Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   ------->GAMYB        <---------AHL20(2)        <---------ANAC58       -------->P           <---------AHL20(2)            <------MYB83        <---------ANAC58       ------>MYB83        <---------AHL20(1)             <------MYB46(1)      <-----------GT1          ------>MYB46(1)     --------->AHL20(1)            <---------AtMYB61      <---------AHL20(2)     <---------MYB111(1)   --------->AHL20(2)            --------->MYB59 ----------GT1               --------->MYB46(3)    <---------ARR11(3)            <---------MYB46(3) -----AHL20(2)       <----------DOF2     ----------->GT1     <-----------GT1     --------->MYB111(1) ---->AHL20(2)   <---------ARR11(3) ---------->DOF2<---------AHL20(2)           <--------P   -------- ----AHL20(2)  ----------->ARR10--------->MYB46(3) --------->ARR11(3)          <-------GAMYB <------- -AHL20(2)    ------>NtERF2  --------->AtMYB61  --------->AHL20(2)            <---------MYB46(3) >AHL20(2)   --------->LBD16 <---------MYB59  --------->AHL20(2)         <----------DOF2---------->DOF2   atttctattttcttgccgagatacttttggaccaaccaaaaagaagaaaataatatattttttatacattttcttctttttggttggtccaaaagtatct  2615900                                                                                                  <--                                                                                                  ---                                                                                                 ----                                                                                                 <---                --------------->AGL15                                                            ----                <----------DOF2                                                                  ----         <---------AHL20(1)                                                                      ----         <---------AHL20(2)                                                                     -----         --------->AHL20(1)                                                                     -----         --------->AHL20(2)                                                                     -----        --------->AHL20(2)                                                                     <-----        <---------AHL20(2)     <---------AHL20(2)                                        <---------AHL20(2)      --------->YAB1           --------->AHL20(2)                                    <---------YAB1<-    --------->AHL20(2)         --------->AHL20(1)         <---------TOE2(3)         <---------AHL20(2)   --------->AHL20(2)          <---------AHL20(1)      --------->AHL20(2)           --------->AHL20(2)   --------->YAB1             --------->AHL20(2)       <---------AHL20(2)           <---------AHL20(1) ->ARR11(3)     <---------DAG2<---------AHL20(2) --------->YAB1                    --------->YAB1---- --ARR11(3)     <---------------AGL15           <---------YAB1                    <---------YAB1-----   cacaataaaaataaattcctttttctagtcaaataaattttaaaaacgttatgatatataaatgttgacaaattgaagtaaaccattataatttatgggc  2616000          --------->ARR14(2)          <---------ARR14(2)         <---------RAP2.6(3) ----NtERF2 --->NtERF2 ----->RAP2.3(3) ------ATERF1(1) ----->RAP2.6(2) ----->RAP2.3(2) ----->DEAR3(1) ---->ORA47(2) ---->ATERF1(1)                           --------->SPL7 ---->DEAR3(2)              <---------At4g35610 ----ATERF1(1)             ------->TEIL --------->ZAT14                       <---------ICU4 -----NtERF2  ----------->GT1           <---------ZAT14          <----------DOF2 ----->ATERF1(2)         <-------TEIL   <---------SPL7      <<<<<<<<<MYB2    <---------YAB1 ---->RAP2.3(1) <---------ANAC46      --------->ANAC46    <------------------------ANAC81   cgcccatgggccgatatggtgtaaatgtgcatctaattccaccgtactgagaatacaaattggttttctttttttgttcatcatttcaaatagaactgaa  2616100                                    --------->GLK1(2)                          --------->At4g35610                                                    ----                          <---------At4g35610      --------->ANAC58                              ----                       <---------ANAC58            --------->ANAC58                   --------->HSFB2a(2)                      <---------MYB46(3)           --------->ANAC46         ---------->DOF2  --------                 <------MYB46(1)   --------->ARR14(2)            ----------->RAV1(2)  <---------HSFB2a(2)                 <------MYB83      <---------GLK1(2)            ------>NtERF2 --------->ANAC46   <---        --------->TOE2(3) --------->ZAT18 --------->LBD16     <---------RAP2.6(2)  --------->GLK1(2)     --------->WOX13(1)<---------ANAC58 <---------LBD16      --------->RAP2.6(3)  <---------GLK1(2) <   ttcaagtcaatctcaaatttggtttgggtgctcaagagattctccgtgataacaggccaatatttcggcctggcccattcaagcgattctcgagccgaga  2616200                                                           --------->ICU4                                                    <---------ARR11(3) <------NtERF2 ----->ARR14(2)            <---------TOE2(3)        --------->ARR11(3)--------->LBD16 ----->GLK1(2)             <---------TOE1(3)       --------->RVE1(1)<---------LBD16 ->LBD16<----------ID1  <---------AHL20(2)   ----------->GT1 <------------CBF ------ARR14(2)   <-----------TGA1      ---------->DOF2--------->TOE2(3)                      ------- ---------YAB1   --------->YAB1       --------->ANAC46----------->GT1<---------ANAC46         =======   atatgactgagggacaaaatcgtcattttaaggttactccacaaaaggagtaaatatcgtcaaaattgatggcggaaattttcatgtgtttagatcgaaa  2616300            <-----------GT1            --------->YAB1           <---------YAB1        <---------YAB1    <---------ANAC46 --------->O2 <---------bZIP60(2) --------->DEAR3(1)                             <---------At4g35610 <---------O2                                 *TSS --------->TGA1a                           <---------TOE2(3) <---------TGA1a                          <---------DOF5.7(2) --------->bZIP60(1)                      --------->MYB52(1) <---------bZIP60(1)                    --------->DOF5.7(2) --------->bZIP60(2)                  --------->MYB52(2) --->DOF2--------->YAB1             <---------MYB52(1)          <---------GLK1(1) --------->LBD16 ==========bZIP_DOF             <------------CBF--------->At4g35610              --------->LBD16   gcgacgtcgtattataacaacacatgagatgtgagattgttagttaacgaagcagacctcgattcgatttctcacaattctcccccgataactgattact  2616400                                  ------->TEIL <-------TEIL                      <-----------HVH21                        <---------ANAC58      --------->GLK1(2)               <----------DOF2                        <---------ANAC58     <---------ARR14(2)   --------->ARR11(3)                 <-------GAMYB    <---------ARR14(2)              --------->ARR14(2)               --              --------->LBD16     --------->ARR14(2)<---------ANAC58      <---------CCA1(2)    <-----           ------>ZmHOX2a(1)----------->HVH21--------->ARR14(2)   <---------ARR14(2)         ------>ZmHOX2a(2)     <<<<<<<<<TBF1<---------MYB52(1)         <---------GLK1(2)    <---------ARR11(3)       <---------ARR11(3)  <<<<<<<<<TBF1 <---------MYB46(3)--------->GLK1(2) <---------ANAC58------>ZmHOX2a(2)      --------->ARR11(3)   cttcttcttcttcctccgtcgttgtttcatgcgacgaatcggtttcagattcagtcgtggtatctctcgatcttctctatctttgtcatggatgatctgt  2616500                                     ----------->TGA1                                   <---------ICU4                                              ------                                  ------>ZmHOX2a(1)                                        --------->ARR14(2)                               ------>ZmHOX2a(1)                                           <---------ARR14(2)                      --------->ANAC55(2)                                    <---------LBD16<------ZmHOX2a(2)                     <---------TOE1(2)                                     <---------ARR14(2)------>ZmHOX2a(2) ------->REM1(1)     <---------TOE2(2)     --------->GLK1(2)     --------->YAB1      ------->TEIL ------HVH21        <-----------RAV1(2) <---------YAB1          <---------YAB1<---------ANAC46-------   tacaccagcgagtcgagcagtctcaggtaactcctcctcatgacgattctaatatccatggtgattttgataacgaggctacggatgaatcgcgatccga  2616600                                                                    <---------TOE2(3)                                                         --------->HSFB2a(2)                                      <---------WOX13(1) <---------HSFB2a(2)                                    --------->ATHB12  --------->GLK1(2)                     ---------                                    <---------MYB46(3)<---------ARR14(2)                  <---------ZAT6       <-------GAMYB               <---------YAB1     --------->ARR14(2)            ----------->HVH21      <-----------RAV1(1)   ----------->RAV1(1)      <---------GLK1(2)           <---------TOE2(3) --->LBD16              --------->TOE1(2)      <------ZmHOX2a(1)    <---------YAB1--------->ANAC55(2) -->ANAC46 <---------YAB1  ----------->HVH21  <---------YAB1   <---------ZAT6--------->GLK1(2)    <--   aacttgttctgttgtgatagagggaaactgcgacatggtgattgaattaggattggaatctggaagtgttatcgttgagaatttaggtgatagtgatatt  2616700                                                                                                  <--                                                                                   ------->TEIL   ---                                                                         --------->LBD16  --------->LBD16              <---------YAB1                                            <---------ANAC55(2)       <--         --------->YAB1                                                 <---------ANAC46 <---------LBD16         <--------ATHB1                                                 --------->ANAC55(2)     -----        <---------ATHB12                          <------ZmHOX2a(1)    <---------LBD16   <---------HSFB2a(2)        --------->ICU4    ----------->TGA1    <---------ANAC46       <---------ARR14(2)  --------->HSFB2a(2) >ARR11(3)--------->ARR11(3)               <---------ANAC46          --------->ARR14(2) <---------LBD16 -------TOE2(3)     ------->TEIL       <----------DOF2              <---------GLK1(1)  <---------LBD16   gatgttagcaatgattttgatgaacctgatgacgacgatttctttgtggggaggactgattttgggctcgagttccgcgatattgcatcttcggggaatg  2616800  Previous    Next  AGI:  At5g08139.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G60820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67946.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 2616346    to: 2617882    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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