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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                              ------
                                                                                            --------
                                                                                            <-------
                                                                                           <xxxxxxxx
                                                                                          <xxxxxxxxx
                                                                                          <---------ALFIN1
                                                                                          xxxxxxxxxx
                                                                                         xxxxxxxxxxx
                                                                                      <-----------TCP11(1)
                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxx
                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxx
                                              --------->ARR14(2)                    <---------At4g35610
                                              <---------ARR14(2)                <---------PCF2------
                                         --------->ZAT18                       ----------->TCP11(1)
                                         <---------ZAT14                     --------->ALFIN1xxxxxxx
                                   <------ZmHOX2a(2)                       <-----------RAV1(1)------
                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxx>smallRNA(fl3)
                               xxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                               xxxxxxxxxxxxxxxx>smallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                               xxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                       <----------DOF2   --------->ZAT14           <---------ARR11(3) <xxxxxxxxxxxxx
                    ------>NtERF2 <---------ARR11(3)               --------->ARR11(3)<xxxxxxxxxxxxxx
       --------->YAB1xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->RVE1(1) --------->At4g35610
      <---------ATHB12<---------DAG2xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)
     <-----------ARR10<----------DOF2<xxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
 <---------At4g35610---------->ID1--------->ARR11(3)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
----ZAT18    <----------DOF2  xxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<---
->bZIP60(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->GLK1(2)  xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
 
actcagcaaatcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccatcggcccacacg  2975100
   --------->ZAT6
 <-----------GT1
--->ANAC58
->ANAC46
--ALFIN1
xxxxxxxxxxxxsmallRNA(si3)                                                                         --
xxxxxxxxxxxsmallRNA(si3)                                                                         <--
xxxxxxxxxxx>smallRNA(fl3)                                                                   xxxxxxxx
xxxxxxxxxxxxxxx>smallRNA(se3)                                                        xxxxxxxxxxxxxxx
xxxxxxxxxxx>smallRNA(fl3)                                                            xxxxxxxxxxxxxxx
xxxxxxxxxxx>smallRNA(fl3)                                                          <---------ANAC46
--->ANAC58                                                                         <---------ANAC58
xxxxxxxxxxxx>smallRNA(se3)                                                         <---------ANAC58
--->ANAC46                                          <----------DOF2              xxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxsmallRNA(l2)                  xxxxxxxxxxxxxxxx>smallRNA(i)     <---------ZAT18  xxxxxxxxx
xxxxxxsmallRNA(le3)  <------ZmHOX2a(1)<---------ANAC58                <---------ANAC58   <---------ANAC58
------ARR11(3) <---------TOE2(3)      <---------ANAC58                <---------ANAC58   <---------ANAC58
 
atattaactctattttttaagggaggaagcccgtttagatagcttgctatctgggctttcacgagtctcccatgcgttgcactattgcgagggcttggct  2975200
       --------->AHL20(2)
  ------>NtERF2
  --------->LBD16
 --------->ANAC58
 --------->ANAC46
 --------->ANAC58
--------->MYB46(3)
------->GAMYB
------>P<---------AHL20(2)                             --------->ANAC58
-------ALFIN1      <---------TOE2(3)      ----------->GT1      --------->AHL20(2)
xxxxxxx>smallRNA(fl3)           --------->DAG2         --------->ANAC58               <---------ANAC58
xxxxx>smallRNA(si3)<---------TOE1(3) ---------->DOF2  --------->DAG2                  <---------ANAC46
xxxxxxx>smallRNA(le3)          ---------->DOF2<---------AHL20(2)              <-------TEIL
xxxxxxx>smallRNA(si3)     --------->AHL20(2) --------->AHL20(2)<---------AHL20(2)  <----------DOF2 -
xxxxxxx>smallRNA(fl3)<------ZmHOX2a(1)--------->DAG2 ---------->DOF2      ------->TEIL<---------ANAC58
 
