AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                                                                     <---------ZAT2
                                                                                    --------->ANAC58
                                                                                    --------->ANAC58
                                                                                    ------>MYB46(1)
                                                                                    ------>MYB83
                          --------->ANAC55(2)                                  --------->ANAC58
                          <---------ANAC55(2)                                  --------->ANAC58
                          <---------ANAC55(1)                                  --------->ANAC46
                          <---------ANAC58                                    ------->GAMYB
                          <---------ANAC46                                   <---------ALFIN1
                     <-----------RAV1(1)                                    <---------REM1(2)
                   ----------->RAV1(2)                 --------->ETT(2) --------->ANAC58    --------
                   <---------At4g35610            <---------ANAC58      --------->ANAC58    --------
                 <-----------GT1                  <---------ANAC58      --------->ANAC46    <-------
            <---------ARR14(2)                 <----------DOF2         --------->WOX13(1)  <--------
            --------->ARR14(2)     <---------GLK1(2)  ---------->ID1<-----------HVH21--------->ZAT2-
       --------->AtLEC2   <---------ANAC58---------->DOF2          --------->bZIP60(2)     <--------
 
tagatttgaaatgcaaattttcacctgttgcgtaaacagcttcttcaaagctttcttgtcgatatcaaacatgtcactcaacacaccaagctccatcatt  2541700
 --------->ARR14(2)
 <---------ARR14(2)
<----------TaMYB80                                                                                 <
->ATHB12                                                                                        <---
>ATHB1                                                                                   --------->HSFB2a(1)
--ICU4                                                                                   <---------HSFC1(2)
-YAB1                        ----------->GT1                                             <---------HSFB2a(1)
--------->TaMYB80       ---------->DOF2 ----------->RAV1(2)                              --------->HSFC1(2)
-ATHB12       --------->AtLEC2     <---------ICU4  ---------->DOF2                   <---------TOE2(3)
 
ggcatatacctattgccatggaaacacaaaagcagtaagaatcaccagggacatcaaagtgaaacagagtaagttgcaaatacaaattaagaaaattcca  2541800
                                               --------->LBD16
                                              --------->ANAC46
                                             --------->HSFB2a(2)
                                             <---------HSFB2a(2)
                                             <---------LBD16
                                        <------ZmHOX2a(2)
                                       --------->AGP1
                                       --------->ARR14(2)
                                       <---------ARR11(3)
                                       --------->ARR11(3)           =============================RAV
                                       <---------ARR14(2)           <-----------RAV1(1)
           --------->ARR14(1)          <-----------ARR10        --------->MYB46(3)
           --------->CCA1(2)         ----------->ARR10 --------->ANAC58
          --------->ARR11(1)     <---------ANAC46      --------->ANAC46    ------>NtERF2
          --------->ARR14(2)     <---------ANAC58      --------->ANAC58    <---------RAP2.6(3)
          <---------ARR14(2)     <---------ANAC58     --------->TOE1(2)   <---------ETT(1)
    ----------->HVH21  --------->ANAC58--------->ARR14(3)      <------ZmHOX2a(2)               -----
----------DOF2         --------->ANAC58<---------ARR14(3)     --------->ARR14(2)             >>>>>>>
------ALFIN1<-------TEIL  ---------->DOF2------>ZmHOX2a(2)    <---------ARR14(2)     <-----------RAV1(2)
 
cacttttgtgacagatacgaattgactagcaaagtagcgtgagatcttcccgcagaacaagcgacgatccactgttgccgacaattcgacaggttagacc  2541900
                      ----------->RAV1(2)
                      --------->ZAT2
                      <---------At4g35610
                   <---------At4g35610
                   --------->At4g35610
               <----------CDC5                              --------->ANAC46
              <---------At4g35610                           --------->LBD16
          --------->GLK1(2)                                --------->LBD16              ------>ZmHOX2a(2)
          --------->ARR14(2)                               <---------LBD16             <------ZmHOX2a(2)
         <---------GLK1(2)                                 <---------HSFB2a(2)     <------NtERF2
     ------>ZmHOX2a(1)--------->At4g35610                  --------->HSFB2a(2)--------->ANAC58
    --------->TOE1(2) <---------ZAT2            <----------ID1        --------->At4g35610<---------HSFB2a(2)
---->AtMYB61  --------->LBD16                   ----------->GT1       <---------At4g35610--------->HSFB2a(2)
>>>>>>>>>>LFY --------->At4g35610            ----------->TGA1--------->LBD16  --------->ANAC58     -
 
