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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
============
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
RVE1(1)
--------->
ARR14(2)
--------->
ARR14(3)
--------->
ARR11(3)
<---------
ARR14(2)
<-----------
ARR10
<---------
ANAC58
<---------
ARR14(3)
<---------
ANAC58
<---------
ARR11(3)
--------->
HSFB2a(1)
<---------
HSFB2a(2)
----------->
ARR10
<---------
HSFC1(2)
<---------
ETT(2)
---------->
DOF2
<---------
HSFB2a(1)
--------->
YAB1
--------->
GLK1(1)
--------->
HSFB2a(2)
--------->
HSFC1(2)
--------->
GLK1(2)
<---------
GLK1(1)
<-------
TEIL
--------->
ATHB12
<----------
DOF2
>
ARR11(3)
<---------
GLK1(2)
--------->
HSFB2a(2)
--------->
GLK1(2)
<---------
HSFB2a(2)
-
ARR11(3)
<---------
ARR14(2)
--------->
ETT(2)
<-----------
HVH21
--------->
TOE2(3)
=============
cgaattttcgtagcgaaaccagagattctataatgtcgatcgagaactccctgtctcgagattcaatggtttaccttgattactggaaagatcttttctg
3092900
<------
ZmHOX2a(1)
<---------
TOE2(3)
<---------
TOE1(3)
--------->
DOF5.7(2)
--------->
TOE2(3)
<------
ZmHOX2a(1)
<---------
HSFB2a(2)
--
--------->
HSFB2a(2)
------>
ZmHOX2a(1)
<---------
AHL20(2)
--------->
TOE1(3)
------->
TEIL
<-----------
GT1
------>
ZmHOX2a(2)
===================
HOX2a_HOX2a
----------->
GT1
<---------
YAB1
=========
===================
HOX2a_HOX2a
<------
ZmHOX2a(1)
<---------
ANAC46
<------------
CBF
aatttttttcatcgaggagaagaacgttaaggaggaagaaggtgaatcttacttctgtgaaactcttattacgctcttagaattcgaatattgatcctct
3093000
-------->
P
<---------
ANAC58
<---------
ANAC58
<---------
At4g35610
<-------
TEIL
--------->
ARR14(1)
--------->
ARR11(1)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
GLK1(2)
--------
----------->
ARR10
<------
MYB83
------>
ZmHOX2a(1)
<---------
ZAT6
<------
MYB46(1)
--------->
TOE2(3)
<------------
CBF
<------
ZmHOX2a(1)
------->
ANAC55(2)
--------->
At4g35610
--------->
ZAT18
--------->
ZAT6
=============
HOX2a_HOX2a
------------>
CBF
<------------
CBF
<---------
ZAT18
--------->
ZAT18
tacatattccttagattcgctgcttacctccatcaattgtgttaacttcggtattggtttcgatttgtgctctagagattatttgcactaggaaggtgaa
3093100
<--
---
<--
--------
<-------
--------
--------->
ZAT2
<-------
<---------
At4g35610
<--------
--------->
GLK1(2)
<---------
GLK1(1)
--------->
KAN4(1)
--------->
ATHB12
<---------
KAN4(1)
--------->
YAB1
<---------
ICU4
<---------
KAN4(2)
<------
ZmHOX2a(1)
--------->
ICU4
--------->
ALFIN1
--------->
At4g35610
<---------
YAB1
------------>
CBF
<---------
WOX13(1)
<---------
ZAT2
--------->
YAB1
---
->
ALFIN1
--------->
GLK1(2)
<---------
AtLEC2
--------->
YAB1
<---------
At4g35610
--------->
ICU4
<--
ggaactgtagccgagactctgttttgcaatgtgcaaggtgatggattagaataatctgcttacagctaggaatcagagtttcgaaatgatgatttctgga
3093200
------
-------
<------
NtERF2
<--------
<--------
--------->
ALFIN1
<----------
DOF2
------->
MYC3
-------
HSFC1(2)
<-------
MYC2
------>
HSFC1(2)
<-------
MYC3
-------
HSFB2a(1)
------->
MYC2
->
HSFC1(1)
<---------
bZIP60(2)
--
HSFC1(1)
<---------
ANAC58
->
HSFB2a(2)
--------->
YAB1
<---------
TGA1a
--
HSFB2a(2)
--------->
ANAC46
<---------
ANAC58
--------->
ARR14(2)
-------
-
LBD16
<---------
AtMYB61
<---------
ANAC58
<---------
ARR14(2)
-------
------>
HSFB2a(1)
--------->
ANAC58
--------->
ARR14(2)
---------->
DOF2
<---------
ANAC58
-------
At4g35610
--------->
ANAC58
<---------
ARR14(2)
=============================
bZIP_DOF
agcttctcttttggtcgaagacgcgactatgggacttaatttcgcagtgccgattttgctggagtaatcaaa
atgcggttttggagggaacgtggcaggg
3093300
--------->
ANAC55(2)
<-----------
RAV1(2)
<------
MYB83
<---------
DEAR3(1)
--------->
MYB46(2)
--------->
MYB55(2)
<---------
AtMYB61
--------->
MYB111(1)
--------->
MYB111(2)
<---------
MYB46(3)
<---------
MYB55(1)
<--------
P
<---------
TOE2(3)
<------
ZmHOX2a(1)
<-------
GAMYB
<---------
TOE2(3)
