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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                        ============
                                                                                        ------>ZmHOX2a(2)
                                                                                       <------ZmHOX2a(2)
                                                                                       <---------RVE1(1)
                                                                                      --------->ARR14(2)
                                                                                      --------->ARR14(3)
                                                                                      --------->ARR11(3)
                                                                                      <---------ARR14(2)
                                                                                      <-----------ARR10
    <---------ANAC58                                                                  <---------ARR14(3)
    <---------ANAC58                                                                  <---------ARR11(3)
--------->HSFB2a(1)                  <---------HSFB2a(2)                            ----------->ARR10
<---------HSFC1(2)              <---------ETT(2)                                  ---------->DOF2
<---------HSFB2a(1)        --------->YAB1--------->GLK1(1)                     --------->HSFB2a(2)
--------->HSFC1(2)   --------->GLK1(2)   <---------GLK1(1)<-------TEIL   --------->ATHB12<----------DOF2
>ARR11(3)           <---------GLK1(2)--------->HSFB2a(2) --------->GLK1(2)     <---------HSFB2a(2)
-ARR11(3)   <---------ARR14(2)  --------->ETT(2)<-----------HVH21     --------->TOE2(3)=============
 
cgaattttcgtagcgaaaccagagattctataatgtcgatcgagaactccctgtctcgagattcaatggtttaccttgattactggaaagatcttttctg  3092900
                           <------ZmHOX2a(1)
                         <---------TOE2(3)
                         <---------TOE1(3)
                      --------->DOF5.7(2)
                     --------->TOE2(3)
            <------ZmHOX2a(1)
         <---------HSFB2a(2)                                                                      --
         --------->HSFB2a(2)                                                                 ------>ZmHOX2a(1)
<---------AHL20(2)   --------->TOE1(3)   ------->TEIL            <-----------GT1           ------>ZmHOX2a(2)
===================HOX2a_HOX2a      ----------->GT1          <---------YAB1                =========
===================HOX2a_HOX2a<------ZmHOX2a(1)    <---------ANAC46                  <------------CBF
 
aatttttttcatcgaggagaagaacgttaaggaggaagaaggtgaatcttacttctgtgaaactcttattacgctcttagaattcgaatattgatcctct  3093000
                     -------->P
                  <---------ANAC58
                  <---------ANAC58
                 <---------At4g35610
            <-------TEIL
           --------->ARR14(1)
          --------->ARR11(1)
          <---------ARR14(2)
          --------->ARR14(2)
          <---------GLK1(2)                                                                 --------
        ----------->ARR10                                                                 <------MYB83
      ------>ZmHOX2a(1)            <---------ZAT6                                         <------MYB46(1)
     --------->TOE2(3)         <------------CBF                                        <------ZmHOX2a(1)
------->ANAC55(2)--------->At4g35610                            --------->ZAT18  --------->ZAT6
=============HOX2a_HOX2a    ------------>CBF    <------------CBF<---------ZAT18 --------->ZAT18
 
tacatattccttagattcgctgcttacctccatcaattgtgttaacttcggtattggtttcgatttgtgctctagagattatttgcactaggaaggtgaa  3093100
                                                                                                 <--
                                                                                                 ---
                                                                                                 <--
                                                                                            --------
                                                                                            <-------
                                                                                            --------
                                                            --------->ZAT2                  <-------
                                                     <---------At4g35610                   <--------
                                                 --------->GLK1(2)                      <---------GLK1(1)
                                               --------->KAN4(1)                      --------->ATHB12
                                               <---------KAN4(1)     --------->YAB1   <---------ICU4
                                              <---------KAN4(2)  <------ZmHOX2a(1)   --------->ICU4
                                  --------->ALFIN1   --------->At4g35610             <---------YAB1
                     ------------>CBF<---------WOX13(1)     <---------ZAT2         --------->YAB1---
->ALFIN1    --------->GLK1(2)<---------AtLEC2--------->YAB1 <---------At4g35610   --------->ICU4 <--
 
ggaactgtagccgagactctgttttgcaatgtgcaaggtgatggattagaataatctgcttacagctaggaatcagagtttcgaaatgatgatttctgga  3093200
                                                                                              ------
                                                                                             -------
                                                                                             <------NtERF2
                                                                                           <--------
                                                                                           <--------
                                                                                        --------->ALFIN1
    <----------DOF2                                                                    ------->MYC3
-------HSFC1(2)                                                                        <-------MYC2
------>HSFC1(2)                                                                        <-------MYC3
-------HSFB2a(1)                                                                       ------->MYC2
->HSFC1(1)                                                                            <---------bZIP60(2)
--HSFC1(1)                                                                            <---------ANAC58
->HSFB2a(2)                                                     --------->YAB1        <---------TGA1a
--HSFB2a(2)      --------->ANAC46                     <---------ANAC58    --------->ARR14(2) -------
-LBD16 <---------AtMYB61                              <---------ANAC58    <---------ARR14(2) -------
------>HSFB2a(1) --------->ANAC58               --------->ARR14(2) ---------->DOF2    <---------ANAC58
-------At4g35610 --------->ANAC58               <---------ARR14(2) =============================bZIP_DOF
 
