Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                         ------>ZmHOX2a(2)                      <------ZmHOX2a(2)                     --------->ARR14(2)                     <---------ARR14(2)                        --------->ANAC58                   --------->LBD16                             --------->ANAC58      --------->ARR11(3)    ---------->DOF2         ----------->GT1  ---------->DOF2 --------->ANAC46              --------->ARR11(3) --------->ANAC58 ------->AtLEC2  <---------LBD16                <---------ARR11(3) --------->ANAC58       ---------->DOF2 -----GT1    --------->WRKY12        --------->ARR11(3) ---------->DOF2        ----------->GT1-------   catggaaagagctcgtttacccggatcgcataaagagtagaacttgtcaacatctagtaaaagagaggcaagaacaacaacatgtaaaattagaaagctt  1678800                                                                                                    -                                                                                                    <                                                                                                    <                                                                                   ----------->GT1 <-                                                ------>MYB83                       --------->At4g35610                                     <------NtERF2                             ------>NtERF2       <-                                   --------->DEAR3(1)    <---------ZAT2       ----------->HVH21    <-                                <---------ANAC58<---------LBD16               --------->DEAR3(1)   <-                                <---------ANAC58------>MYB46(1)           --------->DEAR3(2)       --                            <---------ARR14(2) --------->MYB52(1)      --------->LBD16             --                           <------ZmHOX2a(1)  --------->TOE2(2)      <---------LBD16               --                         <---------TOE2(3)    --------->TOE1(2)     --------->MYB52(1)      --------- -->TOE1(3)     <------ZmHOX2a(1)  <---------DEAR3(1)    --------->At4g35610  --------->MYB46(3)   <-   aacatttacgagaaaataggagaaaatgaggatagcgtcgtcgtctaacctacggagagagctcgaagaaaaccggagcgacgaccgctaaaatccttga  1678900              <---------ANAC58            --------->ALFIN1          <---------DEAR3(2)      ----------->HVH21 ------>ZmHOX2a(2) -------->GLK1(1) ---------GLK1(1) ------ZmHOX2a(2)                                         --------->ANAC58 --------ARR14(2)                                  --------->ANAC58 --------AGP1 <---------ANAC58                     <---------ANAC46 ----------ARR10                                 --------->MYB52(1) --------ARR11(3)                          <---------REM1(1)   ---------->DOF2 ------->ARR14(2)                  ------>NtERF2----------->TGA1                                  <-- ------->ARR11(3)                 --------->RAP2.6(2)     --------->ANAC58                      ----- ------->ARR14(3)               <---------At4g35610<---------ANAC55(2)                          <---- >TOE2(3)<---------DEAR3(1)   ---------->CDC5   ----------->HVH21    ----------->GT1      <---------HSFB2a(2) --------ARR14(3)  <-------GAMYB--------->At4g35610--------->ANAC58---------->DOF2   <---------ZAT6   agatctcttcgacggtgcgagggttagaagactcagcggccatagatgtagtgacggaagaagcaaaaagaaagaaaattacaagtattgttagagaaga  1679000                                                                      --------->ANAC58                                                                      --------->ANAC58                                                                     --------->SPL7                                                                   --------->ZAT18           <------ZmHOX2a(2)                                    <------------------SPL14 -------MYB59                                             --------->ARR14(2) ---->ARR11(3)                                            <---------ARR14(2) -----ARR11(3)    <---------ZAT6  <---------TOE2(3)       --------->GLK1(2)   cctaagtagatagatcagtggtgttagagatggattgaggtctgcatcaatggtttccaaaatccgatgcgcacggacaagagagatagagagagaccag  1679100                                   <-----------------AGL2                           ----------->GT1                     ----------->RAV1(2)       <----------DOF2    --------->DAG2               <---------AHL20(2)                   <--------     *TSS                ---------->DOF2             <---------AHL20(2)                 <---------GLK1(1)   agtttaagactttaagagtagtagtagtaaagtaacttctgtttttggtctctattttaaaatgggcctggcccatggcccatcgagttgaattctgata  1679200                                                          <----------DOF2                                                          --------------->AGL15                                                          <---------------AGL15                                                         <---------ANAC46                                                         <---------ANAC58                                                         <---------ANAC58                    <------NtERF2                                                ---------->DOF2                            <---------ANAC58                                             *TSS   --------->ALFIN1                       <---------ANAC46                                            <---------At4g35610                            <---------ANAC58                                            --------->At4g35610     <---------ZAT14    <-----------RAV1(2)                 ------->TEIL              --------->GLK1(2)   --------->ICU4        <-----------HVH21 -YAB1          <---------CCA1(2)  ---------->DOF2  <-----------RAV1(1)            ------>ZmHOX2a(1)   aaacgacgttttctctctgtatctctctgtaaatgagtaaagaagaagctgaaagtgtggctttaatgagtatagtttgatcatcctcttcaggcgtagt  1679300                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                                   <-                                                      <-----------GT1                            <---                  ----------->GT1                  <---------ICU4             <---------PCF2     ----                 <------MYB46(1)                  --------->ICU4             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                 <------MYB83                    <---------ARR11(3)<------MYB83        ------>ZmHOX2a(2)               <--------P                 ------>NtERF2            <------MYB46(1)    <------ZmHOX2a(2)            <---------TOE2(3)            <---------ANAC46        <--------P--------->ALFIN1     <----            --------->MYB59         --------->At4g35610      <-----------RAV1(2)     --------->ARR14(2) <---------HSFB2a(2)          <------ZmHOX2a(1)----------->GT1<---------TOE1(3)      <---------ARR14(2)   agtctcgaaacacttaggtagggttttacagaggaagaagatgccgagggagataattacgcttcaggttggacaatgtgggaaccagatcggtatggag  1679400          <----------DOF2 ---------HSFC1(1)                 --------->ICU4 -------->HSFC1(1)          <---------At4g35610 -------->HSFB2a(2)         --------->At4g35610                                  <---------ARR14(2) ---------HSFB2a(2)    --------->ANAC58                                          --------->ARR14(2) --------LBD16         --------->ANAC58       <---------HSFB2a(2)       <----------DOF2 ------ARR14(2)        --------->ANAC46       --------->HSFB2a(2) --------->ARR14(2) ----->ARR14(2)<---------ANAC58  ---------->DOF2                  <---------ARR14(2) -----GLK1(1)  <---------ANAC58--------->At4g35610 <------ZmHOX2a(1)  ------>ZmHOX2a(1)        ------   ttctggaaacagctttgccttgagcacggcatcagcaaagatggtattctcgaggacttcgctactcaggtcctctttcttcgaattcgtttctatgcat  1679500                          --------->MYB52(2)                    <---------ANAC46                    <---------ANAC58                  <---------MYB46(3)                 <--------P<-------GAMYB               <---------MYB46(3)    <---------WOX13(1)    <---------MYB46(3)              <---------WOX13(1)           <---------At4g35610  --------->ATHB12--------->MYB111(2)                   --------->ATHB12               <------MYB83 <---------AHL20(2) <---------ANAC58                   <---------YAB1                  <------MYB46(1) --------->AHL20(2)<---------At4g35610              --------->ARR14(2)                <---------DEAR3(1) ->TEIL        --------->ATHB12                     <---------ARR14(2)        ------->TEIL      -----   cgattaattgaattccatggttgctggtttgttgttgttgttcatagaattgtggatttgattgatgaactacttgtatgtatgtagggaggtgatagaa  1679600                             --------->ZAT6                            ------>MYB46(1)                            -------->P                           ----------->RAV1(1)                       <---------WRKY18(1)              --------->ATHB12                    --------->At4g35610               <---------WOX13(1)                ------>MYB46(1)                     --------->ATHB12                --------->MYB52(1)                 <---------YAB1               --------->YAB1     --                ------>MYB83------>MYB83           ------>ZmHOX2a(1)       <---------YAB1   --------- ----->DOF2<-----------GT1--------->AtMYB61<---------ARR11(3)         <---------ZAT6  --------->YAB1<   aagatgtgtttttttaccaagcggatgaccaacactatataccaagagctctcctcattgatttggagcctagagttatcaatggtattcagaatggtga  1679700  Previous    Next  AGI:  At5g05610.1    Description:  PHD finger family protein. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G11200.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50140.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 1676992    to: 1679105    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g05620.1    Description:  ATGCP2/TUBG2 (GAMMA-TUBULIN); structural molecule. Identical to Tubulin gamma-2 chain (TUBG2) [Arabidopsis Thaliana] (GB:P38558); similar to TUBG1 (GAMMA-TUBULIN), structural molecule [Arabidopsis thaliana] (TAIR:AT3G61650.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61748.1); similar to gamma tubulin [Nicotiana tabacum] (GB:CAC00547.1); similar to gamma-tubulin [Lupinus albus] (GB:AAN87551.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Tubulin; (InterPro:IPR000217); contains InterPro domain Gamma tubulin Range:  from: 1679245    to: 1681720    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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