Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
<---------
ANAC58
<---------
ANAC58
--------->
GLK1(2)
<---------
ARR14(2)
<---------
GATA12
--------->
GATA12
--------->
ARR14(2)
<------
NtERF2
--------->
ATERF1(1)
------>
NtERF2
--------->
RAP2.3(3)
--------->
RAP2.3(2)
<----------
DOF2
--------->
DEAR3(1)
<---------
DOF5.7(1)
--------->
RAP2.3(1)
<---------
ZAT2
--------->
ATERF1(1)
<---------
At4g35610
--------->
RRTF1(1)
--------->
ZAT2
--------->
ERF1
--------->
At4g35610
<---------
ATERF1(1)
----------->
RAV1(2)
<------
NtERF2
--------->
LBD16
<---------
At4g35610
--------->
DAG2
--------->
ARR14(2)
--------->
At4g35610
--------->
DOF5.7(1)
--------->
ARR11(2)
--------->
ATERF1(1)
---------->
DOF2
<---------
ARR14(2)
<---------
YAB5
<-
--------->
DAG2
<---------
ARR11(2)
--------->
GLK1(2)
--------->
ZAT2
--------->
DOF5.7(1)
--------->
ARR11(2)
<---------
GLK1(2)
--------->
ARR14(2)
<-
---------->
DOF2
<---------
ALFIN1
<---------
RAP2.3(1)
<---------
ARR11(2)
----
--------->
DOF5.7(1)
<---------
ARR11(2)
--------->
KAN1
--------->
LBD16
<---------
ZAT2
-->
ANAC55(2)
----------->
RAV1(1)
----------->
RAV1(1)
<---------
LBD16
==============
---
HSFB2a(2)
--------->
ANAC58
--------->
ANAC46
--------->
At4g35610
<---------
ARR14(2)
-------
-->
HSFB2a(2)
--------->
ANAC46
--------->
SPL7(1)
--------->
ZAT2
--------->
LBD16
<-----------
RAV1(2)
---
ANAC55(2)
--------->
ANAC58
<---------
LBD16
<---------
ZAT2
--------->
HSFB2a(2)
================
aacaaaaaggcagctttctcgccacagttccagcatccggcgccagattccgagcagaaaactctcccggagaatcggagtcgtccctcagctgaagaat
1961000
<---------
HSFB2a(2)
--------->
ARR14(1)
--------->
CCA1(2)
<------
MYB83
--------->
GLK1(2)
<------
MYB46(1)
<---------
GATA12
--------->
MYB59
<---------
RVE1(2)
--------->
ARR11(2)
--------->
GATA12
<---------
ARR11(2)
--------->
ARR11(1)
<---------
TOE2(3)
--------->
ARR11(2)
--------->
At4g35610
<---------
ARR14(2)
<-------
GAMYB
--------->
ARR14(2)
<---------
WOX13(2)
<---------
GLK1(2)
--------->
WOX13(2)
----------->
ARR10
<---------
WOX13(1)
<---------
MYB46(3)
----------
RAV1(1)
--------->
ATHB12
--------->
MYB52(2)
--------
REM1(1)
<---------
YAB1
--------->
MYB46(2)
----->
YAB1
<-------
TEIL
<---------
YAB5
<---------
WOX13(2)
<---------
TOE1(3)
==========
RAV
<---------
ANAC58
<---------
ANAC46
<---------
MYB52(1)
<---------
ANAC46
<----
-->
YAB1
--------->
KAN1
<---------
ANAC58
<-----------
HVH21
<--------
P
<------
ZmHOX2a(1)
--------->
DOF5.7(1)
==========
RAV
<---------
WOX13(2)
<---------
YAB5
<---------
MYB46(3)
<-------
TEIL
--------
gatgttgcagagattcgcgaggcaattgggtttgtgattgaatcgtcgcgagtgaattacactggttagttgaaggataggtccgtctaataagggtgga
1961100
==============================
HOX2a_HOX2a
===============================
HOX2a_HOX2a
<-----------
RAV1(2)
<------
ZmHOX2a(2)
--------->
GATA12
--------->
YAB5
<---------
ARR11(2)
<---------
ANAC46
<---------
GATA12
<------
ZmHOX2a(2)
--------->
MYB46(3)
--------->
ARR11(2)
<---------
RVE1(2)
------>
NtERF2
--------->
ANAC55(2)
<---------
GATA12
--------->
RAP2.6(2)
<---------
ANAC46
<---------
ARR11(3)
--------->
ANAC46
<---------
ANAC55(2)
--------->
GATA12
--------->
ANAC58
<---------
LBD16
<---------
LBD16
<---------
ARR11(2)
--------->
ANAC58
<---------
WOX13(2)
<---------
RVE1(2)
<---------
CCA1(2)
-----
RVE1(2)
--------->
WOX13(2)
<---------
ARR14(2)
------>
ZmHOX2a(2)
->
ALFIN1
--------->
AtMYB61
<---------
ICU4
<------
