Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 <---------ANAC58                                               <---------ANAC58                                            --------->GLK1(2)                                           <---------ARR14(2)                                           <---------GATA12                                           --------->GATA12                                           --------->ARR14(2)                                       <------NtERF2                                       --------->ATERF1(1)                                      ------>NtERF2                                     --------->RAP2.3(3)                                     --------->RAP2.3(2)           <----------DOF2           --------->DEAR3(1)          <---------DOF5.7(1)       --------->RAP2.3(1)         <---------ZAT2             --------->ATERF1(1)         <---------At4g35610        --------->RRTF1(1)         --------->ZAT2             --------->ERF1         --------->At4g35610       <---------ATERF1(1)                                 ----------->RAV1(2)         <------NtERF2             --------->LBD16                                     <---------At4g35610    --------->DAG2             --------->ARR14(2)                                      --------->At4g35610    --------->DOF5.7(1)        --------->ARR11(2)                            --------->ATERF1(1)   ---------->DOF2             <---------ARR14(2)                            <---------YAB5        <-   --------->DAG2              <---------ARR11(2)                     --------->GLK1(2)--------->ZAT2   --------->DOF5.7(1)  --------->ARR11(2) <---------GLK1(2)          --------->ARR14(2)           <-  ---------->DOF2  <---------ALFIN1<---------RAP2.3(1)                <---------ARR11(2)         ----  --------->DOF5.7(1)   <---------ARR11(2)--------->KAN1         --------->LBD16       <---------ZAT2 -->ANAC55(2)      ----------->RAV1(1)----------->RAV1(1)      <---------LBD16         ============== ---HSFB2a(2)   --------->ANAC58  --------->ANAC46--------->At4g35610 <---------ARR14(2)      ------- -->HSFB2a(2)   --------->ANAC46 --------->SPL7(1)--------->ZAT2--------->LBD16      <-----------RAV1(2) ---ANAC55(2)   --------->ANAC58 <---------LBD16  <---------ZAT2--------->HSFB2a(2)  ================   aacaaaaaggcagctttctcgccacagttccagcatccggcgccagattccgagcagaaaactctcccggagaatcggagtcgtccctcagctgaagaat  1961000             <---------HSFB2a(2)          --------->ARR14(1)          --------->CCA1(2)                                                 <------MYB83          --------->GLK1(2)                                                 <------MYB46(1)         <---------GATA12                                                  --------->MYB59         <---------RVE1(2)                                               --------->ARR11(2)         --------->GATA12                                                <---------ARR11(2)         --------->ARR11(1)                                           <---------TOE2(3)         --------->ARR11(2)                                      --------->At4g35610         <---------ARR14(2)                                      <-------GAMYB         --------->ARR14(2)                                      <---------WOX13(2)         <---------GLK1(2)                                       --------->WOX13(2)       ----------->ARR10          <---------WOX13(1)            <---------MYB46(3) ----------RAV1(1)              --------->ATHB12                --------->MYB52(2) --------REM1(1)               <---------YAB1                   --------->MYB46(2) ----->YAB1<-------TEIL        <---------YAB5       <---------WOX13(2)<---------TOE1(3) ==========RAV           <---------ANAC58    <---------ANAC46 <---------MYB52(1)<---------ANAC46<---- -->YAB1--------->KAN1   <---------ANAC58<-----------HVH21    <--------P<------ZmHOX2a(1)--------->DOF5.7(1) ==========RAV       <---------WOX13(2)<---------YAB5       <---------MYB46(3) <-------TEIL  --------   gatgttgcagagattcgcgaggcaattgggtttgtgattgaatcgtcgcgagtgaattacactggttagttgaaggataggtccgtctaataagggtgga  1961100                                         ==============================HOX2a_HOX2a                                         ===============================HOX2a_HOX2a                                      <-----------RAV1(2)                                     <------ZmHOX2a(2)                                    --------->GATA12                        --------->YAB5                                    <---------ARR11(2)              <---------ANAC46                                    <---------GATA12            <------ZmHOX2a(2)        --------->MYB46(3)          --------->ARR11(2)         <---------RVE1(2)       ------>NtERF2            --------->ANAC55(2)            <---------GATA12      --------->RAP2.6(2)       <---------ANAC46               <---------ARR11(3)   --------->ANAC46             <---------ANAC55(2)            --------->GATA12   --------->ANAC58            <---------LBD16         <---------LBD16   <---------ARR11(2)   --------->ANAC58         <---------WOX13(2)       <---------RVE1(2)  <---------CCA1(2) -----RVE1(2)               --------->WOX13(2) <---------ARR14(2)------>ZmHOX2a(2) ->ALFIN1--------->AtMYB61 <---------ICU4<------ZmHOX2a(1) *TSS--------->ARR11(3)             -------   gatggaagccaccatcgtcttcgttttcttcattacgggatcaggagaggttttggctctggagagatcgtcgtgtatcgattactactactacttgtcc  1961200                                                      <-----------GT1                                                    <---------AHL20(3)                                                    <---------AHL12(2)                                                    --------->AHL12(2)                 <---------DOF5.7(1)                                                    --------->AHL20(3)                ------>NtERF2--                                                  <---------CCA1(1)            <---------ARR14(2) ---                                                  <---------RVE1(1)            --------->ARR14(2) ---                                                 <---------ARR14(2)           --------->KAN1      <--                                                 <---------ARR11(3)          ----------->ARR10  -----                           <---------ANAC46      --------->ARR14(2)         <---------KAN1      <----                   <------------CBF     --------->AtMYB61      <---------SPL7(1)      <---------At4g35610                   <---------WOX13(2)  ----------------->AGL2--------------->AtSPL3  --------->DEAR3(1)                <---------KAN1  <-----------GT1  --------->ARR11(3)       ----------->GT1      ------ --->ID1      ----------->GT1<---------ZAT6      <---------RVE1(2)----------------->AGL1 <---------KAN1   ctaatcgaaccagaccgagtaaattggtttagtgttacaagaccaaaaccagatatttatcttatcgtaccagaccgagtaaattcgccgcttatcgcct  1961300        ----------->GT1       <---------DEAR3(1)      --------->SPL7(1)                      --------->LBD16    --------->LBD16                         ------->GAMYB    ----------->HVH21                      <---------LBD16    <---------SPL7(1)                     -------->P  <---------LBD16                       <---------WRKY38(1) ---->NtERF2 <---------ARR11(2)       <-----------HVH21 ------>DEAR3(1)     --------->ARR11(3) <---------WRKY12 -------->HVH21      <---------ARR11(3)--------->WRKY18(1)      <---------ANAC58 -------ETT(1)      <---------KAN1  --------->LBD16             <---------ANAC58 ->NtERF2--------->At5g28300      <---------LBD16         <---------TOE1(3)   ------------>CBF -----ATERF1(1)--------->YAB1    --------->MYB52(1)       <---------TOE2(3)  ------>ZmHOX2a(1) --->DEAR3(1)<---------GATA12 <-----------HVH21<-----------HVH21<---------ANAC46     <---------YAB1 -   ccgacccggacggtgaatcggaataccttctgggttaccgggtcaaccgggtcactgggtaaggtttcgttttcttctcctccaattctcatttcatctt  1961400                                           <---------ICU4                                          <---------YAB5                                          <---------ATHB12                                        <---------GLK1(1)                                        --------->GLK1(1)                                      ------                                <---------YAB5                                                 <-----                               <-----------HVH21                                  <----------DOF2                           --------->HSFC1(2)                          <---------HSFC1(2)      <-----                           <---------HSFC1(2)        <XXXXXXXXXXXXXXXXXXXXMIR851-3P           -------            *TSS<---------TOE2(3)  <---------At4g35610         --------->KAN1----------->RAV1(2)           --------->YAB5  <---------HSFB2a(1)  <---------ANAC58       --------->HSFB2a(1)  <-------- --------->GLK1(1)         --------->HSFB2a(1)  <---------ANAC58       <---------HSFB2a(1)  --------- <---------GLK1(1)      <------ZmHOX2a(1) --------->ICU4    <---------MYB46(3) ------>ZmHOX2a(1) -------->GATA12<---------TOE1(3)  --------->At4g35610<----------DOF2  --------->HSFC1(2)  <-------TEIL   cagatttcttcatcgattagggtttaggaaccttgtcatcggaaatcatttcttgtctttgtttgttattcgaagcttctcctgcttatttgatacatat  1961500                         --------->YAB5                         --------->KAN1                      --------->ARR11(2)                      <---------ARR11(2)                   --------->ANAC46                 <---------AtLEC2                                                     ------>ZmHOX2a(2)                <---------REM1(2)                    --------->ARR11(2)             --------->GATA12          --------->KAN1--------->MYB46(3)           --------->GATA12               <---------ARR14(2)         --------->ARR14(2)                          <---------ARR11(2)             --------->ARR11(2)         <---------ARR14(2)                          <---------GATA12               <---------GATA12 --->ARR14(2)<---------------AGL15                   <---------ARR14(2)             <---------ARR11(2) ----GLK1(2)<-----------------AGL1                   --------->ARR14(2)             --------->ARR14(2) ----ARR14(2)--------------->AGL15              <-----------HVH21              --------->MYB52(1)   < -->KAN1 --------->ARR11(2)            <------ZmHOX2a(1)            --------->At4g35610  <------ZmHOX2a(2) -ANAC55(2) --------->ZAT6           <---------TOE1(3)             --------->DEAR3(1)<------ZmHOX2a(2) >ANAC55(2) <-----------------AGL3   <---------TOE2(3)     <----------DOF2    ----------->HVH21   <--   tctctcttccagttactctacatggaaccattcgttgttaaggagaacatcgtcgcatccgcttcttcgccgatgaagaagcgacggatcgatcacactg  1961600          <---------ARR11(2)          --------->ARR14(2)          --------->ARR11(2)          <---------ARR14(2)         ----------------------->TaNAC69(2)            --------->CCA1(2)        <---------MYB46(3)                            --------->ARR11(1)           <---------DOF5.7(2)    ----------->HVH21                                 --------->ARR14(2)        <------MYB46(1)  --------->At4g35610                                 <---------ARR11(2)        <------MYB83  --------->ZAT2                                      <---------ARR14(2)       --------->MYB59  <---------ZAT2                                      --------->ARR11(2)  <------NtERF2           ---  <---------At4g35610          --------->ZAT6     <---------DOF5.7(2)    --------->LBD16       ======  ----------->RAV1(2)<---------TOE2(3)           <---------ARR11(2)     <---------ANAC46       ------ -----------RAV1(2) <-----------GT1            <---------MYB46(3)      <---------LBD16--------->YAB5< ---------HVH21    <---------KAN1          <---------DEAR3(1)     ------->TEIL --------->MYB46(2)----   agtcagctgatggttctgcgattaacgcttctaactctagtagcatcggtggtaacgatacggtgatgaacatggcggagtttggtaacgacaactccaa  1961700                                                                      <---------AHL12(1)                                                                     <---------RVE1(1)                                                                     <---------CCA1(1)    <------ZmHOX2a(1)                                               <---------ARR11(3) <-----------RAV1(2)                                                --------->ARR11(3) --------->YAB1                        ------->TEIL                 <---------RVE1(2)               < ------>WOX13(1)                      <---------CCA1(2)           <---------TOE2(3)                 - ============RAV                  <---------ANAC46           --------->ATHB12               --------- ----->RAV1(1)       <---------ANAC55(2)                   --------------->AGL15<<<<<<<<<TBF1      <- ---------ATHB12----------->GT1   <---------ANAC58   <-----------RAV1(1)     <<<<<<<<<TBF1  <-------- ----->MYB46(3)<---------TOE2(3)  <---------ANAC58   <---------MYB46(3)  <-----------GT1 <---------MYB52(1)   caatcaggagtctcaacaaggttacatatactacttccttgtatctcaattctagttgttgcctcattgagattttttcttcttcttcgttgttagctag  1961800                      <---------ICU4                      -------->ATHB1                               ----------->GT1                      --------->ATHB12                            --------->DAG2     --------->WOX13(2)                                          ---------->DOF2             --------   <---------YAB1     --------->YAB5                           ------->GAMYB                 -------- ---------AHL12(1)    --------->YAB1                    --------->ANAC58                  --------->ATHB12 -------->AHL12(1)   <---------YAB5                     --------->ANAC58             --------->DOF5.7(1) >At4g35610     <---------ATHB12                    <---------HSFB2a(2)            ---------->DOF2 --------AHL12(2)    <---------ATHB12               --------->HSFB2a(2)          <------ZmHOX2a(1)  - -STY1(2) --------->ZAT6                     <----------DOF2--------->MYB52(1)  <----------ID1   <---   aaattttcatttacactaatcaaatcattgttctgtttcagtttgcactttcttcaagaagccaacgaaaagtaaaaacataaggaaaagaaccattgac  1961900  Previous    Next  AGI:  At5g06410.1    Description:  DNAJ heat shock N-terminal domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO39912.1); contains InterPro domain Heat shock cognate protein B, C-terminal oligomerisation; (InterPro:IPR009073); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623); contains InterPro domain Co-chaperone Hsc20; (InterPro:IPR004640) Range:  from: 1959537    to: 1961159    Orientation: Reverse Links:  TAIR  MIPS  AIP    AGI:  At5g06420.1    Description:  zinc finger (CCCH-type/C3HC4-type RING finger) family protein. similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G01350.1); similar to Os02g0301000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046620.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64331.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 1961412    to: 1963039    Orientation: Forward Links:  TAIR  MIPS  AIP      Please cite the corresponding publications when using AthaMap.
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