actggttcctaagattccgctgagcagctggtctccatagcctcatcgatgacgaaaaactccccggagatggagatgaagaagccagcgatcgcgaaga  2542000
                             --------->TOE1(2)
                          --------->ARR14(2)
                          <---------ARR14(2)
                         <------NtERF2
                        --------->LBD16
                       <---------ANAC46
                      <---------LBD16
                      --------->ATERF1(1)
                      --------->RAP2.3(1)
                      --------->At4g35610
                      <---------At4g35610
                      <------NtERF2
                     <---------DEAR4(2)
                     <---------RAP2.3(1)
                     <---------RRTF1(1)
                     <---------ORA47(2)                                                            -
                     <---------ERF1                                                                <
                     ------>NtERF2                                                                <-
                     <---------RAP2.6(1)                                                          --
                     <---------ATERF1(1)                                                        <---
                    <---------RAP2.3(3)                                                        <----
                    <---------DREB2C(2)                                                        <----
                    <---------RAP2.3(2)                                                        <----
                    <---------RRTF1(2)                                                         <----
    <------NtERF2   <---------ATERF1(2)                                                        <----
   --------->LBD16  --------->ATERF1(2)                                                        -----
  <---------ANAC46  --------->ALFIN1                                                           <----
  --------->DEAR3(1)<---------DEAR3(1)                                                         -----
 <------NtERF2     <---------ABI4(1)                                                           <----
 --------->ATERF1(1)<---------RRTF1(3)                                                      <-------
 <---------LBD16   --------->ATERF1(1)                                             ------>ZmHOX2a(1)
------>NtERF2     <---------ATERF1(1)                                        --------->ZAT6<--------
-------->ANAC46 <-----------RAV1(2)                                          <---------ALFIN1  -----
 
agacgccggagatggagaagcaggcggcggaaactgcgagatgctcatcgaatacaaaacgagttttttgagcttgagtcacactcctaaactctgttac  2542100
   <------NtERF2
  ------>NtERF2
  --------->LBD16
 --------->LBD16
 <---------LBD16
<------NtERF2
<---------LBD16
--------->ATERF1(1)
----->NtERF2
---------RAP2.3(1)
--------DEAR3(1)
------->DEAR3(1)
--------HVH21
-----ANAC58
-----ANAC58       <------NtERF2                                                     --------->YAB1
-----TGA1a       --------->LBD16                                                <---------YAB1
-----bZIP60(2)   ------>NtERF2                                                 ------------>CBF
-----ANAC55(2)   <---------ATERF1(1)                   <---------DAG2      ----------->GT1
---->O2         <---------ATERF1(2)                    <----------DOF2    --------->DAG2
-----O2         --------->DEAR3(1)            <---------ZAT2            ---------->DOF2
---->bZIP60(1)  <---------DEAR3(1)            --------->ZAT2         --------->ANAC58        -------
-----bZIP60(1)  --------->ATERF1(2)           --------->At4g35610    --------->ANAC58       <-------
--MYB52(1)     --------->SPL7                 <---------At4g35610    --------->ANAC46    --------->ICU4
---HVH21    --------->MYB46(3)             --------->MYB46(3)        <----------ID1 ----------->GT1
---->ANAC55(2) --------->ATERF1(1)  *TSS  --------->ANAC46       --------->CCA1(2)<------------CBF
 
gtcgccgggaattgaacggccggcgatagtttgttttctatttccacccagcttagggctttatgaagaaatacgaaaaggttacaattgtaattttcat  2542200
                              <---------YAB1
                            ----------->GT1
                            --------->YAB1
                          <------------CBF
                        <---------YAB1
                       --------->AHL20(2)
                       <---------AHL20(2)
                      --------->YAB1
                   <---------AHL20(2)              <---------YAB1
                  <---------AHL20(2)     --------->YAB1
                  --------->AHL20(2)     <---------ICU4
                  --------->AHL20(1)    --------->ICU4                                             <
                  <---------AHL20(1)    <---------ATHB51                                          <-
                 <---------AHL20(2)     <---------ATHB12          --------->GLK1(2)               --
                 --------->AHL20(2)   --------->WOX13(1)         <---------GLK1(2)        <------ZmHOX2a(2)
             <---------AHL20(2)     ------------>CBF      <------ZmHOX2a(2)              <---------AGP1
-->YAB1      --------->AHL20(2)  --------->ICU4    <---------AHL20(2)             <---------At5g28300
--YAB1   ----------->GT1<---------AHL20(2)    *TSS--------->AHL20(2)          <---------ICU4   -----
 
