Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------ARR14(2)                                      ------>NtERF2                   --------->ANAC58                                     <---------ETT(2)                 --------->ANAC58                            <---------ALFIN1                <------NtERF2 <---------HSFC1(2)                          ------>ZmHOX2a(1)                 --------->LBD16         <---------GLK1(2)                       --------->HSFB2a(1)        ------>NtERF2      <------NtERF2  --------->ARR14(2)                      <---------ARR14(2)       <---------ATERF1(1)  ------>NtERF2 --------->LBD16                      --------->ARR14(2) ---------->DOF2   --------->ANAC58     <---------LBD16<-----                      ------->TEIL ------>NtERF2 --------->DEAR3(1)<----------ID1--------->LBD16-----                <----------ID1    --------->DEAR3(1)       --------->ANAC58     --------->LBD16<-----              <------ZmHOX2a(1)   ----------->HVH21       <---------LBD16 --------->HSFC1(2)   ------   tcaaactcttcttcaaggacgacgaatcctccatctccgacgacaaagacaccgccttggtccgcaatggcgacgaaacatccccggattcgcatcggat  2713000                                         ----------->RAV1(2)                                        --------->GLK1(2)                  <---------ANAC58                                      --------->HSFC1(2)                   <---------ANAC58                                      <---------HSFC1(2)                   <---------ANAC46                                  <---------REM1(1)                        --------->ANAC55(2)                               --------->ICU4                              <---------ANAC55(2)    <--                               <---------YAB1                         <------MYB46(1)           ----- ----GLK1(2)                 --------->YAB1                         --------->ALFIN1            <---- ---->GLK1(2)               --------->ICU4 <---------HSFB2a(2)   --------->DAG2          --------->YAB1 ----ARR14(2)          --------->HSFB2a(2) --------->HSFB2a(2)  ---------->DOF2         <---------ATHB12 --->ARR14(2)       <-----------GT1  ------->TEIL    <------ZmHOX2a(2)<------MYB83      --------->ICU4   tctgaaacccaaattcaagaatttactggaatgatgatgaagcttctgggtcgagatcgaaattgagaaagtgggtttcgtaattgagcaatgatgcatc  2713100                                    ----------->GT1                                 *TSS                       <---------AHL20(2)                                                    --------         <---------ANAC58    <---------ANAC46                                                <-------         <---------ANAC58    <---------ANAC58                                     --------->REM1(2)         <---------ANAC46    <---------ANAC58                                    --------->ALFIN1 -------YAB1          --------->ARR11(3)       ----------->GT1                  <---------ZAT14     < ---->YAB1            <---------AHL20(1)     <---------LBD16                   --------->ALFIN1    <- -----ICU4            <---------ARR11(3) <---------ARR14(2)                ------->GAMYB --------->GLK1(2)   atgagttttttgcgtatgtgtgtatatatttgtgtgtgaggcaaaactggggaaaaaatgaaattaggcgatttcaacagagtgtggagagactctgctt  2713200                              --------->WOX13(1)                            ------------>CBF                           -------->P                          ------->GAMYB                         <---------MYB111(1)                         <---------MYB111(2)                         <---------MYB46(2)                         <---------MYB52(2)                         --------->MYB46(3)                         <---------MYB55(2)                      --------->DEAR3(1)                                           <---------------AGL15                    ------>NtERF2                                                  --------------->AGL15                    --------->LBD16                                               ----------------->AGL1                   --------->ANAC46                                               ----------------->AGL2                --------->ARR14(2)         ---------->DOF2                --------->ARR11(3)                <---------ARR14(2)     ----------->RAV1(1)                <---------ARR11(3)               <----------TaMYB80      ------>NtERF2                      --------->AHL20(1)        <----------DOF2------>NtERF2  --------->ANAC46                    --------->AHL20(2)        --------------------->WRI1   <---------ZAT18               ----------->GT1----------------->AGL3 ->At4g35610   <---------GLK1(1)     --------->ZAT18            --------->YAB1    <-----------------AGL3 --At4g35610   --------->GLK1(1)  <---------At5g28300  ----------->GT1    <---------AHL20(2) ---------MYB52(1)<---------LBD16<---------ICU4        --------->At4g35610<---------AHL20(1) ------GAMYB  ---------->TaMYB80<---------ATHB12  >>>>>>>>>TBF1<---------YAB1   <----------ID1   cggttagcaactttgggatatccgccaactaccaattactgcgccaaaagaagaagaagctaaatatgatagttaatatattgggccaaatatagaagcc  2713300                                    --------->TOE2(3)                     --------->ARR11(3)                     <---------ARR11(3)                    <---------GLK1(1)  <------------CBF                    --------->GLK1(1) --------->ATHB51                    <---------CCA1(2)<---------YAB1                <---------TOE2(3)----------->RAV1(1)     --------->CCA1(2)           <---------ALFIN1                                 --------->MYB52(1)    <---------ARR11(3)    ---------->DOF2                          --------->ANAC58              ----    --------->ARR11(3) --------->TOE2(3)  <-----------HVH21        --------->ANAC58              ----  ----------->ARR10 <---------RVE1(1)--------->ICU4        ------------>CBF---------->ID1        ----   cagtaagatatgtttattagggatatcttaaagcccaacattattgtcactgggactctagcccaatacaggcatttgtcttaaaaacggcgaagtctca  2713400                                     --------------->AGL15                                     <---------ALFIN1                                     --------->AtMYB61                                     <---------------AGL15                                    <-----------------AGL1                                  --------->DEAR3(1)                                  <---------ALFIN1                                  --------->AtMYB61                                 --------->MYB46(3)                               <---------ALFIN1                               --------->AtMYB61                               --------->DEAR3(1)                                                <---         --------->CCA1(2)    --------->MYB46(3)                                                -----    ------->GAMYB           <---------ALFIN1                                                   ------ --------->MYB52(1)         --------->AtMYB61                                                  <----- ----------->RAV1(1)        --------->ANAC46                                    --------->ARR11(3) ----->ANAC58              --------->MYB46(3)                                   <---------ARR11(3) ----->ANAC46            <-----------GT1   <---------HSFB2a(2)              ---------->DOF2    <----- ----->ANAC58 *TSS     <-----------HVH21   --------->HSFB2a(2)     <-----------GT1       <----------DOF2   agccaacagagatagggttttcgattgtcaccaccaccaccacttctggtaacgcagtgtctctgattttcacttggttaaagacctctagcttcacggt  2713500                       <------NtERF2                      <---------RAP2.6(3)                      <-----------TGA1                      <-----------HVH21                      ------>NtERF2                     --------->ATERF1(2)                     --------->RAP2.3(3)                     --------->O2                     --------->DEAR3(1)                     <---------ATERF1(2)                     --------->RAP2.3(2)                     --------->RAP2.6(2)                     --------->ANAC46                     --------->RRTF1(3)                    --------->ALFIN1                     --------->RRTF1(2)                    <---------AtMYB61                     --------->bZIP60(1)                   <---------DEAR3(1)                    --------->RAP2.3(1)                   <------NtERF2                    --------->ATERF1(1)                 <---------DEAR3(1)                    --------->RRTF1(1)                  <---------ANAC46                    --------->ERF1                      <---------ANAC58                    <------NtERF2                 <---------WRKY12             <-------PIF5    --------->YAB1 <---------ATERF1(1)          <-----------HVH21          <---------ZAT18   <---------YAB1  ------>NtERF2 ===================HOX2a_HOX2a            --------->ZAT18 --------->YAB1   --------->ATERF1(2)        =============================HOX2a_HOX2a   <---------GLK1(2) ------WRKY12     <---------ATERF1(2)        ------>ZmHOX2a(2)     <------ZmHOX2a(1)--------->At4g35610 ---->WRKY18(1)   --------->DEAR3(1)       --------->ARR11(3) --------->ALFIN1 ------->PIF5 --->At5g28300   <---------RAP2.6(2)  --------->MYB52(1)<---------ANAC58  <---------ANAC58    <------ ------HVH21   <-----------RAV1(1)    <-----------GT1  <---------LBD16    <---------ANAC58    ------- ---ZAP1   <---------DAG2        <------ZmHOX2a(1)<<<<<<<<<WRKY18<---------ANAC46 <------ZmHOX2a(1)   caaacatcataaaccttttgccgccgtcactaataggaattaactgatctcgtcaatggcggaggtggaggagattgcgcacgaggagcagaatatcgag  2713600                                                                                             --------                                                                           --------->HSFB2a(2)    ---                          ---------->DOF2                        <---------MYB52(1)          --------            ---------->DOF2       --------->ANAC58              <-------GAMYB            --------->LBD16         >>>>>>>>>TBF1 --------->ANAC46     --------->ICU4     <---------MYB46(3)      ------>ZmHOX2a(2) ---HSFB2a(2)  ----------->GT1    --------->ANAC58         --------->MYB46(3)          <---------LBD16 -->HSFB2a(2) --------->DAG2--------->GLK1(2)          <---------ATHB12    <---------HSFB2a(2)    ---   aagagggagaagaagaaaggtaaacacgagaagccgaagccatgggatgatgacccaaacatcgaccgttggacaatcgagaagtttgatccggcatgga  2713700                                 <---------ALFIN1                                --------->ZAT14                         ------->MYC2                                        <---------ANAC46                         <-------MYC2                                  --------->ALFIN1                         ------->MYC3                                  <---------ZAT6                         <-------MYC3                                  <-----------RAV1(1)                         <-------PIF5                               <------ZmHOX2a(1)                         ------->PIF5                            <-----------RAV1(2) <---------ALFIN1        <-------MYC4                       <---------ARR11(3) ->ANAC58               --------->ANAC58   <---------------AGL15 ==================RAV  <---------ARR14(2) ------>ANAC58        <---------ALFIN1<----------DOF2       --------->ARR14(2)          ------->TEIL ->ANAC58<---------YAB1 --------->ANAC58  --------->TOE2(3) <---------ARR14(2)          --------->ARR14(2) ------>ANAC58        <------------OsbHLH66------>ZmHOX2a(1)--------->ARR11(3)    <---------ZAT6   accccactggtatgactgaaaccagcacgttctcaacactctttcctcaatacagagagaagtatcttcaggagtgttggcctagagttgaatctgctct  2713800              --------->ATERF1(1)              ----------->RAV1(2)              <------NtERF2              <---------ANAC46             ------>NtERF2           <------NtERF2           --------->ATERF1(1)          <---------ATERF1(1)          <-----------HVH21         --------->ALFIN1     <---------ZAT14     --------->ZAT14              <---------ANAC46                                          <--------     --------->ZAT18              <---------ANAC58                                          <--------     --------->SPL7  --------->At4g35610                       <---------ZAT14             <---------ANAC58   <---------SPL7   --------->ANAC58                      --------->REM1(2)                <---------ANAC58 <---------------AtSPL3           <---------ANAC58     <----------DOF2                     <---------ANAC46 <------ZmHOX2a(1)  --------->ANAC58          <-----------GT1  <---------At4g35610<---------YAB1 <---------------AtSPL8          <-------TEIL --------->ZAT6   --------->ZAT14   --------->KAN4(2)   taaggagtacggtgtcgcctgcaagctcaacttggtgcgtcttcgttttcactaagtctttgtagagcagagaaattaggggttattctagttgcttttt  2713900  Previous    Next  AGI:  At5g08415.1    Description:  lipoic acid synthase family protein. similar to LIP1 (LIPOIC ACID SYNTHASE 1), lipoic acid synthase [Arabidopsis thaliana] (TAIR:AT2G20860.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65976.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Elongator protein 3/MiaB/NifB (InterPro:IPR006638); contains InterPro domain Lipoate synthase; (InterPro:IPR003698); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 2710818    to: 2713133    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g08420.1    Description:  RNA binding. similar to Os10g0452800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064737.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70862.1); contains InterPro domain K Homology; (InterPro:IPR004087) Range:  from: 2713414    to: 2716180    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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