ZmHOX2a(1)
*
TSS
--------->
ARR11(3)
-------
gatggaagccaccatcgtcttcgttttcttcat
tacgggatcaggagaggttttggctc
tggagagatcgtcgtgtatcgattactactactacttgtcc
1961200
<-----------
GT1
<---------
AHL20(3)
<---------
AHL12(2)
--------->
AHL12(2)
<---------
DOF5.7(1)
--------->
AHL20(3)
------>
NtERF2
--
<---------
CCA1(1)
<---------
ARR14(2)
---
<---------
RVE1(1)
--------->
ARR14(2)
---
<---------
ARR14(2)
--------->
KAN1
<--
<---------
ARR11(3)
----------->
ARR10
-----
<---------
ANAC46
--------->
ARR14(2)
<---------
KAN1
<----
<------------
CBF
--------->
AtMYB61
<---------
SPL7(1)
<---------
At4g35610
<---------
WOX13(2)
----------------->
AGL2
--------------->
AtSPL3
--------->
DEAR3(1)
<---------
KAN1
<-----------
GT1
--------->
ARR11(3)
----------->
GT1
------
--->
ID1
----------->
GT1
<---------
ZAT6
<---------
RVE1(2)
----------------->
AGL1
<---------
KAN1
ctaatcgaaccagaccgagtaaattggtttagtgttacaagaccaaaaccagatatttatcttatcgtaccagaccgagtaaattcgccgcttatcgcct
1961300
----------->
GT1
<---------
DEAR3(1)
--------->
SPL7(1)
--------->
LBD16
--------->
LBD16
------->
GAMYB
----------->
HVH21
<---------
LBD16
<---------
SPL7(1)
-------->
P
<---------
LBD16
<---------
WRKY38(1)
---->
NtERF2
<---------
ARR11(2)
<-----------
HVH21
------>
DEAR3(1)
--------->
ARR11(3)
<---------
WRKY12
-------->
HVH21
<---------
ARR11(3)
--------->
WRKY18(1)
<---------
ANAC58
-------
ETT(1)
<---------
KAN1
--------->
LBD16
<---------
ANAC58
->
NtERF2
--------->
At5g28300
<---------
LBD16
<---------
TOE1(3)
------------>
CBF
-----
ATERF1(1)
--------->
YAB1
--------->
MYB52(1)
<---------
TOE2(3)
------>
ZmHOX2a(1)
--->
DEAR3(1)
<---------
GATA12
<-----------
HVH21
<-----------
HVH21
<---------
ANAC46
<---------
YAB1
-
ccgacccggacggtgaatcggaataccttctgggttaccgggtcaaccgggtcactgggtaaggtttcgttttcttctcctccaattctcatttcatctt
1961400
<---------
ICU4
<---------
YAB5
<---------
ATHB12
<---------
GLK1(1)
--------->
GLK1(1)
------
<---------
YAB5
<-----
<-----------
HVH21
<----------
DOF2
--------->
HSFC1(2)
<---------
HSFC1(2)
<-----
<---------
HSFC1(2)
<XXXXXXXXXXXXXXXXXXXX
MIR851-3P
-------
*
TSS
<---------
TOE2(3)
<---------
At4g35610
--------->
KAN1
----------->
RAV1(2)
--------->
YAB5
<---------
HSFB2a(1)
<---------
ANAC58
--------->
HSFB2a(1)
<--------
--------->
GLK1(1)
--------->
HSFB2a(1)
<---------
ANAC58
<---------
HSFB2a(1)
---------
<---------
GLK1(1)
<------
ZmHOX2a(1)
--------->
ICU4
<---------
MYB46(3)
------>
ZmHOX2a(1)
-------->
GATA12
<---------
TOE1(3)
--------->
At4g35610
<----------
DOF2
--------->
HSFC1(2)
<-------
TEIL
cagatttcttc
atcgattagggtttaggaaccttgtcatcggaaatcatttcttgtctttgtttgttattcgaagcttctcctgcttatttgatacatat
1961500
--------->
YAB5
--------->
KAN1
--------->
ARR11(2)
<---------
ARR11(2)
--------->
ANAC46
<---------
AtLEC2
------>
ZmHOX2a(2)
<---------
REM1(2)
--------->
ARR11(2)
--------->
GATA12
--------->
KAN1
--------->
MYB46(3)
--------->
GATA12
<---------
ARR14(2)
--------->
ARR14(2)
<---------
ARR11(2)
--------->
ARR11(2)
<---------
ARR14(2)
<---------
GATA12
<---------
GATA12
--->
ARR14(2)
<---------------
AGL15
<---------
ARR14(2)
<---------
ARR11(2)
----
GLK1(2)
<-----------------
AGL1
--------->
ARR14(2)
--------->
ARR14(2)
----
ARR14(2)
--------------->
AGL15
<-----------
HVH21
--------->
MYB52(1)
<
-->
KAN1
--------->
ARR11(2)
<------
ZmHOX2a(1)
--------->
At4g35610
<------
ZmHOX2a(2)
-
ANAC55(2)
--------->
ZAT6
<---------
TOE1(3)
--------->