<---------
MYB46(3)
----->
GT1
--------->
ARR14(2)
----------->
GT1
-->
ANAC58
<---------
ARR14(2)
<------
MYB46(1)
---
RAV1(2)
------>
NtERF2
--------->
MYB111(2)
<---------
GLK1(2)
<----
-
ANAC46
<---------
RAP2.6(2)
--------->
MYB55(2)
<-----------
GT1
<----
---->
GT1
<---------
LBD16
<---------
AtMYB61
--------->
YAB1
------
-->
ANAC58
--------->
ICU4
<---------
AtMYB61
----------->
GT1
---------
aaaataaggaacatatggtagcgccattatgcggccaaattcgagtattggtggttggtgattcag
gtaatattaacaaattctcgtttccatagatttg
3093400
---------->
DOF2
------>
ZmHOX2a(1)
---------->
DOF2
<---------
ZAT14
<------
<---------------
AGL15
<---------
ZAT18
-------
>>>>>>>
ZML2
--------------->
AGL15
--------->
ZAT14
<------
ZmHOX2a(1)
--
--
MYB83
===============================================================================
--
MYB46(1)
----------------->
AGL3
--------->
ZAT18
---------->
DOF2
<-------
--->
MYB59
<---------
DAG2
<---------
AHL20(2)
<---------
ANAC46
--------->
TOE2(3)
--------
>
ARR11(1)
<----------
DOF2
--------->
AHL20(2)
---------->
ID1
--------->
TOE1(3)
--------->
YAB1
gtaatggttctagctttttaagtagccatttaatggaactaaagaaagtttgtcgtagtgcacaaactcatccttaaagaaggagctaatgagaagattt
3093500
<---------
WOX13(1)
--------->
YAB1
--------->
ATHB12
--------->
HSFB2a(2)
<---------
YAB1
<---------
HSFB2a(2)
--------->
ICU4
--------------->
AGL15
<---------
ICU4
<---------------
AGL15
--------->
YAB1
<-----------------
AGL2
<---------
YAB1
<-----------------
AGL1
<---------
ARR11(3)
--------->
ICU4
<-----------------
AGL3
--------->
REM1(1)
---
GLK1(1)
<---------
GLK1(1)
------>
MYB83
--------->
ZAT18
-->
GLK1(1)
--------->
CCA1(2)
------>
MYB46(1)
<---------
ANAC55(2)
------->
YAB1
----------------->
AGL3
<---------
ANAC46
======================================
MADS_MADS
<---------
ANAC58
--
ARR11(3)
<---------
ARR14(2)
<---------
MYB59
<---------
ANAC58
->
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ANAC55(2)
<---
ctcatgatgattggatatgagtttctacttgtggaacctaataagagtcaagtttcgtaagtctactacatcttctccactattgagcaaagttttatct
3093600
----------->
GT1
--------->
ALFIN1
--------->
ALFIN1
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
<---------
ANAC55(1)
<------
MYB46(1)
--------->
MYB59
--------->
MYB111(1)
---------->
DOF2
<----
--------->
GLK1(1)
<---------
At4g35610
<-----
<---------
GLK1(1)
------->
TEIL
------>
ZmHOX2a(1)
--------->
ATHB12
<----
------
LBD16
<------
MYB83
<---------
CCA1(2)
<-----------
HVH21
<---------
ALFIN1
<-----
ctggatatcaaattag
gtgtgggaaaatcatctcttgtgcatctcattgtcaaaggctcctctattgttcgcccatctcaaactattggatgtacagttg
3093700
<---------------
AGL15
<---------
HSFB2a(2)
--------------->
AGL15
<------
<-----------------
AGL2
<--------
<---------
TOE1(3)
<---------
GLK1(2)
<---------
GLK1(1)
<---------
TOE2(3)
--------->
AHL20(2)
<---------
HSFC1(1)
--
MYB83
--------->
YAB1
--------->
HSFB2a(2)
----
AtMYB61
<---------
HSFB2a(2)
---------->
DOF2
--------->
HSFC1(1)
--
MYB46(1)
--------->
HSFB2a(2)
----------->
GT1
<---------
HSFB2a(2)
----
MYB46(3)
<---------
At4g35610
<-----------------
AG
<-----------
GT1
<---------
LBD16
gtgtcaag
gtaacttaagctgttctataaaaaaaattctcgatatggttaaagagagcatgggataagtttccctacttagtttctggaactctctttgg
3093800
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AGI:
At5g09910.1
Description:
ATP binding / GTP binding / transcription factor binding. similar to LIP1 (LIGHT INSENSITIVE PERIOD1), GTPase [Arabidopsis thaliana] (TAIR:AT5G64813.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80534.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Miro-like; (InterPro:IPR013684); contains InterPro domain RNA polymerase sigma factor 54, interaction; (InterPro:IPR002078)
Range:
from: 3093273
to: 3094933
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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