Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->ZAT2       <---------ZAT2       <---------At4g35610     <-----------RAV1(2)   ----------->RAV1(1)  ----------->HVH21 -------->ANAC58 -------->ANAC58 -------->ANAC46 ----->LBD16 -->NtERF2 ---NtERF2 ---->RAP2.3(3)                                      <---------At4g35610 ---->RAP2.6(2)                                      --------->At4g35610 ---->RAP2.3(2)                                    <---------ZAT14 ---->DEAR3(1)                                     --------->ZAT14 ---->RRTF1(2)                                <------MYB83 ---->RRTF1(3)                                --------->At4g35610 ---->ANAC46                                  <---------At4g35610 --->RRTF1(1)                               <---------MYB55(1) --->RAP2.3(1)                              <-----------RAV1(2)                                <----- -->At4g35610                            --------->ANAC58                             --------->ANAC55(2) ---ATERF1(1)                          --------->MYB52(1)   --------->ARR14(2)        <---------ANAC46 -->LBD16                         <------NtERF2    --------->ZAT18                    --------->RAP2.6(2) ->ANAC46                --------->ANAC58--------->ANAC58   --------->GLK1(2)    --------->At4g35610 --ALFIN1                --------->ANAC58--------->ANAC46   <---------ARR14(2)   <---------At4g35610 ->DEAR3(1)----------->HVH21 --------->ANAC58 <------MYB46(1)          <---------ANAC58 <---------MYB52(1) -LBD16--------->At4g35610   --------->ANAC58--------->MYB55(2)        <---------ANAC58<---------RAP2.6(3)   gcaagcgacagctgtgatactgtgatcactcaaggcagagcaaacggcaggtgtccactgagaatccaagtttccgagccctaatctgccgtaatctcca  2837700            ------>NtERF2            <------NtERF2            --------->LBD16           --------->ANAC46           --------->RAP2.6(2)           --------->RAP2.3(2)                                                  <---------ARR11(1)           --------->DEAR3(1)                                         <---------MYB59          --------->RAP2.3(1)                                        --------->ANAC58          <---------LBD16                                      ------>MYB46(1)  ------->TEIL  <------        --------->DEAR3(1)                                   --------->AtMYB61  --------->GLK1(2)     --------->TGA1a                                         --------->MYB46(3) --------->ARR14(2)     <---------O2                                        --------->MYB46(3)     <---------ARR14(2)     <---------ALFIN1                                <---------At4g35610       <---------ARR14(1)     --------->O2                                  --------->REM1(1) <-----------------AGL1  --------     --------->ANAC46                          --------->At4g35610   --------->ANAC58        <-------   <---------ALFIN1                         ----------->RAV1(2)------>MYB83    <---------CCA1(2) ----ALFIN1--------->RRTF1(2)               <---------At4g35610--------->MYB52(1)       ---------->DOF2   cttccccacatcgccgcaaatcgtttcccgctctcgctcgatacccatctgctacagcaaacaccaatcggacccaatttcgaatcttttaaaagcccac  2837800                        <---------REM1(2)                      --------->ANAC46                      ----------->HVH21                     ------>ZmHOX2a(1)        --------->At4g35610                 <---------ARR14(2)           <---------At4g35610                 --------->ARR14(2)         --------->SPL7                                -----------             --------->LBD16    --------->GLK1(1)                                 ---------->DOF2 ---ALFIN1===========================HOX2a_HOX2a          <---------WRKY38(1)   --------->YAB1   ---- ->ZAT18  ==================HOX2a_HOX2a   <-----------HVH21              --------->HSFB2a(2)   <----- --ZAT18  <------ZmHOX2a(2)   <------ZmHOX2a(1)<---------MYB52(1)        <---------HSFB2a(2)<--------   tcgtacaattcgatccctgaatcctcgacacaggaattcgaactcgtccgatggctctagtcaacattttcacttgtagaaatcaaaagaaaatgtgatt  2837900    <---------ARR11(3)    --------->ARR11(3)   --------->GLK1(1)                         <<<<<<<<<TBF1            <---------ARR11(3) >GT1<------ZmHOX2a(2)                    <<<<<<<<<TBF1               <---------GLK1(2) ------>DOF2                           <<<<<<<<<TBF1                  --------->ARR11(3) ----YAB1                           <<<<<<<<<TBF1          ---------->DOF2 -YAB1          ----------->GT1<---------GLK1(2)      <---------MYB52(1)    <---------AtLEC2   aaaggagatcaatttagatagttaaaatggatggattcttcttcttcttcttctccgtttgaaaagagactagatttttcatggagagattgaactcgta  2838000                        --------->ANAC58                        --------->ANAC58                                             --------->YAB1                   --------->MYB46(3)                                             --------->HSFB2a(2)            --------->ICU4                                                ---------->DOF2     -------            <---------YAB1                                          <---------MYB52(1)        <------         --------->ICU4 --------->ANAC46                         --------------->AGL15        <------       --------->ANAC55(2)              <---------WOX13(1)      <-----------------AGL1     *TSS       <---------ANAC55(2)    >>>>>>>>>TBF1               --------->ANAC55(2)     <---------HSFB2a(2)   aatggaatcacatgatgatcaacaacaaggaagaagaaactgatggatagcaagaatgctacgtcttcccgttattgaaagtctctagaatgacaagatt  2838100                                                                          --------->ANAC46                                                   <---------TOE2(3)      --------->ANAC58          <                          <-----------GT1     <----------DOF2             --------->ANAC58          -                      <----------DOF2        <---------DAG2    ------------>CBF                     - -->ARR11(3)       <---------ARR11(3)  --------->ARR14(2)     <-----------GT1                  <----- ---ARR11(3)<----------DOF2            <---------ARR14(2)  <---------------AtSPL8      <------------CBF ---GLK1(2) ------>ZmHOX2a(1)          <---------GLK1(2)   --------------->AtSPL8   ------------>CBF-   tttcgaaatcggtcctttccagttcttttttctatttgtcaaattcgccttttaagtttgttttgtacaatttcacacccaaatcagacaattggttttg  2838200                        <---------YAB1                      -------->HAHB4                      <---------ICU4                <---------ANAC58                     <-------TEIL          <----------DOF2--------->YAB1     --------->AHL20(2) ---------ARR14(2)    --------->YAB1       --------->AHL20(1) -------->GLK1(2)    --------->ICU4        <---------AHL20(1) ------>TEIL    <---------ANAC58          --------->AHL20(2)               --------->YAB1 ----ANAC46    ---------->ID1   --------->YAB1<---------AHL20(2)     <---------ZAT6 -------->ARR14(2)   <---------ATHB51<------ZmHOX2a(1)  ---------->ID1    <---------YAB1   tgaatctgttttcttttggcttaattatgatcactcataggaaaatatatatatgttcgtcgtatcaaatagtgtgatcatactacttgatagtctcaca  2838300                                  <-------TEIL                         <---------AHL20(2)                                               <xxxxxxxxxx                      --------->AHL20(1)                       <---------ARR14(2)    ------->TEIL               <----------DOF2<-------TEIL          --------->ZAT6 --------->At4g35610  <----------DOF2          <-----------GT1--------->AHL20(2)  --------->ZAT18   ------->TEIL  --------->YAB1 ---------       <---------ICU4 <---------ARR11(3)     <---------ZAT14   --------->ARR14(2)  <-------TEIL    --   ttaactcaatatttacactttgaatatataaatacatacatgatgagtttactaacacttggatgtatatgctgaacaattaagatgcatctttgtcttc  2838400                      --------->AHL20(2)                      <---------AHL20(2)                --------->ARR11(3)                <---------AHL20(1)           <---------AtMYB61                <---------ARR11(3)        --------->ALFIN1             <------ZmHOX2a(1)         <---------TOE2(3)                     <---------TOE2(2)           <---------TOE2(3)     <---------ARR11(3)                    --------->ANAC58 xxxxxxxxxxxxxsmallRNA(le3)      --------->ARR11(3)                    --------->ANAC46 ->ID1     <---------TOE1(3)  --------->AHL20(2)                       --------->ANAC58 ------------->AGL15 <---------AHL20(2)<---------TOE1(3)           <-----------GT1   tcttattttggctaaggatatattttaaatgaataaatcttgaggttgtggtcatttgtgcctctatatatacaagacataggtttattttgtctcacac  2838500                            --------->DAG2          --------->TOE2(3)                           ---------->DOF2          <----------DOF2            ---------->ID1       <                <<<<<<<<<TBF1    <-------TEIL     <---------YAB1        <----------DOF2             <      <----------DOF2   --------->ANAC58         <---------ARR11(3) <------------------------ANAC81 <  <----------DOF2       --------->ANAC58         --------->ARR11(3)<----------DOF2 <----------DOF2  <   atacctttctttctcttcttcttcttacgaaaagtttcatcacattcacattatctttaactttggtctcttttcttttttgtctcttttctcttcttga  2838600  Previous    Next  AGI:  At5g08710.1    Description:  regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related. similar to UVR8 (UVB-RESISTANCE 8) [Arabidopsis thaliana] (TAIR:AT5G63860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71642.1); contains InterPro domain Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091) Range:  from: 2834744    to: 2838091    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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