Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           --------->DAG2                           --------->ANAC58                           --------->ANAC58 ---->LBD16          <---------ANAC58    <---------TOE1(3) --->ANAC46          <---------ANAC58    <---------TOE2(3)        <-------TEIL ---LBD16          <---------YAB1 --------->ANAC58       --------->ANAC58                     ------- >ARR14(2)       --------->YAB1   --------->ANAC58       --------->ANAC58                    -------- -ARR14(2)      <---------YAB1    --------->ANAC46   <-----------HVH21           --------->ZAT6     -   catcaaattagttcgagtatgatacttgcaatccacaagccataaggtttaagactgtcaagacaacattcgtagccactattacactactgaaacagta  2888100                                        <------ZmHOX2a(2)                                       <---------ARR11(3)                                       --------->AGP1                                  <---------DEAR3(1)                                      --------->At4g35610                            <---------ARR14(2)                             ------>ZmHOX2a(2)                                       <---------ARR11(3)                           <---------ARR14(2)                                        --------->ARR11(3)                           <-----------ARR10     ------>ZmHOX2a(2)                   --------->ARR14(2)                           --------->ARR11(3)   <------ZmHOX2a(2)             --------->CCA1(2)                           <---------ARR11(3)  --------->ARR14(2)            <---------ARR14(2)                           --------->ARR14(2)  --------->ARR11(3)            --------->ARR14(2)   --------->ANAC58       =====================HOX2a_HOX2a                 --------->LBD16   --------->ANAC46       <------ZmHOX2a(1)    <---------ARR11(3)         --------->LBD16   --------->ANAC58       ==============================HOX2a_HOX2a      --------->LBD16 -->At5g28300             =============================HOX2a_HOX2a       <---------LBD16   ---------- --->GT1     <-----------GT1<------ZmHOX2a(2)  <---------ARR14(2)       <---------LBD16------>ZmHOX2a(2) -------->MYB52(1)      <---------TOE1(2)  ---------->DOF2          --------->ARR14(2)<------ZmHOX2a(2)   aataccagcaaaattatacgatttcataggatctaatgccagatcaaaagatcccaatctaacattcccaaattccccggatacgaagatcggtggaaaa  2888200                                      --------->ANAC58        ----------------->AGL3                           <---------ARR14(2)                 ----------------->AGL2                           --------->ARR14(2)               --------->ANAC58                         --------->LBD16                    --------->ANAC58                   ------                        <---------ANAC46         --------->MYB52(1)                     ---------->DOF2                        <---------ANAC58        ----------->HVH21        --------->ANAC58      ------                  <---------YAB1    ---------->DOF2<---------ANAC46      --------->ANAC46 --------->ANAC58        --------->DAG2  <---------ANAC58        ----------->TGA1         --------->ANAC58 --------->ANAC58 ->GT1 ---------->DOF2 <---------LBD16--------->ANAC58      --------->ANAC46           --------->AtMYB61   acaaaatcaaaaaggaacttacaattgcggatttgagggaaagcccgagagtgacggagaacaggccagaaatagaagcaattgacaaaccaaagccaag  2888300                                                           <---------DOF5.7(2)                                                          --------->WRKY12                                                          --------->WRKY38(1)                                                         --------->DOF5.7(2)       <------MYB83                                                        <-------GAMYB          --------->ATHB12                                                     ------>ZmHOX2a(1)         <---------MYB46(3)                                                <---------ANAC58         <-----------HVH21     <-----                                                <---------ANAC58       --------->DEAR3(2)      <-----                    --------->HSFB2a(2)        <---------HSFB2a(1)  ------->GAMYB<--------P    ------              ------>MYB46(1)                  --------->HSFB2a(1) --------->MYB46(3)     -----------         --------->ARR14(2)                    --------->HSFC1(2)  <---------MYB52(2)   <---------ALFIN1         <---------ARR14(2)                    <---------HSFC1(2)--------->MYB52(1)<------MYB46(1) --->ANAC58   ------>MYB83                 --------->DEAR3(1) ------->GAMYB   <---------ATHB12 ------ --->ANAC58 <---------MYB59            --------->MYB46(3)<---------MYB52(1)<---------WRKY12--------->TOE1(3)   gcaagagagcgaaaccgaacttgtagaatcgacgagcgtaatccaccgatgcttcctccgttaaccccaacggaccgtcaatggttggccaaacctgagc  2888400                                                                                        --------->REM1(2)                                                       <---------ANAC58                 --------->ZAT14                                                       <---------ANAC55(2)             --------->ALFIN1                                                 <---------YAB1                       --------->LBD16       <---------ARR11(3)              --------->ARR14(2)                            <---------ANAC58       --------->ARR11(3)              <---------GLK1(2)  <---------ARR14(2)         <---------ANAC46     <---------YAB1                    <---------ARR14(2) --------->ARR14(2)         <---------ANAC58   --------->CCA1(2)             --------->ARR14(2)    <---------ANAC46          <---------DEAR3(2) ----ZAT2   --------->ETT(2)     <---------GLK1(2)     <---------ANAC55(1)     <------NtERF2 ----At4g35610             --------->ARR14(2)<---------GLK1(2)               <---------DEAR3(1) --->At4g35610             <---------ARR14(2)--------->ARR14(2)             <---------AtMYB61 >RAV1(2)   <---------ETT(2)     <---------ARR14(2)    <---------ANAC58     --------->ATERF1(1) --->ZAT2------>ZmHOX2a(2) <---------GLK1(2) <---------ARR14(2)  <-------TEIL<---------MYB46(3)   tgaagagatgatcgtcgacaatgggtttggattcggattcggattcggattccgattgcgtatagggttcagactggggtcgtcgctccgtgtagcctcc  2888500                                                                                              -------                                                                                              -------                                                                                   <---------O2                                                                                   <---------bZIP60(1)                                                                                   --------->O2                                                                                   --------->bZIP60(1)                                                                              --------->MYB52(1)                    --------->DAG2                                            <---------DOF5.7(2)----                   ---------->DOF2                                          --------->DOF5.7(2)  ----               <---------TOE2(3)                         <----------DOF2   --------->YAB1--------->ARR14(2)              --------->MYB52(1)        ---------->DOF2  <---------DAG2    --------->TOE2(3)  -------            <---------MYB52(2)         *TSS   ----------->GT1           --------->MYB52(1)   --------         --------->MYB46(3)---------->DOF2   ----------->GT1         --------->ANAC46  <---------DEAR3(2)   atttttgctcagccactaacgaaaagttgaaaagctcgcgaataaagaagttaaaacgactttttagttaaacacaacgataacgacgtcgtttccacgt  2888600        <----------DOF2  <---------ATHB12 -->ANAC58                                                           <---------YAB1 -->ANAC58                                                       <---------DAG2 --->TEIL                                                        <----------DOF2 ----->SPL7  --------->AtLEC2                                <---------ZAT14             ------------ -->ANAC46 <---------AtLEC2                          <---------TOE2(3)       <---------AHL20(2) ------->AtSPL8            --------->RVE1(1)         <---------TOE1(3)   <---------AHL20(2)     -----   accactcagtctttcatggaaactgcaaaatatcagcatttacttcaatttgtttaaggtgactgaactttataaatatttgattactcaaattgtactt  2888700                                                                                           <---------bZIP60(2)                                                                                           <---------ANAC58                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                        ----------->HVH21                                                                                       <---------WOX13(1)                                                                                      <---------ANAC58                                                                                      <---------ANAC58              <----------DOF2                                                     <---------ANAC58  --------->TOE2(3)                                                               <---------ANAC46 --->AtSPL8--------->ARR11(3)                                                     <---------TGA1a ---->YAB1 <---------ARR11(3)        --------->YAB1      <---------YAB1           <---------ANAC58   ataacatcaacaagagctttacaaatatcaaaacttcaattgtaatggaatttgaagctataaatgtctccatagacatgagtgacttgagtgacttgga  2888800                  --------->YAB1                 <---------ATHB12                --------->ANAC58                --------->ANAC58            --------->ANAC58            --------->ANAC46            --------->ANAC58                          --------->ANAC58          <-----------RAV1(2)                         --------->ANAC58  <------ZmHOX2a(2)                           <---------TOE2(2)  --------->CCA1(2)                           <---------TOE1(2)                   --------->ANAC58 --------->ARR14(2)                          ------>ZmHOX2a(1)               --------->MYB52(1) <---------ARR14(2)                --------->At5g28300--------->ANAC46       <---------DOF5.7(2) --------->AGP1--------->WOX13(1) ----------->GT1 <-----------GT1--------->CCA1(2)--------->ANAC58   acagatccaagttcaggcaatcaaaactcgcatactcggtaacattcctatgttacaagcctacatgatatggtttggctaacgacgcatcatctcatcg  2888900                  <---------ZAT6                 <---------YAB1           <---------ARR11(3)          <------MYB83      <---------YAB1                                       <---------ARR11(3)          <------MYB46(1) --------->CCA1(2)                                    --------->ANAC58     --------->ANAC46  <---------YAB1     <---------ZAT2                       --------->ANAC58    <---------LBD16  <-----------GT1      --------->ZAT2            ---------->DOF2        <---------   ggcatactcggaaggtattagtattacgatatgatcaaacctcgagctcgactgaatatagaaccatgaagaaagagctacaagctctcaactctttcgc  2889000  Previous    Next  AGI:  At5g09310.1    Description:  Identical to Gamma-secretase subunit PEN2-like protein [Arabidopsis Thaliana] (GB:Q9FY84); similar to unnamed protein product [Vitis vinifera] (GB:CAO46410.1); contains domain PD337913 (PD337913); contains domain PTHR16318 (PTHR16318) Range:  from: 2887193    to: 2888539    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g09320.1    Description:  vacuolar sorting protein 9 domain-containing protein / VPS9 domain-containing protein. similar to ATVPS9A (ARABIDOPSIS THALIANA VACUOLAR PROTEIN SORTING 9A) [Arabidopsis thaliana] (TAIR:AT3G19770.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61792.1); contains InterPro domain Vacuolar sorting protein 9, subgroup (InterPro:IPR013995); contains InterPro domain Vacuolar sorting protein 9 (InterPro:IPR003123) Range:  from: 2888656    to: 2892017    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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