Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  --------->AHL20(2)                                               <---------YAB1                                            <---------YAB1                                          ----------->GT1                                      --------->ICU4                                      <---------ATHB51                                   <---------YAB1<---------AHL20(2)                                  <---------AHL20(2)        --------->YAB1            --------->AHL20(2)     <------NtERF2 ----->ZAT6                  <-------TEIL<---------YAB1<---------ANAC46                           --- ----ALFIN1              --------->MYB59 <---------TOE2(3) --------->ANAC58                       <-- ---ALFIN1           --------->WOX13(1)  <---------TOE1(3) --------->ANAC58                      <---   ctctaattcatcgtaatgggtttcaattaggctcattaaaattatggttattatatggcgcaagcttaagtcgaatttctatgaaatcgcaatactcgag  1656200           ----------->GT1           --------->LBD16          <---------ANAC46          ----------->GT1         <---------LBD16        --------->MYB52(1)                                                               --------->ATHB12 ----------->GT1                                                                        <---------ATHB12 ------>ARR14(2)                                   <---------DAG2                  <---------ZAT18 -------ARR14(2)          <-------TEIL             <----------DOF2          --------->ANAC58 ---ZmHOX2a(1)    <-----------GT1       <-----------GT1                     --------->ANAC58   <-----   gatttgaaaatagcggaaaaaaaccacattcattcacatatttcacattccaactttttcttcttaacaatatttaagaagccagtgcaaatcattcggt  1656300                   ---------->DOF2           <---------ICU4           --------->ATHB51           <---------AHL20(2)           --------->AHL20(2)                                                          --------->TOE2(3)          --------->ICU4                                                     --------->YAB1          <---------YAB1                                                     -------->HAHB4       --------->AHL20(2)                                                   <---------YAB1       <---------AHL20(2)                                                   --------->ICU4       <---------YAB1                       ----------->GT1                 <---------ATHB12      --------->AHL20(2)                   ----------->GT1                 <---------TOE2(3)      --------->AHL20(1)       --------->ANAC46                           --------->YAB1      <---------AHL20(1)       --------->ANAC58                  <-----------GT1       --------->TOE1(3) --GAMYB--------->YAB1         --------->ANAC58   --------->AHL20(2)--------->TOE2(3)  <----------DOF2   tgagagaatataattattttcaaaaggaaatagaagcaatgtgagtgggaaaaaaaatagaacattttaacctcactaatgataaacaactttaaacatc  1656400                                                                              --------->ANAC58                                                                              --------->ANAC58                                                                            --------->CCA1(2)                                                                           --------->ARR11(1)                                                                           <---------ARR14(2)                                                                           --------->ARR14(2)      <-                                                                          <------ZmHOX2a(1)--------->ARR14(2)                                      <---------ARR14(2)           <------------CBF        <---------ARR14(2)                   --------->ANAC46   --------->ARR14(2)        =================HOX2a_HOX2a      ---              <-----------GT1 <---------ANAC58                  <------ZmHOX2a(2)       <---------MYB59    ------>ZmHOX2a(1)         <---------ANAC58    --------->ANAC46--------->ATHB12    ------->TEIL<--   gtaatcctcttaagtcttaccacataactcttgcgaaccggttccaatttacacaaaaatggagcgatccattggaggatacgaactgaaccgaatttga  1656500          --------->ARR14(2)          <---------ARR14(2)       --------->ANAC46                    <----------DOF2       --------->ANAC58                <---------RAP2.6(2)          --------->WRKY18(1)        ------       --------->ANAC58                <---------DEAR3(1)          <-----------HVH21           ------ ------GAMYB                          --------->RAP2.6(3)          *TSS   ------>ZmHOX2a(1)    ------ -------->GT1               --------->ANAC46<---------ZAT14   --------->ATHB12                <------ -------MYB46(3)    <---------TOE2(3) <---------ORA47(1)     <---------ATHB12 ----------->HVH21<-----   