DEAR3(1)
<------
ZmHOX2a(2)
>
ANAC55(2)
<-----------------
AGL3
<---------
TOE2(3)
<----------
DOF2
----------->
HVH21
<--
tctctcttccagttactctac
atggaaccattcgttgttaaggagaacatcgtcgcatccgcttcttcgccgatgaagaagcgacggatcgatcacactg
1961600
<---------
ARR11(2)
--------->
ARR14(2)
--------->
ARR11(2)
<---------
ARR14(2)
----------------------->
TaNAC69(2)
--------->
CCA1(2)
<---------
MYB46(3)
--------->
ARR11(1)
<---------
DOF5.7(2)
----------->
HVH21
--------->
ARR14(2)
<------
MYB46(1)
--------->
At4g35610
<---------
ARR11(2)
<------
MYB83
--------->
ZAT2
<---------
ARR14(2)
--------->
MYB59
<---------
ZAT2
--------->
ARR11(2)
<------
NtERF2
---
<---------
At4g35610
--------->
ZAT6
<---------
DOF5.7(2)
--------->
LBD16
======
----------->
RAV1(2)
<---------
TOE2(3)
<---------
ARR11(2)
<---------
ANAC46
------
-----------
RAV1(2)
<-----------
GT1
<---------
MYB46(3)
<---------
LBD16
--------->
YAB5
<
---------
HVH21
<---------
KAN1
<---------
DEAR3(1)
------->
TEIL
--------->
MYB46(2)
----
agtcagctgatggttctgcgattaacgcttctaactctagtagcatcggtggtaacgatacggtgatgaacatggcggagtttggtaacgacaactccaa
1961700
<---------
AHL12(1)
<---------
RVE1(1)
<---------
CCA1(1)
<------
ZmHOX2a(1)
<---------
ARR11(3)
<-----------
RAV1(2)
--------->
ARR11(3)
--------->
YAB1
------->
TEIL
<---------
RVE1(2)
<
------>
WOX13(1)
<---------
CCA1(2)
<---------
TOE2(3)
-
============
RAV
<---------
ANAC46
--------->
ATHB12
---------
----->
RAV1(1)
<---------
ANAC55(2)
--------------->
AGL15
<<<<<<<<<
TBF1
<-
---------
ATHB12
----------->
GT1
<---------
ANAC58
<-----------
RAV1(1)
<<<<<<<<<
TBF1
<--------
----->
MYB46(3)
<---------
TOE2(3)
<---------
ANAC58
<---------
MYB46(3)
<-----------
GT1
<---------
MYB52(1)
caatcaggagtctcaacaag
gttacatatactacttccttgtatctcaattctagttgttgcctcattgagattttttcttcttcttcgttgttagctag
1961800
<---------
ICU4
-------->
ATHB1
----------->
GT1
--------->
ATHB12
--------->
DAG2
--------->
WOX13(2)
---------->
DOF2
--------
<---------
YAB1
--------->
YAB5
------->
GAMYB
--------
---------
AHL12(1)
--------->
YAB1
--------->
ANAC58
--------->
ATHB12
-------->
AHL12(1)
<---------
YAB5
--------->
ANAC58
--------->
DOF5.7(1)
>
At4g35610
<---------
ATHB12
<---------
HSFB2a(2)
---------->
DOF2
--------
AHL12(2)
<---------
ATHB12
--------->
HSFB2a(2)
<------
ZmHOX2a(1)
-
-
STY1(2)
--------->
ZAT6
<----------
DOF2
--------->
MYB52(1)
<----------
ID1
<---
aaattttcatttacactaatcaaatcattgttctgtttcag
tttgcactttcttcaagaagccaacgaaaagtaaaaacataaggaaaagaaccattgac
1961900
Previous
Next
AGI:
At5g06410.1
Description:
DNAJ heat shock N-terminal domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO39912.1); contains InterPro domain Heat shock cognate protein B, C-terminal oligomerisation; (InterPro:IPR009073); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623); contains InterPro domain Co-chaperone Hsc20; (InterPro:IPR004640)
Range:
from: 1959537
to: 1961159
Orientation: Reverse
Links:
TAIR
MIPS
AIP
AGI:
At5g06420.1
Description:
zinc finger (CCCH-type/C3HC4-type RING finger) family protein. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G01350.1); similar to Os02g0301000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046620.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64331.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)
Range:
from: 1961412
to: 1963039
Orientation: Forward
Links:
TAIR
MIPS
AIP
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version