aaacttctgaacttgtttaaattaattttaattgtaattagcaattatgtctatataatagatcaatagaatctctaagaagaattacagtagatcagat  2542300
                                                                                        --------->ANAC58
                                                                                        --------->ANAC46
                                                                                        --------->bZIP60(2)
                                                                                        --------->ANAC58
                                                                                       <---------LBD16
                          <------ZmHOX2a(2)                                           <---------ALFIN1
              <---------At4g35610                            --------->LBD16  <---------WRKY38(1)
              --------->ZAT2 ---------->DOF2                --------->ANAC55(2)     <------ZmHOX2a(2)
        --------->MYB52(1)--------->CCA1(2)                 <---------O2      <---------WRKY12
        ------>MYB83      ==========================HOX2a_HOX2a   --------->ANAC58 --------->ARR14(2)
        ------>MYB46(1)  --------->ARR11(3)                 --------->O2   <---------DEAR3(2)
   <-----------GT1       <---------ARR11(3)                 <---------ANAC55(2)<---------DOF5.7(2) <
---------AHL20(2)        --------->AGP1                    <---------LBD16<---------DEAR3(1)       <
--------AHL20(1)        --------->GLK1(1)               <-----------HVH21 <---------At1g77200<------NtERF2
------->AHL20(1)        <---------GLK1(1)    <------ZmHOX2a(1)    --------->ANAC58 <---------ARR14(2)
---->CCA1(2)  --------->At4g35610          <---------TOE2(3)<---------ANAC46 ----------->HVH21    <-
 
atatatttaccaatcggagcttcagagagatccaaagagagagattgaggatgtctcacagtcacgggaacgcttcgtcggtgaacgatccacggcagcc  2542400
                                          ------>ZmHOX2a(2)
                                         <------ZmHOX2a(2)
                                         --------->HSFB2a(1)
                                         <----------TaMYB80                               ------>NtERF2
                                         <---------HSFB2a(1)                              --------->LBD16
                                        <---------ARR14(2)                               <---------DEAR3(1)
                                        <-----------ARR10                                --------->ANAC46
                                        --------->GLK1(2)                               <---------LBD16
                                        <---------ARR14(3)                            <---------ARR14(2)
                                        --------->ARR14(3)                           --------->ATERF1(1)
                                    <------NtERF2 --------->WRKY45                  <-----------HVH21
     ---------->DOF2              --------->DEAR3(1)                                ------>NtERF2
   <------NtERF2                  <---------ANAC46--------->WRKY12                  <---------ATERF1(1)
  --------->RAP2.6(2)            <---------LBD16 <---------MYB52(1)      --------->DOF5.7(2) <------
  ------>NtERF2                  <------NtERF2  <-------GAMYB       --------->DEAR3(1)--------->ARR14(2)
 <---------DEAR3(1)              --------->ATERF1(1)            <-------TEIL   ------>ZmHOX2a(1)
 <---------ATERF1(2)            <---------RAP2.3(1)           <---------ARR14(2)  <------NtERF2
 --------->ATERF1(2)    <---------ANAC46--------->ARR11(3)    --------->ARR14(2)<---------DEAR3(1)
<---------LBD16      --------->ANAC58   --------->ARR14(2)  --------->LBD16    <---------LBD16<-----
---------RAP2.3(1)   --------->ANAC58   <---------ARR11(3)<---------LBD16<---------MYB52(1)<--------
---------ATERF1(1)   --------->ANAC46  <------ZmHOX2a(1) --------------------->WRI1<---------DEAR3(1)
--------DEAR3(1)    <---------LBD16--------->LBD16--------->WRKY38(1)   <-------GAMYB<------NtERF2
 
ttcggcggcaaagccttacattccacggcctgtagcgccggaggatcttcccgttgactactccggattcatcgccgttatcctcggcgtctccggcgtt  2542500
                                                                                      <---------ANAC46
                                                                                 <------MYB83
                                                                                 <---------MYB46(3)
                                                                                 <------MYB46(1)
                                                                                 ----------->GT1
                                                                                <---------MYB46(3)
                                                                                --------->MYB111(2)
                                                                                <---------AtMYB61
                                 <-------GAMYB                                  <---------DEAR3(1)
     --------->At5g28300        ------>ZmHOX2a(2)                               --------->MYB46(2)
    ----------->GT1       <---------At4g35610                                   --------->MYB55(2) <
   --------->LBD16     ================HOX2a_HOX2a                             <--------P    ------>ZmHOX2a(2)
  <---------ANAC46     ------>ZmHOX2a(1)                                       <---------MYB55(1)  -
----DOF2     <---------YAB1     <---------MYB46(3)                            <---------MYB52(1)<---
----MYB52(1)<-----------GT1 <---------YAB1                                    <-------GAMYB<--------
-------------WRI1  <-----------GT1               <---------ATHB12          <---------LBD16 ---------
 
atgttcagggtaaattttcatttctcctcttctgatcgttgctctgttagaaatcaattcagtcgtagaaactagtactccggttggtgacttagatcgt  2542600
<- Previous    Next ->

AGI:  At5g07950.1   
Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO64456.1)
Range:  from: 2540285    to: 2542137    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At5g07960.1   
Description:  Identical to UPF0139 protein At5g07960 [Arabidopsis Thaliana] (GB:Q9SD88); similar to unknown [Populus trichocarpa] (GB:ABK93624.1); contains InterPro domain Protein of unknown function UPF0139 (InterPro:IPR005351)
Range:  from: 2542247    to: 2543460    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version