Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <---------YAB1                           --------->At4g35610                     --------->ATHB51                     --------->ATHB12                    --------->ICU4                    <---------YAB1                                                                <--       --------->ANAC46    <---------At4g35610                                                    --- --ARR14(2)        --------->TOE2(3)                                                              --- ->ARR14(2)       --------->YAB1                          <---------ZAT6 <---------At5g28300      --- ->GLK1(2)        <---------ICU4--------->YAB1 --------->RAP2.6(3)      <-----------GT1           <-- -GLK1(2)        <---------ATHB12             --------->MYB52(1)    <------ZmHOX2a(1)      --------->DAG2   gcaatcccctcgaaacccaaacattattgagctctgataactcgacaaaaacggccaagagagttagaaaggatttaccatgtaatgctcgataagggga  2602500                                                                                                    <                                                                                                    -              <----------DOF2                                      <---------ARR14(2)               -             ------>ZmHOX2a(2)                                 <---------At4g35610                  <            <---------RVE1(1)                                  <------NtERF2                <--------            <------ZmHOX2a(2)                                 <---------ATERF1(1)          ==========           <---------ARR14(2)                                 <---------RAP2.3(1)          ------>ZmHOX2a(2)           --------->AGP1                                     ----------->RAV1(1)         ===========           <---------ARR14(3)                                <---------ATERF1(2)          <------ZmHOX2a(2)           --------->ARR14(3)                             --------->ATERF1(2)            <---------ARR14(2)           --------->ARR11(3)                             <---------ATERF1(2)            --------->ARR14(2)           <---------ARR11(3)                <---------LBD16 --------->ATERF1(2)         <---------ARR11(3)           --------->ARR14(2)      --------->ARR14(2)    --------->DEAR3(2)              --------->ARR11(3)         ----------->ARR10         <---------ARR14(2)   --------->SPL7      ======================HOX2a_HOX2a   --------->HSFB2a(2)             <---------GLK1(2)    --------->MYB52(1)  =====================HOX2a_HOX2a   <---------HSFB2a(2)        <------ZmHOX2a(2)       <---------SPL7<---------WOX13(1)   <---------ARR14(3) -------HSFC1(2)             <---------ARR11(3)      <---------ANAC58 <------MYB83--------->CCA1(2)-- ------>MYB46(3)             --------->ARR11(3)   --------->GLK1(1)--------->ARR14(2)    --------->ARR14(3) ------>HSFC1(2)             <---------ARR14(2) <------NtERF2<---------DEAR3(1)  <----------ID1    <- ------>HSFB2a(1)            --------->ARR14(2)--------->LBD16------>NtERF2 <------ZmHOX2a(1)    ---- -------HSFB2a(1)     --------->CCA1(2)<---------YAB1<---------ANAC58 <------MYB46(1)  ----------->ARR10   accatctcgacgagatcttttaagagacgacgatctagattctcattgccggagttcgtaccggcggcagattggtgaggagagagacgaagatcgtcat  2602600             --------->At4g35610        <-----------RAV1(2)     --------->ANAC58     --------->ANAC58   --------->DEAR3(1)  <------NtERF2                                                                                     <  --------->ATERF1(1)                                                                               - ------>NtERF2                                                                                     -- <---------ATERF1(1)                                                                               <- --------->LBD16                                                                                   -- ---------ATERF1(2)                                                                                <- -------->ATERF1(2)                                            <---------ZAT2                      <- -------->DEAR3(1)                                             --------->At4g35610                 -- ---------DEAR3(1)                            --------->ARR14(2)          --------->ARR11(3)  ------- ---HVH21  <------ZmHOX2a(1)                  <---------ARR14(2)  <---------At4g35610        <------- =================HOX2a_HOX2a          <----------DOF2         <---------At4g35610        --------->LBD16 =================HOX2a_HOX2a     --------->GLK1(2)           <-----------RAV1(1)        <---------ANAC46 ------->ATERF1(1)               --------->ARR14(2)          <---------RAP2.6(2)       ------>ZmHOX2a(1) --------LBD16                   <---------ARR14(2)         <---------At4g35610        ============== ----->DEAR3(1)    <---------SPL7<---------GLK1(2)      <-----------RAV1(1)            ==============   cgccggcgagccaggagctatcgtccccaaacccagaatcgctttgcaaatccatgaaatgttgctgctgctcatacatcttcttcgtcctccgtataat  