agcttctcttttggtcgaagacgcgactatgggacttaatttcgcagtgccgattttgctggagtaatcaaaatgcggttttggagggaacgtggcaggg  3093300
                                                             --------->ANAC55(2)
                                                           <-----------RAV1(2)
                                                    <------MYB83
                                                   <---------DEAR3(1)
                                                   --------->MYB46(2)
                                                   --------->MYB55(2)
                                                   <---------AtMYB61
                                                   --------->MYB111(1)
                                                   --------->MYB111(2)
                                                   <---------MYB46(3)
                                                  <---------MYB55(1)
                                                  <--------P<---------TOE2(3)
    <------ZmHOX2a(1)                            <-------GAMYB
  <---------TOE2(3)                             <---------MYB46(3)
----->GT1                         --------->ARR14(2)----------->GT1
-->ANAC58                         <---------ARR14(2)<------MYB46(1)
---RAV1(2)                   ------>NtERF2      --------->MYB111(2)        <---------GLK1(2)   <----
-ANAC46                    <---------RAP2.6(2)  --------->MYB55(2)    <-----------GT1          <----
---->GT1                  <---------LBD16      <---------AtMYB61   --------->YAB1             ------
-->ANAC58             --------->ICU4        <---------AtMYB61----------->GT1               ---------
 
aaaataaggaacatatggtagcgccattatgcggccaaattcgagtattggtggttggtgattcaggtaatattaacaaattctcgtttccatagatttg  3093400
                                        ---------->DOF2              ------>ZmHOX2a(1)
                                    ---------->DOF2    <---------ZAT14                       <------
                      <---------------AGL15            <---------ZAT18                       -------
      >>>>>>>ZML2     --------------->AGL15            --------->ZAT14        <------ZmHOX2a(1)   --
--MYB83              ===============================================================================
--MYB46(1)           ----------------->AGL3            --------->ZAT18 ---------->DOF2      <-------
--->MYB59 <---------DAG2  <---------AHL20(2)     <---------ANAC46   --------->TOE2(3)       --------
>ARR11(1) <----------DOF2--------->AHL20(2)     ---------->ID1      --------->TOE1(3) --------->YAB1
 
gtaatggttctagctttttaagtagccatttaatggaactaaagaaagtttgtcgtagtgcacaaactcatccttaaagaaggagctaatgagaagattt  3093500
      <---------WOX13(1)              --------->YAB1
    --------->ATHB12       --------->HSFB2a(2)
   <---------YAB1          <---------HSFB2a(2)
   --------->ICU4    --------------->AGL15
 <---------ICU4      <---------------AGL15
 --------->YAB1     <-----------------AGL2
<---------YAB1      <-----------------AGL1                       <---------ARR11(3)
--------->ICU4      <-----------------AGL3                      --------->REM1(1)
---GLK1(1) <---------GLK1(1)       ------>MYB83           --------->ZAT18
-->GLK1(1) --------->CCA1(2)       ------>MYB46(1) <---------ANAC55(2)
------->YAB1        ----------------->AGL3         <---------ANAC46
======================================MADS_MADS    <---------ANAC58
--ARR11(3)<---------ARR14(2)     <---------MYB59   <---------ANAC58
->ARR11(3)--------->ARR14(2)  <---------ARR14(2)   --------->ANAC55(2)                          <---
 
ctcatgatgattggatatgagtttctacttgtggaacctaataagagtcaagtttcgtaagtctactacatcttctccactattgagcaaagttttatct  3093600
                ----------->GT1
               --------->ALFIN1
             --------->ALFIN1
           <---------ANAC46
           <---------ANAC58
           <---------ANAC58
           <---------ANAC55(1)
           <------MYB46(1)
          --------->MYB59
          --------->MYB111(1)                  ---------->DOF2                                 <----
 --------->GLK1(1)                   <---------At4g35610                                      <-----
 <---------GLK1(1)                  ------->TEIL        ------>ZmHOX2a(1)      --------->ATHB12<----
------LBD16<------MYB83   <---------CCA1(2) <-----------HVH21        <---------ALFIN1         <-----
 
ctggatatcaaattaggtgtgggaaaatcatctcttgtgcatctcattgtcaaaggctcctctattgttcgcccatctcaaactattggatgtacagttg  3093700
                                  <---------------AGL15
                                  <---------HSFB2a(2)
                                  --------------->AGL15                                      <------
                                 <-----------------AGL2                                    <--------
  <---------TOE1(3)           <---------GLK1(2)                                      <---------GLK1(1)
  <---------TOE2(3)        --------->AHL20(2)                                    <---------HSFC1(1)
--MYB83                --------->YAB1                                            --------->HSFB2a(2)
----AtMYB61         <---------HSFB2a(2)      ---------->DOF2                     --------->HSFC1(1)
--MYB46(1)          --------->HSFB2a(2)  ----------->GT1                         <---------HSFB2a(2)
----MYB46(3) <---------At4g35610 <-----------------AG            <-----------GT1<---------LBD16
 
gtgtcaaggtaacttaagctgttctataaaaaaaattctcgatatggttaaagagagcatgggataagtttccctacttagtttctggaactctctttgg  3093800
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AGI:  At5g09910.1   
Description:  ATP binding / GTP binding / transcription factor binding. similar to LIP1 (LIGHT INSENSITIVE PERIOD1), GTPase [Arabidopsis thaliana] (TAIR:AT5G64813.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80534.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Miro-like; (InterPro:IPR013684); contains InterPro domain RNA polymerase sigma factor 54, interaction; (InterPro:IPR002078)
Range:  from: 3093273    to: 3094933    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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