Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             <------MYB46(1)                                                                                           <------MYB83                                                        <---------YAB1                    --------->MYB111(1)                                                       <---------AHL20(2)                 --------->MYB59                                         <---------ARR11(1)           --------->ZAT14     --------->MYB111(2)    <---------AHL20(2)         ----------->RAV1(1)     --------->AHL20(2)--------->ANAC46 --------->MYB46(2)   --------->AHL20(2)  <---------STY1(2) <---------ARR11(3)   --------->MYB46(3)         <---------MYB55(1) -------->YAB1  --------->STY1(2)        --------->ARR11(3) <---------ICU4              <<<<<<<<<MYB98 -------->AHL20(2)     --------->STY1(2) <-----------ARR10  <-----------GT1   <---------MYB52(1) --------ATHB51 <---------STY1(2)       <---------CCA1(2)--------->YAB1  <-----------GT1<---------MYB52(1)   aattataaaattctaactagctactagctaggccaacatttcatatctttccaaaattttaataaccactagtatacaccgtttttttttgttaggtagt  1742300                                                                              <------NtERF2                                                                --------->ANAC55(2)                                                                <---------ANAC58                                                                <---------ANAC55(2)                                                                <---------ANAC55(1)                                                                <---------ANAC46                                                                <---------ANAC58        <---------TOE2(3)                     ---------->DOF2 --------->DAG2    -------->HAHB4        <---------DEAR3(2)              --------->YAB1        ---------->DOF2    --------->YAB1        ------>NtERF2         <---------AHL20(2)  ----------->RAV1(1)      <---------YAB1        <---------DEAR3(1)         <---------YAB1  <----------ID1          --------->ANAC55(2)      <-----------HVH21         <        <---------AHL20(1)  --------->REM1(1)    --------->TOE2(3)       --------->ANAC46           <   ttttctctaatattattcaaaataaaagcgacaacacataaagttgttcatacttaatgatagtttacgtgttatacgtcggctatgtctaaggcttaac  1742400                                                                           --------->ANAC55(2)                        ----------->GT1                                    <---------ANAC55(2) --------->YAB1        <------ZmHOX2a(1)                               <----------DOF2 ---------ATHB12      ----------->GT1   <-----------GT1               <---------ANAC58 ---------YAB1 --------->AHL20(2)      --------->AHL20(2)             <---------ANAC58   taatcataaaacacacataaaataaggagaaaaacttcaaatttactaaaaaaaaccaaaaacaatgcgattgctttacttaacaaaaacaatgcgattg  1742500                                                             --------->MYB52(1)                                                          --------->TOE2(3)                                                    --------->TOE2(3)                                                    --------->TOE1(3)                                                   --------->At4g35610                                                   <---------At4g35610                                              --------->ANAC58                                    <--                            <---------TOE2(3) --------->ANAC55(1)                                 XXX                          --------->AHL20(2)  <---------ANAC55(2)                                <---                          <---------AHL20(2)  --------->ANAC58       <----------DOF2             <---                  ------->TEIL                --------->ANAC55(2)    <---------DAG2             -----               <---------REM1(1)     <---------HSFB2a(2)  --------->TOE1(3) <----------DOF2     -----     ----------->GT1  --------->AHL20(2)      --------->ANAC46 --------->ANAC46     <----------DOF2 -   ctacaaattgtttatagatgtaacttaattaatgttattcgagataacacgtaagcttaaacttaacgacactttattctttatgtctttttttgtattt  1742600                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                         ----------->RAV1(1)                                 xxxxxxxx                                        <------NtERF2                                        xxxxxxxx                                      <---------ATERF1(2)                                    xxxxxxxx                                      --------->DEAR3(1)                                     xxxxxxxx                                      --------->RAP2.6(2)                             <---------At4g35610                                      --------->ANAC58                         <---------ICU4*TSS ---                                      --------->ANAC58                         <---------AHL20(2) <--                                      --------->ANAC46                      --------->YAB1   xxxxxxxx  <---------ALFIN1                    --------->RAP2.3(2)                  <---------YAB1    xxxxxxxx -------SPL7                          --------->RAP2.3(3)                  <---------AHL20(2)xxxxxxxx XXXXXXXXXXXXXXXXX>MIR841            --------->RAP2.3(1)                  --------->AHL20(1) xxxxxxxx ------ANAC58                       --------->At4g35610                   <---------AHL20(1) xxxxxxxx ------ANAC58--------->YAB1        --------->ANAC46                      --------->YAB1      xxxxxxxx ---------->AtSPL8     --------->ANAC58------>NtERF2 <------------CBF--------->AHL20(2)      xxxxxxxx ---------->AtSPL3     --------->ANAC46<---------RAP2.6(3)     ---------->DOF2<---------YAB1 xxxxxxxx -------->SPL7         --------->ANAC58<---------ATERF1(1) ---------->DOF2--------->AHL20(2)---------   cgtaccacttgaaaatgatacttctacgaaatttcataagccgccacaaaaacaagattgaaaaagaaagaataaatataataaatgcagaagcgcctgt  1742700                                                     ----------->RAV1(2)                                                     --------->ZAT2                                                    ------>MYB83                                                 xxxxxxxxxxxxxxxx>smallRNA(le3)                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                           <-------TEIL                                        <------MYB83------>MYB46(1)                                        <------MYB46(1)                                        <---------HSFB2a(1)     <---------MYB46(3)                 --------->HSFB2a(1) xxxxxxx>smallRNA(fl3)                  <---------HSFC1(2) xxxxxxxxxxx>smallRNA(le3)              <---------DEAR3(2) xxxxxxx>smallRNA(le3)                  --------->HSFC1(2) xxxxxxxxx>smallRNA(le3)               <---------TOE1(2)  <---------ANAC58 xxxxxxxxxx>smallRNA(le3)              <---------TOE2(2)  <---------ANAC46 xxxxxxxx>smallRNA(se3)              <---------SPL7 -------->P xxxxxxxxxx>smallRNA(se3)            xxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxx>smallRNA(se3) ------>At4g35610             xxxxxxxxxxxxxxxxx>smallRNA(fl3) -------At4g35610            xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxx>smallRNA(s2)    xxxxxxxxxxxxxxxxx>smallRNA(se3)  <----------DOF2 xxxxxxxx>smallRNA(s)       <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ANAC58 xxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(fl3)------>NtERF2            <---------HSFB2a(2) xxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxx>smallRNA(si3)      --------->HSFB2a(2) xxxxxxxx>smallRNA(fl3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)----------->GT1     <----------DOF2 xxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxx>smallRNA(si3)<------NtERF2       <---------DAG2    --- xxxxxxxxx>smallRNA(fl3)------>ZmHOX2a(1)  xxxxxxxxxxxxxxxx>smallRNA(s)      <-----------GT1     ---- xxxxxxxxxx>smallRNA(fl3)  --------->At4g35610xxxxxxxxxxxxxxxx>smallRNA(s) <---------ANAC58      ---- -->RAV1(2)         xxxxxxxxxxxxxxxx>smallRNA(si3) <---------ALFIN1        <---------ANAC58 <--------   agctcagtggatagagcgtctgtttcctaagcagaaggtcgtaggttcgacccctacctggcgcgttaattttagtttcttactttttagaaaattactc  1742800                     <---------AHL20(2)                     -------->HAHB4                     -------->ATHB1                     --------->ATHB12                     --------->ATHB51                    --------->ICU4                 <---------AHL20(2)           ----------->GT1      ---------->DOF2<---------ICU4    ===============================================================MADS_MADS    <---------------AGL15                             <----------DOF2   --------->TOE1(3)<---------YAB1                 <---------ALFIN1   --------->TOE2(3)<---------ATHB51              ----------------->AGL1   <---------------AGL15                          <-----------------AGL1   --------------->AGL15                          <---------ZAT18                  <----------DOF2  ----------------->AG                           <-----------------AGL1  --------->bZIP60(1)  =================================================================MADS_MADS       <---------DAG2 --->ZmHOX2a(1)  --------->AHL20(1)              <-----------------AG    <---------bZIP60(1) ----->TOE2(3)   --------->AHL20(2)            <-----------GT1          ---------->ID1          <---- ----->TOE1(3)   <---------AHL20(1)      <----------DOF2  <---------ANAC58<-----------TGA1  <-------- ---GT1   ----------->GT1               --------->TOE2(3) <---------ANAC58<-----------HVH21 <--------   cttaaccttaaaggggtaattaattattgggatgcgactaaacctttttttgcccactttgggtactgttttttgtcgtcactcgctttatctacttttt  1742900                                                               <---------DEAR3(2)                                                              <---------DEAR4(1)                                                              <---------DEAR3(1)                                                  --------->ANAC58                 <---------ICU4           <-----------HVH21   <---------DREB2C(2)                 --------->YAB1          <----------DOF2      <---------At1g77200                <---------ATHB12   --------->ANAC58           --------->ETT(1)            --------->ANAC55(2)     ---------->DOF2               --------->ANAC58     <-----------RAV1(1)               --------->YAB1 -----AHL20(2)  --------->ICU4   ---------->DOF2  --------->ANAC58                 --------->At4g35610 -DAG2    --------->GLK1(2)  --------->ANAC58     --------->ANAC46                 <---------At4g35610 --DOF2  <---------GLK1(2)   --------->ANAC58   <---------ALFIN1        <---------ALFIN1  -----------   aattcaaaaaagattctaatcatcaactctcactcaaaagcccctttcacacactccattgttgtcggtgtcccaaaccttgttctgctctctcgtaata  1743000                               <---------YAB1                               <---------ATHB12                   <---------ARR11(3)                   --------->ARR11(3)                   <-----------ARR10                          --------->MYB46(3)                   --------->ARR14(2)                       --------->ANAC58                  --------->RVE1(1)                         --------->ANAC58                  --------->CCA1(1)  ---------->DOF2        --------->ANAC46                       <- >GT1       ----------->GT1 ------>ZmHOX2a(1)           --------->ZAT6     --------->MYB59<-------TEIL   tgcatagaactaaatgctaaatatcttctcctaatgaatgaaagtgagaacaattctaacacaaaccacttaagaattaggcaattcaaaggttcatcaa  1743100                                                            <----------DOF2                                                         --------->GLK1(2)                                                        <---------GLK1(2)                                    --------->YAB1<---------MYB52(2)        -------->P                 <-------TEIL ---------->DOF2 <---------GLK1(2)       <---------AHL20(2)  --------->MYB52(1) --------YAB1        --------->AHL20(2)    <---------MYB52(2)    <---------ANAC46         <----------   catgattctctacctgtctgtttttatataatccatattcatagaactaacaaagaacgattcttttgggtataacatcagacagagacagaggtcagag  1743200  Previous    Next  AGI:  At5g05795.1    Description:  pre-tRNA. tRNA-Arg (anticodon: CCT) Range:  from: 1742693    to: 1742765    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g05800.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G11290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69032.1) Range:  from: 1743087    to: 1745246    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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