2602700     <----------DOF2   --------->At4g35610 ------>ZmHOX2a(2) ------ZmHOX2a(2) -------->CCA1(2) ------->AGP1 --------ARR14(2)                      --------->ZAT2 ------->ARR14(2)                      <---------ZAT2 --------AGP1                          --------->ZAT14 --------ARR11(3)                      <---------ZAT14 ------->ARR11(3)                      <---------At4g35610                                --------->AHL20(2) -->YAB1                               --------->At4g35610                          <----------DOF2 --YAB1    --------->ATHB12      --------->GLK1(2)                           <---------AHL20(2)<----- ======HOX2a_HOX2a       ----------->RAV1(1)                   ---------->DOF2   <---------AHL20(2) =======HOX2a_HOX2a     --------->ANAC46            --------->CCA1(2)       <---------YAB1<---------AHL20(2)   agatctgcttcagtgattagtcttcaacaccagagagtctgagcagagagagagatagacgaagagaaagacttgatttttattttctttaaaaaaattc  2602800                                                                                 <---------At5g28300                                                                                 <-----------GT1                               ------>ZmHOX2a(2) ----------->RAV1(2)            <-----------GT1                            <---------CCA1(2) <-------TEIL                <---------YAB1                        <----------DOF2   <---------TOE1(2)             <-----------GT1            --              --------->LBD16--------->ARR11(3)  --------->At4g35610 <---------ICU4            <-----             <---------ANAC58<---------ARR11(3)  <---------At4g35610 --------->YAB1            ------ --TEIL      <---------ANAC58<---------AGP1 --------->TOE2(3)       <---------YAB1           <-------   gtttcattcttcgttccgagtctgagctttggatctcaatctccaacgttcatctgaaactatccaacttataattaccattttaccctcatgtttttca  2602900                               <---------ANAC58                    <---------DAG2                                                               <---                    <----------DOF2                          <---------TOE2(3)                <------ ------->ZAT14     <---------ANAC58                       --------->AHL20(2)                  ------- ------GT1         <---------ANAC58           --------->YAB1<-----------GT1                   <------ --->ZAT6<---------ANAC58      <---------ANAC58    --------->TOE2(3)  <----------DOF2       <-------- ----GT1 <---------ANAC58   *TSS<----------DOF2  ------>ZmHOX2a(2) <---------YAB1       <------------CBF   ctattctcttgacttgcccttgctttttgaatttctttccttcttctatgatcccttaaatttaacattatgctttgtttaaaatttggaaattgagatt  2603000                                    --------->ANAC55(2)                               --------------->AGL15                               <---------------AGL15                              ----------------->AGL2                              =======================================================================                              <-----------------AGL2                              ----------------->AG      ------------>CBF        <-----------------AGL1     <-----------GT1      <---------DAG2                                 <----------DOF2 --------GT1              <----------DOF2         ------>ZmHOX2a(2)<---------ANAC58 ---GLK1(2)        --------->AHL20(2)         <---------YAB1       <---------ANAC46 -->ARR11(3)       --------->YAB1   <---------ANAC55(2)            <---------ANAC58                <- ---ARR11(3)       <---------AHL20(2)     --------->KAN4(2)--------->ATHB12                       <-- -TOE2(3)     ------------>CBF----------------->AGL1     --------->TOE2(3)         <-----------HVH21   ttccattttacaatttttcaattatatgcttttccaatacgggttattctgatcgaaaacgttattgggtcgtgtctttcaatcttgtccggtcttgagc  2603100                                                                                                  ---                                                                                                 <---               --------->HSFB2a(2)                                                               ----               <---------HSFB2a(2)                                                               ----               <---------HSFC1(1)                                                                <---           <---------ARR14(2)                                                             xxxxxxxxxxx           --------->ARR14(2)                                                            --------->ICU4         <---------------AGL15                                                          <---------TOE2(3)         --------->LBD16                                                                <xxxxxxxxxxxx        --------->HSFB2a(2)   --------->ANAC58                                         xxxxxxxxxxxxxx        ----------------->AGL1--------->ANAC46                                       <---------ARR11(3)        ----------------->AG  --------->ANAC58              <-------TEIL             --------->ARR11(3)   <XXXXXXXXXXXXXXXXXXXXMIR832-5P------->TEIL     --------->ARR11(3)                xxxxxxxxxxxxxxxxx =========================MADS_MADS               <---------ARR11(3)       <---------ARR14(2)   xxxxx --------MYB52(1)          <-------TEIL          <---------CCA1(2)    <---------ANAC46xxxxxxxxxxxxxxx -------RAP2.6(3)    --------->MYB52(1)   ------->TEIL     <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   cgttttggttcccgattcgagaaaaccggttcacgaacttcatgaatctatatatctatatatacatttttggaggggatttttgaagataatgttgaag  2603200                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                 ===================================HOX2a_HOX2a                                                                 --------->LBD16                                                                 ------>ZmHOX2a(1)                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                               ------>ZmHOX2a(2)                                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                              <------ZmHOX2a(2)                                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                             <---------ARR14(2)                                                             --------->ARR11(3)                                                             --------->ARR14(2)                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                    xxxxxxxxxxxxxxxx>smallRNA(i)                                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                             <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                            --------->LBD16xxxxxxxxxxxxxxxx>smallRNA(i)                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(s)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(s)       --------->ICU4                     <xxxxxxxxxxxxxxxxsmallRNA(i) ------>CCA1(2)                           <---------LBD16  xxxxxxxxxxxxxxxx>smallRNA(s) ------ARR11(3)    <---------AHL20(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----->ARR14(2)    --------->AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----->ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------ARR14(2)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<-----------GT1<---------LBD16 xxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                ------>ZmHOX2a(2) xxxxxxxxxxxsmallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->AHL20(2) xxxxxxxxx>smallRNA(fl3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------AHL20(2) xxxxxx>smallRNA(fl3)                   <-----------GT1    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxx>smallRNA(se3)       <-----------GT1    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxx>smallRNA(si3)       ----------->GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------ARR14(2)   atttgagccataattcaacaattaattcaaatgggtgaattttacccggtttaactctgttcggatcctggataacatgtttaattctgttctgatctgg  2603300                                            ----------->GT1                                      --------->AHL20(2)          --------------->AGL15 <xxxxxxxxxxxx                                      <---------AHL20(2)          <---------MYB59    <---------ARR11(3)                                   <--------ATHB1              <-----------GT1       --------->ARR11(3)                                   <--------HAHB4          --------->AHL20(2)       --------->RVE1(1)                                   <---------ICU4          <---------AHL20(2)     --------->YAB1                                   --------->YAB1         --------->AHL20(2)      --------->AHL20(2)                                   --------->ATHB51    --------->ATHB12      --------->AHL20(2)    --                                   -------->HAHB4     <---------ATHB12       <---------AHL20(2)    xx                                  <---------ATHB12    --------->ICU4    <---------AHL20(2)       ----                --------->DAG2    <---------YAB1      <---------YAB1------>MYB83 <---------AHL20(2)--               ---------->DOF2    --------->ICU4   --------->AHL20(2)  <---------AHL20(2)       -----     <---------AHL20(2)           <---------ATHB51 <---------AHL20(2)  --------->AHL20(1)       <----    --------->AHL20(2)            --------->AHL20(2) <---------TOE2(3) --------->AHL20(2)     <------  --------->TOE2(3)             --------->YAB1    --------->AHL20(2)------>MYB46(1) --------->CCA1(1)   ataacattaatttttggaaaagttatctaaaaactaataattaaaaacgaaaattaatgatttaattaccaaatttaatataaataatatctctaaacta  2603400  Previous    Next  AGI:  At5g08120.1    Description:  MBP2C; protein binding. similar to MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G16000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67935.1) Range:  from: 2600475    to: 2602928    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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