caacccgccatttattcagtctaaggaaataaaaaaaagctaaagtgattaaatcgaaaagccaaataaaatccatgaacgtccgtctttcttgtatagc  2975300
                                                                  --------->AHL20(2)
                                                                  <---------AHL20(2)
                                                                  --------->AHL20(1)
                                                                  <---------AHL20(1)
                                                                 --------->AHL20(2)
                                                      <---------------AtSPL3
           <----------DOF2                            --------------->AtSPL8
     <---------MYB52(1)                               <---------------AtSPL8                 ------>ZmHOX2a(1)
    <-------GAMYB                                 <---------ARR11(3)                         -------
    >>>>>>>>>TAC1                                 --------->AHL20(1)             <---------ALFIN1
    <---------ZAT2         --------->YAB1       ------->TEIL     <---------AHL20(2)        ---------
------------>AtMYB77    --------->YAB1       ----------->GT1<---------MYB59      --------->AtMYB61
---------->HVH21<------ZmHOX2a(1)       ---------->DOF2     --------->TOE2(3)   --------->MYB46(3)
 
ccatgacagttgggcttaaggagcccataatcaaaacccatacaaaagatgtatatattagtacctaaataaattgcaattcgaccactctgtttcctga  2975400
                                                                               <-----------GT1
                                                                             --------->ARR11(3)
                                                                             <---------ARR11(3)
                                                                     ------->PIF5
                                                                     <-------PIF5
                                                                     ------->MYC4
                                                                     <-------MYC4
                                                                     ------->MYC2
                                                                     <-------MYC2
                                                                     <-------MYC3
                                                                     ------->MYC3--------->ANAC58
                                                                    --------->O2 --------->ANAC58
                                                                    <---------O2 <---------ANAC55(2)
                                                                    <---------TGA1a
                                                                    <---------PIF3(3)
                                                                    >>>>>>>>>>HY5--------->ANAC55(2)
               <---------GLK1(2)                                    --------->PIF3(3)
               --------->ARR14(2)                  <---------YAB1   --------->ANAC46
     ------>ZmHOX2a(1)             --------->TOE2(3)              <---------ALFIN1    ------>ZmHOX2a(1)
    --------->TOE2(3)              --------->TOE1(3)            <----------------PIF3(2)
 <-----------GT1                  ----------->RAV1(2)<---------GLK1(2)  ------------>CBF           <
-->LBD16       <---------ARR14(2)-------->P      --------->MYB52(1) --------->TGA1a  <---------ANAC58
-->RAV1(2)   --------->ANAC46    =============================================MYC_MYB<---------ANAC58
 
gatttatcctcagtacccgatactctaaaattgacttacctgaaattcaacataacgattctcaaacttccacgtggcaatatcacgtccttgcacttgg  2975500
                                                                                --------->KAN4(2)
                                                                               <---------HSFC1(2)
                                                                               <---------HSFB2a(1)
                                                                               --------->HSFC1(2)
                                                                               --------->HSFB2a(1)
                                                                              <---------ARR14(2)
                                                                              --------->GLK1(2)
                                                                              <-----------ARR10
                               ---------->DOF2                            <---------HSFB2a(2) ------
                          <---------DEAR3(2)      <------NtERF2    <-----------GT1      <---------ALFIN1
                      --------->bZIP60(1)       <---------DEAR3(1) --------->YAB1    --------->ANAC46
                      <---------O2              *TSS      --------->HSFB2a(2)<---------GLK1(2)<-----
                      <---------bZIP60(1)     <-----------HVH21 --------->YAB1--------->ARR11(3)
       <-----------GT1--------->O2         <---------At5g28300  <---------ICU4--------->ARR14(2)
---------REM1(2)   --------->ANAC46       <-----------GT1<---------ETT(2) --------->HSFB2a(2) ------
 
tcttcacgattttcgtttttaaacgacgtcgtttcaaagagcattataccgtcgtcgatgtcgagaattatcaccatctagaatcttccctcaacctcta  2975600
           <---------ARR11(1)
           <---------ARR14(2)
           --------->ARR14(2)
          <---------CCA1(2)
        <---------ANAC58
        <---------ANAC58                        --------->ANAC58                                ----
        <---------ANAC46--------->TOE1(3)       --------->RAP2.6(2)             <----------DOF2 ----
     <----------DOF2    --------->TOE2(3)       --------->ANAC46               --------->TOE2(3)<---
--->HSFB2a(2)  ------>ZmHOX2a(1)                --------->ANAC58             <-----------GT1   -----
----HSFB2a(2) --------->TOE2(3)              --------->DEAR3(1)             <-----------GT1<--------
--->HSFC1(1)  --------->TOE1(3)      <----------DOF2                 <-----------GT1     ------>ZmHOX2a(2)
 
