          --------- -->ARR11(3)                    ----------------->AGL3          --------->AHL20(2)       <---------ARR14(2) ---ARR14(2)                    ===================================================================== -->ARR14(2)             <---------DEAR3(1)                <---------GLK1(2)             --------->ARR14(2) ---ARR11(3)             --------->DEAR3(1)              --------->LBD16              ------------>CBF ---GLK1(2)              --------->ETT(2)               --------->HSFB2a(2)         --------->At4g35610 -->ARR10                <---------ETT(2)               <---------HSFB2a(2)       <---------ZAT18<---   ctcagtggacgttaactggcctaaacgtcgacgtttcataattagtttgtgagacttcccagaattttaaatgggcttatttagtgagcccaatacggac  3106100         <------ZmHOX2a(2)        --------->ARR11(3) --------->YAB1 <--------ATHB1 <---------ICU4 ---------ATHB51                                                                      <------ZmHOX2a(1) -------->ICU4                                                            --------->ANAC46 ---------ATHB12                                                          --------->ANAC58 -------------AGL3                                                        --------->ANAC58 ------------>AGL3                                                        <---------ANAC55(2) ------------>AGL2        --------->AHL20(2)                              --------->ANAC55(1) -------------AGL2        <---------AHL20(2)                             <---------LBD16 -------------AGL1        <---------AHL20(1)                            <---------ALFIN1 ------------>AGL1      <---------YAB1                                 <---------REM1(2) >ANAC55(2)      --------->YAB1 <---------YAB1                         -------->P     ----------->GT1 -ANAC55(2)     <-------TEIL  <-----------GT1              <---------AHL20(2)        ----------->GT1 >ANAC46<---------ARR11(3)--------->AHL20(1)               --------->AHL20(2)     ---------->DOF2---- ============MADS_MADS --------->AHL20(2)                 --------->AHL20(2) ---------->DOF2 -------- ------------AGL15  --------->YAB1  --------->YAB1  <---------CCA1(2) ----------->RAV1(1)   ---------   caataatggagatcaacattcataatattatattactattatgccctcgacatcatatcatttatttctggccaacacggaaaggaaaggataaaaaagt  3106200                                           --------->LBD16                                          --------->ANAC55(2)                                          <---------ANAC55(2)                                          --------->ANAC46                                      <----------DOF2                    <---------YAB1   <---------HSFB2a(1)                  --------->ATHB12   --------->HSFB2a(1)                  <---------ICU4 --------->TOE2(1)                 <---------YAB1  --------->TOE1(1)                 --------------->AGL15                 --------->ICU4 <---------LBD16                    <---------------AGL15              <---------YAB1    ------>ZmHOX2a(1)             <------------CBF      --------->AHL20(2) ------->GT1--------->YAB1     --------------------->WRI1   <---------YAB1----------->GT1 <---------AHL20(2) ->DAG2 --------->ICU4    <---------HSFC1(2)          <---------MYB52(1)---------->DOF2  --------->YAB1 ->DOF2<----------DOF2    --------->HSFC1(2)   --------->ICU4--------->ATHB12  --------->AHL20(2)  --   cgtaaatggcattatcgtgattattagacacttcctcggactttccgtaattatctggtagtatcattgctccataaagaaaaaaatgaaataaaaatga  3106300              <---------ANAC58              ----------->GT1              <---------ANAC46           <---------WOX13(1)                     <-----------GT1          <------------CBF                   <--------ATHB1         --------->ATHB12                    --------->AHL20(2)        <---------YAB1                       --------->ATHB51                   --------->AHL20(2)      <---------At4g35610                    <---------AHL20(2)                --------->AHL20(2)    <---------WOX13(1)                      --------->ICU4                     <---------AHL20(2)   <------------CBF       <---------ZAT2    <---------ATHB51            <----------DOF2  --------->ATHB12   *TSS <---------At4g35610<---------ICU4         ---------->ID1 <---------YAB1   <---------YAB1          --------->YAB1           <-----------GT1     ---------->ID1 ------->YAB1 <---------ANAC58         ----------->GT1      <----------DOF2--------->AHL20(2)   atagtgattgctgattgggtataattcgagctgtttttttgctgtaataatttcacaattctctttttttttcgcttttaaataattttgtctctccatc  3106400  Previous    Next  AGI:  At5g09950.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G33170.1); similar to hypothetical protein OsI_002601 [Oryza sativa (indica cultivar-group)] (GB:EAY74754.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73858.1); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAB89038.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 3102878    to: 3105865    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g09960.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64850.1); similar to 4D11_4 [Brassica rapa subsp. pekinensis] (GB:AAZ67518.1) Range:  from: 3106321    to: 3107830    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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