Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->YAB1                                   --------->ANAC46           <---------AHL20(2)               ------->TEIL    --------->ANAC58                <--------           --------->AHL20(2)               <---------ARR14(2)                              ---------        --------->YAB1                      --------->ARR14(2)                        --------->MYB52(1)     <----------DOF2               --------------------->WRI1  ---------->DOF2    <---------TOE2(3) -------->DEAR3(2)              >>>>>>>>>>>>>>>>>LFY        --------->ANAC58    ---------->DOF2   aaaccggctttaataatataagaatgcatactcttcccattgtatgaatccccaaggcgaacacacaaaggaagaacaatcgcaaaggtaacagagctcg  2747400                         <----------DOF2                        <---------ANAC58                        <---------ANAC46                        <---------ANAC58               --------->ANAC58                  <-------TEIL                         --------->ANAC46             ---------->DOF2                       --------->ANAC58     <-------TEIL --------->ZAT14                  --------->ANAC58 <---------TOE2(3)<---------ZAT14              --------->MYB46(3)        --------->YAB1         <---- <---------TOE1(2)--------->ZAT18              --------->ANAC46     --------->ZAT14        ---------- -ZAT2  --------->At4g35610                  <-----------GT1   ---------->DOF2   <---------KAN4(1)<-- >ZAT2  <---------At4g35610        --------->TOE2(3)   --------->ANAC58<-----------HVH21--------->ANAC46   gcttaggttcatctgcaaagtgcattgctttgaaaaacctcatcgtttcacgaccgcaagaaacagaaagtccagtcagaacaatattccaaacaacagg  2747500                                                                                             --------                                   --------->YAB1                                            --------                                  <---------ATHB12                                        <---------ZAT2                                --------->WOX13(1)                                        --------->ZAT14                            <---------HSFB2a(2)            <-------TEIL                   --------->ZAT2 --ZmHOX2a(1)               --------->HSFB2a(2)       <---------ANAC46              --------->TOE1(3) ->RAV1(1)            --------->ARR11(3)       ------>ZmHOX2a(1)                    --------->TOE2(3) ----ZmHOX2a(2)       <---------ARR11(3)     ----------->RAV1(2)                 --------->ARR14(2) -   atcaagactgtccatttgcctaaacatcttctggcaatcatccattctcctgcatttcgcatacatgttaagaactgacttcgaaacctcagagcaggct  2747600                              <---------ZAT18                         --------->REM1(2)                         <---------ZAT14                --------->ANAC58                --------->ANAC46                <---------ANAC55(2)                --------->ANAC55(1)       <---------ZAT2    --------->ZAT14       --------->ZAT2   --------->AtLEC2      ------>MYB83    ------->GAMYB                                 <----------DOF2      ------>MYB46(1) =============================MYC_MYB       --------->ANAC58 ->ANAC58       --------->ANAC58                <------ZmHOX2a(2)--------->ANAC58--------->LBD16 ->ANAC58       --------->ANAC55(2)      ===========================bZIP_DOF    <---------HSFB2a(2) ---------->HVH21  --------->MYB52(1)    <---------TGA1a ---------->DOF2        --------->HSFB2a(2)   atatgaccaagcttgaacacgcaaccgtgcagagccctccctgatgtgagatcagacactgaagcacaagctttgacaacatccagaaaaaccctgtgat  2747700                                                                                   --------------->AGL15                                                                    --------->KAN4(2)                                                                    --------->ARR11(3)                                                                    <---------ARR14(2)                                                        <----------DOF2    --------->MYB46(3)                                                 --------->PCF2     <---------ARR11(3)                                             --------->DAG2         --------->ARR14(2)                                          <---------RAP2.6(3)      <---------KAN4(1)              <--                                         <---------ANAC46          <---------GLK1(1)<----------DOF2 -                                        <-----------------AGL1    ---------->TaMYB80<---------DAG2---                                        ----------------->AG <---------LBD16--------->MYB52(1)    ---               ---------->DOF2          ----------------->AGL1 --------->LBD16 ------->GAMYB      <--   <---------HSFB2a(2)                  ===========================================================MADS_MADS   --------->HSFB2a(2)                  <-----------------AGL2--------->LBD16 --------->MYB46(3) ----  ----------------->AGL1  --------->GLK1(2) ---------->DOF2  ----------->RAV1(2)  ----------------->AGL2   cagttccaaaaccagacaaaagtctgaaattctgaacaaattgccgtaaagggcccatctttcccctgaatatcccaacaacggccctttattagcaaaa  2747800            <---------MYB46(3)         <------------CBF   --------->ANAC46 -------ARR11(3) -------->TOE2(2) ------>ARR11(3)                       --------->GLK1(1)                             ------->GAMYB ------>GLK1(2)                       --------->ARR14(2)      --------->CCA1(2)     --------->MYB46(3) ---------ARR10                   ----------->RAV1(2)        <---------ARR11(3)<---------REM1(1) ----->RVE1(1)<-----------HVH21 <---------ALFIN1    <---------GLK1(2)     --------->ETT(2)      -----   aatctacgttacattgggtcagacattttcacaaacacctgatatgcaagaacagtttctctagatataagcgttgtcgagatgtaacagacatagagaa  2747900           <---------ARR11(3)          ------------>CBF                            ----------->RAV1(1)           --------->ARR11(3)         --------->ANAC58                            ----------->HVH21           <---------AHL20(1)         --------->ANAC46                          --------->ANAC58      ------------>CBF                --------->ANAC58                          --------->ANAC46     --------->ANAC58                --------->WOX13(1)                         --------->ANAC58   <-     --------->ANAC58           <---------AHL20(2)                            ---------->DOF2      <-    --------->DAG2         ------------>CBF<---------ATHB12             <---------ALFIN1           <-   ---------->DOF2         ------>ZmHOX2a(1)     --------->ALFIN1     ------>ZmHOX2a(1)        <----- ---->GLK1(2) <----------DOF2   --------->AHL20(2)                   --------->ANAC46          <-----   actgaaaaagcaatatctttatcaagctcctcaatttatcaagcaatgaaggtgtctctcagtctccatctcctccacatacaagcgacagtttttgtct  2748000                                                                                   --------->MYB59                                                                          --------->AHL20(2)                                                                          <---------AHL20(2)                                                                         --------->AHL20(2)                                                                     <---------AHL20(2)                                                        ----------->GT1  <---------AHL20(2)                    <---------AHL20(1)                 ----------->GT1  <---------AHL20(2)      ----------->GT1                       --------->AHL20(2)       --------->ARR11(3) --------ANAC58     <---------ARR11(3)      --------->YAB1           --------->AHL20(1) --------ANAC46     --------->ARR11(3)      <---------AHL20(2)       <---------AHL20(1) --------ANAC58   ------->TEIL          --------->AHL20(2)           --------->AHL20(2) ----ANAC58    <---------YAB1           <---------AHL20(2)           <---------ARR11(3)  ------>ZmHOX2a(1) ----ANAC58 --------->ICU4             --------->AHL20(2)     ---------->DOF2 <---------AHL20(2)   tgagtgaattgaaaattatgaatatatatggactattccgatttaattaaaactgaagggctaaaaaagaatatattaatttacttaggtccttacatga  2748100                             --------->YAB1                          <---------ANAC46                          <---------ICU4                       <---------ARR11(3)                          --------->ATHB51                     --------->ARR11(3)                   -                          --------->ATHB12                    <---------CCA1(2)                    --                          --------->YAB1                  --------->AHL20(2)                       --                          <--------HAHB4                  ----------->TBP                     *TSS --                <---------YAB1                           --------->AHL20(1)                   -------  <-----------GT1        --------->AHL20(2)              <---------AHL20(1)             --------->ANAC46 --------->AHL20(2)      --------->ICU4 <----------ID1  --------->AHL20(2)       <----------DOF2 <---   aaatttactatttctattcttattcgaataattagaagaaaaaaaacaaattccataaatatatatatctttcgtcgactctgcttttacacatctctca  2748200                                                                           ----------->HVH21                                                                         <------MYB83                                                                         ----------->GT1                                                                         --------->At4g35610                                                                         <---------At4g35610                                                                         <------MYB46(1)                                                                        <---------MYB46(3)                                                                       <-----------RAV1(2)                                                                      <------NtERF2                                                                     <-----------HVH21                                                                     ------>NtERF2                                                                     <---------RAP2.6(3)                                                                    <---------ATERF1(2)                                                                    --------->ATERF1(2)                                                                    --------->DEAR3(1)                                                                   <---------LBD16                                                                   <------NtERF2                                                                  <---------RAP2.3(1)                                                                  ------>NtERF2                                                                  <---------ATERF1(1)                                                                 <---------DEAR3(1)                                                               <---------RAP2.3(1)                                                               <-----------HVH21                                                               <---------ATERF1(1)                                                              <---------bZIP60(1)                                                              --------->bZIP60(1)                  <-                                                              <---------ANAC58             <-------GAMYB                                                              <---------ANAC46            --------->MYB55(2)                                                              <---------DEAR3(1)          --------->MYB52(2)              --------->YAB1                                  <---------ANAC58    <---------At4g35610          <---------YAB1                                      <---------bZIP60(2) --------->At4g35610     ----------->GT1                                     <---------ICU4<---------MYB55(1) <---------MYB46(3)    --------->DAG2                                      --------->ICU4<---------MYB52(1) <---------MYB55(1)   ---------->DOF2                                      <---------ATHB51--------->MYB55(2)--------->MYB111(2) --------->At5g28300                              --------->TOE1(2)--------->ATERF1(1)   <--------P<- ---------->GT1      --------->At4g35610     <---------HSFB2a(1) --------->DEAR3(1)  <---------At4g35610 ------->ANAC58      <---------At4g35610     <---------At4g35610--------->ATERF1(1)  --------->At4g35610 ------->ANAC46      <---------ZAT2          --------->HSFB2a(1)<------NtERF2     --------->ZAT2<---- ------->ANAC58      --------->ZAT2          --------->At4g35610--------->RAP2.3(1) ------------>AtMYB77 ---->HVH21--------->YAB1         ----------->TGA1--------->TOE2(2)--------->RAP2.3(1)  <-------GAMYB ------ALFIN1 <---------ICU4      ----------->HVH21------>ZmHOX2a(1)<---------DEAR3(1) <---------MYB46(3)   cacggtaaagttacaataatctcagcttgaatcacactgacgaaggcatcttcctgcgattatggcgtcgccggcaggtgaaacagcagcggttgttgag  2748300  Previous    Next  AGI:  At5g08490.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G02330.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78103.1); similar to hypothetical protein OsI_006656 [Oryza sativa (indica cultivar-group)] (GB:EAY85423.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67100.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 2745209    to: 2747758    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g08500.1    Description:  transmembrane CLPTM1 family protein. similar to transmembrane protein, putative [Arabidopsis thaliana] (TAIR:AT5G23575.1); similar to Os04g0441900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052878.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ71285.1); similar to P0076O17.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE02511.1); contains InterPro domain Cleft lip and palate transmembrane 1 (InterPro:IPR008429) Range:  from: 2748194    to: 2751772    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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