Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       --------->bZIP60(2)                                     --------->O2                                     --------->ANAC58                                     --------->ANAC58                                     --------->ANAC46                                     --------->TGA1a                                     <---------TGA1a                                     <---------O2                                    ------>NtERF2                               <---------ETT(1)                                   <---------ALFIN1                             <----------ID1                                 --------->LBD16                             --------->GLK1(2)                                 ------>NtERF2                              <---------GLK1(2)                ------>ZmHOX2a(1)<-----------HVH21               ------>ZmHOX2a(2)           <------------------------ANAC81  <---------ARR11(3)  <------ZmHOX2a(2)       <---------GLK1(2)        --------->ANAC58    <------ZmHOX2a(1)      <---------HSFB2a(1)      -      <---------At4g35610       --------->ANAC46    ===================HOX2a_HOX2a           <------NtERF2      <---------ZAT2            --------->ANAC58    ====================HOX2a_HOX2a ---------->DOF2--  <---------ALFIN1             <---------LBD16  <---------MYB52(1)         --------->HSFB2a(1)    ---   tgctccacagcttctctcctcttctgttccttctccgccacgtcaatatcgttaggagagagagcgatctcttcgaaagattccgacaaagacgcgtcga  1764300                                                                                                    -                                                                                                  <--                                                                                                <----                                                                                             <-------                                                                                            =========                                                                                            <-------GAMYB                                                                                            ---------                                                                                           --------->MYB55(2)                                                                                           <---------MYB46(3)                                                                                           <---------ATERF1(1)                                                                                           <---------DEAR3(2)                                                                                          <---------DEAR3(1)                                       ====================HOX2a_HOX2a                  ------------>AtMYB77                                   ----------->HVH21                                    <---------RAP2.3(1)               <-------MYC2      <---------ANAC58                                       ------>NtERF2               <-------MYC3      <---------ANAC46                                       <---------ORA47(2)               ------->MYC3      <---------ANAC58                                      <---------RAP2.3(3)               <-------PIF5      <---------ANAC55(2)                                 <-----------HVH21               ------->MYC2   --------->ARR14(2)                                    <---------O2<----      ------>NtERF2           <---------ARR14(2)                                    --------->O2<----  --------->ANAC58          <---------MYB46(3)                                     <---------HSFC1(2)  --------->ANAC58       ------------>AtMYB77                          ------>ZmHOX2a(2)<---------ERF1  --------->ANAC46      --------->ETT(2)             <---------TOE1(2)<------ZmHOX2a(2)<---------DREB2C(2) <---------LBD16        <---------ETT(2)            =========================HOX2a_HOX2a<---------DEAR3(2) -------->MYB52(1)    <-----------HVH21------>ZmHOX2a(2)             --------->ARR14(2)<---------At1g77200 --------->HVH21 --------->ZAT2  --------->ANAC55(2)------>ZmHOX2a(1)<---------ARR14(2)<---------DEAR3(1) --->ZmHOX2a(2)------->PIF5 <---------DEAR3(2)      ==========================HOX2a_HOX2a<------NtERF2   tctcacggagcctagcacgagctctgtcgacggtttcgtgatcgggtcttggtcctagggttcgaagaacagatcgggtctgagaaacgtcggcggttgc  1764400                                                                                                   <-                                                                                                   --                                                                                                 <---                                                                                                 <---                                                                                                <----                                                                                              <------          <------NtERF2                  --------->At4g35610                             <---------ARR14(2) -------->MYB52(2)                       <---------At4g35610                        <---------ARR14(2) -------MYB52(1)                  --------->ALFIN1                                  --------->ARR14(2) -----ANAC58                    <---------TGA1a                                   <---------HSFB2a(1) --MYB52(1)                     <---------O2                                      <---------HSFC1(2) =========================================MYC_MYB                                 --------->HSFC1(2) >ATERF1(1)            <------ZmHOX2a(1) ----------->RAV1(2)            <---------YAB1   --------->ARR14(2) -----ANAC46 --------->ANAC58   --------->TGA1a                         --------->ICU4------>ZmHOX2a(2) -----ANAC58 --------->ANAC58   --------->O2                     <---------MYB46(3)<------ZmHOX2a(1)<   gttagtcatggaggcaagaacatcaggatgagccaagtgaggcatctgagtcactatctcgatagagtggtttgatgatgaagaaggatcggatttggat  1764500       --------->ANAC58       --------->ANAC58     <---------ANAC58               --------->At5g28300     <---------ANAC58               <------NtERF2    <------NtERF2                  <---------MYB46(3)                                         -------   <---------MYB46(3)             <---------DEAR3(1)                                          <------ --------AtMYB61                  <---------DREB2C(2)     --------->ANAC58              <---------ZAT6 ------->ALFIN1                   <---------ANAC46        --------->ANAC58             <---------TOE1(3) ---MYB83                   <---------ARR14(2)            --------->ANAC46          ----------------- ---MYB46(1)                --------->ARR14(2)        <------ZmHOX2a(2)          --------->ARR11(3) -----AtMYB61              ==================================HOX2a_HOX2a         <---------ARR11(3) ---AtLEC2                 <------ZmHOX2a(1)         <---------ARR14(2)        --------->HSFB2a(1) <- ---------MYB46(3)   <------ZmHOX2a(1)               --------->ARR14(2)        <---------HSFB2a(1)---   ggtggtggctcgacatcggaagaggaagaggatttggcggtgaatgaagggagacgatccaagacataagagagaacagggaagttcttagggttaagct  1764600                                                                                --------->MYB52(2)                                                                                <---------ANAC58   <------NtERF2                                                                <---------ANAC58  ------>NtERF2                                                                 <---------ANAC46 --------->DEAR3(1)                                                            <-------TEIL <---------ETT(2)                                          >>>>>>>>>TBF1       *TSS               --- -->At4g35610                                           >>>>>>>>>TBF1   --------->ATHB12         ---- ---At4g35610  --------->At4g35610                   >>>>>>>>>TBF1     <---------YAB1            <--- ---->WRI1     <---------ZAT2  --------->ATHB12   >>>>>>>>>TBF1        --------->ICU4            <--- --------ATERF1(1)          --------->CCA1(2) <------ZmHOX2a(1)        <---------ATHB51         ----- ------>DEAR3(1) <----------DOF2            <---------TOE2(3) >>>>>>>>>TBF1 <---------MYB46(3)------>ZmHOX2a(1)   ccgtcgccattgttgggagcttgatggaagagacgattgggagattgaggaagaagaagaagaagaagaagcgattattggttcgtgtctcatgtccttc  1764700                                                   <-------MYC3                                                   ------->PIF5                                                   ------->MYC3                                                   ------->MYC4                                                   <-------MYC4                                                   ------->MYC2                                                   <-------MYC2                                                   <-------PIF5                                                  --------->TGA1a                                                  --------->O2                                                  --------->ANAC55(2)                                                  --------->ANAC46                                                  <---------TGA1a                                       --------->TOE2(3)                                       <-------GAMYB                                       --------->TOE1(3)                                     <------ZmHOX2a(2)                                    <---------ARR11(3)                                    --------->ARR11(3)                                ============================bZIP_DOF            XXXXXXXXXXXXXXXXXXXX>MIR859=====================MYC_MYB            ------------>CBF ------>LBD16             ==================================bZIP_DOF       <---------O2 ----->ANAC55(2)          ---------->DOF2 --------->AHL20(2)               --------->O2 ------ANAC58         --------->ANAC58----------->GT1                 --------->ANAC46             -- ------ANAC58  <------------CBF ---------->DOF2   <---------O2        --------->ANAC58        ------- ---------->AtSPL3    --------->ANAC58------>ZmHOX2a(2)               --------->ANAC58     ------>ZmHOX2a(1)   cgtactattagcatctctattgccaagtcaaagtcaaagatcgttaaattacacgtggttttgtattaatacaagacaagtgtcaatgttatcctacaaa  1764800                                               <---------------AGL15                                               --------------->AGL15                                            <-----------GT1                                       <---------AHL20(2)                                       <--------ATHB1                                       <---------ICU4                                       --------->YAB1                                       <---------AHL20(1)             <---------TOE1(3)                                       --------->AHL20(2)             <---------TOE2(3)                                      <---------YAB1            <---------AHL20(2)        <---------ATHB12              --------->ICU4            --------->AHL20(2) --------->GT1                      --------->YAB1              --------->AHL20(1) --->DOF2<---------ICU4            --------->AHL20(2)          --------->AHL20(2)   gaagaaaaaaatcattctaaaaacacttcttacacaaataataattttacacttagtagaaacaaattaattaaggttttagaatagataagataaccaa  1764900                                                                                   ----------------->AGL1                                                                                   <-----------------AGL3                                                                                   ----------------->AGL3                     <---------TOE1(3)                                   >>>>>>>>>ARR1                     <---------TOE2(3)                                   >>>>>>>>>ARR2               --------->AHL20(2)          <---------YAB1              <---------TOE2(3)               <---------AHL20(2) ----------->GT1                      <---------YAB1             --------->TOE2(3)   --------->DAG2             ---------->ID1       ------>NtERF2             <----------DOF2    ---------->DOF2  ---------->ID1        <---------TOE1(3)     --------   gaagtttagagaaaactttaattaaggtttttgaaaaagtgaataatttttgttgttattttgtcttcattttaagattgtgaggcccaatattggtgac  1765000                         ------>ZmHOX2a(2)                       <---------ARR11(3)            <---------HSFB2a(2)                       --------->ARR11(3)            --------->HSFB2a(2)                      --------->YAB1              <----------DOF2                    <---------KAN4(2)          <---------YAB1        --------->DAG2             <---------ANAC58               <---------YAB1          ---------->DOF2 --->HVH21   <---------ANAC58             ----------->GT1  ----------->GT1                         --   acaaatgttttatgggcttgagaatgatcttagggaaaactatattgttattcttttggaaatgaaaaaaaaaagctcatttttgagactatgcaatgga  1765100                                                                                       --------->ICU4                                                                                       <---------YAB1                           <---------ICU4                                            <---------ICU4                           --------->YAB1                                            --------->YAB1                          <---------YAB1                                            --------->ICU4                          --------->ICU4                                            <---------YAB1                        --------->YAB1                                            --------->YAB1                        <---------ICU4                                           <-------TEIL                       <---------YAB1                                        <---------YAB1                       --------->ICU4       --------->HSFB2a(2)              --------->ICU4                     --------->YAB1      <----------DOF2                   <---------ICU4                    <---------YAB1    <-----------GT1                      --------->YAB1                  --------->YAB1 --------->AHL20(2)                       --------->ICU4 ------->GLK1(2) <---------YAB1----------->GT1      <-----------GT1       <---------YAB1   gactctgttttcgatatgtatgataataataataagttaataacttttggaattttactgatttttctgtaatctcatgatgattcatgatgatgaagac  1765200  Previous    Next  AGI:  At5g05850.1    Description:  leucine-rich repeat family protein. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G11330.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64249.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype (InterPro:IPR003591) Range:  from: 1762406    to: 1764679    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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