gaaaacaactttcgtatccttcaaaaaccctaaaccctagcttttgcacagacgcaatttcatcgcatcattttgcaattttcctttactgatctgtcac  2975700
                                                        --------->ZAT14
                                                        --------->REM1(2)                  <--------
                                                       <---------MYB52(1)                  <--------
                                                       ----------->HVH21                   <--------
                                                      <-----------HVH21                    ---------
                                       --------->At4g35610      --------->ARR14(2)         <--------
                              <-----------ARR10       --------->LBD16           <---------ZAT2
                             --------->At4g35610    <------NtERF2               --------->ZAT2
----->AtMYB61                <---------At4g35610   ------>NtERF2<---------ARR14(2)     --------->At4g35610
----->DEAR3(1)               <---------ZAT2       <---------DEAR3(1)            --------->At4g35610
------ALFIN1                 --------->ZAT2       --------->ANAC46              <---------At4g35610<
---->MYB46(3)             --------->LBD16         --------->DEAR3(1)------>ZmHOX2a(1)  <---------At4g35610
---HVH21               -------->P   ------>ZmHOX2a(1)<---------ANAC46    <----------DOF2  <-------TEIL
 
cacctcttgaatttcgaaaccatggctaccgcagctctcctccgctctattcgacgccgtgaagtcgtttcctctcctttctcagcttacagatgcgtaa  2975800
    <---------ARR11(3)
    --------->ARR11(3)         <-----------GT1
   <---------CCA1(2)        <----------DOF2                                       ------>ZmHOX2a(2)
-ANAC55(2)              <---------CCA1(2)                                   --------->ANAC55(2)
-ANAC46          ------>ZmHOX2a(2)                                  <---------MYB59
-ANAC58        --------->ARR14(2)         <---------MYB52(1)       <---------At4g35610        <-----
>ANAC55(2)     <---------ARR14(2)        <-----------HVH21       <---------ZAT18<---------ARR11(3)
-ANAC58        <---------ARR11(3)--------->ANAC55(2)             --------->ZAT18--------->ARR11(3)
----------DOF2 --------->ARR11(3)--------->ANAC46   --------->YAB1 --------->At4g35610   <----------
 
gtctttatatcttctctcgatcttcttctatcttttacgagacctgttagcgaaatcagagtttcaagtgagctaacttacatgatctgattttactctt  2975900
                                                          ------>ZmHOX2a(2)                    -----
                                                        <---------ARR14(2)                   -------
                                                        --------->ARR14(2)          --------->ANAC46
                                                    <---------ANAC58                --------->ANAC58
                                                    <---------ANAC58                --------->ANAC58
              --------->ANAC58                      ----------------->AGL1        ---------->DOF2
              --------->ANAC46                 <---------ANAC58                <----------DOF2 -----
  <---------YAB1                   <---------MYB46(3) ----------->HVH21      <---------At4g35610
-----DOF2     --------->ANAC58 <---------YAB1  <---------ANAC58              --------->At4g35610   <
-GT1  <-------TEIL   <---------HSFB2a(2)   --------->GLK1(1)          <-----------RAV1(1)--------->ALFIN1
 
ttcttatggttcatttctcgcaatctcgaaaatgatgtttgttcgaatttccttggcctgatctggttcaatcttgttgcagctttcaagcagtgggaaa  2976000
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AGI:  At5g09585.1   
Description:  U2.5; snRNA. gi|17664|emb|X06476.1|ATU25 Arabidopsis thaliana U2 RNA gene (U2.5)
Range:  from: 2974556    to: 2975307    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At5g09590.1   
Description:  mtHSC70-2 (HEAT SHOCK PROTEIN 70); ATP binding / unfolded protein binding. similar to MTHSC70-1 (mitochondrial heat shock protein 70-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT4G37910.1); similar to CPHSC70-1 (chloroplast heat shock protein 70-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT4G24280.1); similar to cpHSC70-2 (HEAT SHOCK PROTEIN 70-7), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G49910.1); similar to Heat shock 70 kDa protein, mitochondrial precursor (GB:P37900); similar to Heat shock 70 kDa protein, mitochondrial precursor (GB:Q01899); similar t
Range:  from: 2975549    to: 2978751    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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