tggttaaacccgaaaccggtttaagaaaacacaaaacttggacggcttcagtgaaaaattcaaatcatcggtcatcctctctgactctctcaaatcgaat  1656600                                                                         --------->At4g35610                                                                       --------->SPL7                                                                     <---------SPL7                                                                     <-----------HVH21    <----------DOF2                                              <-----------GT1      --------->ATHB12 --->GLK1(2)                                                  --------->GLK1(1)     --------->HSFB2a(2) --->ARR14(2)                      <---------MYB52(2)    <---------At4g35610  ------->TEIL ->TEIL                            --------->MYB46(3)    --------->LBD16 <---------At4g35610 ---ARR14(1)                      --------->SPL7         --------->At4g35610<-------TEIL ----ARR14(2)          <------ZmHOX2a(2)   <---------GLK1(2)  <---------GLK1(1)     <---------HSFB2a(2)   ctgaagcttttagttttattctacgatcaaattccgaacgaacaaaattctcttgattccgctgatttctccgtccgatgcatcttctcgattgaaaatt  1656700                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                -----                                                                                                -----                                                                                               <-----                                                                                              <------                                                                                             ------>ZmHOX2a(1)                    --------->LBD16                                                      --------->ARR14(2)                  <---------LBD16                                                       <---------GLK1(1)        <---------MYB46(3)           --------->At4g35610                                --------->GLK1(1)        --------->MYB52(2)  --------->ZAT18      <---------ANAC58                  --------->At4g35610      <---------MYB52(1)<------ZmHOX2a(1)        <---------ANAC58  <-------TEIL    <---------At4g35610   ccattctcgtttgttattccaccggaggagtgagcaatcggctctcatttgtcttgttttagctcgatgttcgtcagaaaatttctgcagaaatcctccg  1656800      --------->GLK1(2)      <---------ARR14(2)      --------->ARR14(2)     <---------GLK1(2)         ------>NtERF2 -----------HVH21             --------->DEAR3(1) --------DEAR3(2)             --------->ANAC46 --------MYB46(3)           ------>ZmHOX2a(1) -------DEAR3(1)   ------>ZmHOX2a(1) ---->LBD16     ------>ZmHOX2a(1)  <---------ANAC46                           <------ZmHOX2a(1) ->NtERF2   <---------ALFIN1<---------ATERF1(1)                  <-----------GT1   ---------->DOF2 ----DEAR3(1)------>ZmHOX2a(1)<---------ALFIN1          <----------DOF2  ------>ZmHOX2a(1) ---LBD16 ------>ZmHOX2a(1)<---------ALFIN1         <---------CCA1(2)--------->ARR14(2)   gcggtcagaatcctcctcctcctatagctcctccgcctcgggtattctagcctcatctctttttattctactatcctcgaggaataaaagttccattttt  1656900                                                              --------->ZAT2                                                              --------->At4g35610                                                     --------->ALFIN1                                                     <--------P                                                  <---------AtMYB61                   <---------WOX13(1)                                                  <---------TOE2(3)                 --------->ATHB12                                        <---------ZAT18       <---------At4g35610  <---------AHL20(2)     --------->HSFC1(1)                 <---------ZAT14       <---------ZAT2       <---------YAB1     --------->HSFB2a(2)                --------->ZAT14<------MYB46(1)     <---------LBD16     <---------HSFB2a(2)                --------->ZAT18<------MYB83       <---------ANAC46       ----   gatgcttctagaccattctcccgcttggagtttcactcttagtatactagcttaggttgggctcagctctatttttctgtggaatttgattgatgcctat  1657000                              <-----------GT1                              <---------AHL20(2)                           <---------ARR11(3)                                --------->GLK1(2)                           <---------AHL20(1)                              <------ZmHOX2a(1)                           --------->AHL20(1)                   --------->AHL20(2)     --------->LBD16<-----------GT1                          <---------AHL20(2)           --------->ARR11(3)    <---------HSFB2a(2)    --------->ARR11(3)               --------->AHL20(2) --------->TOE1(2) ----->YAB1    <---------AHL20(2)<----------DOF2   ---------->ID1<---------AHL20(2)<------ZmHOX2a(1)   aatgttccccaagttattgaatttacaaatattttctttgcgatgaatagtttgttctcattttaaatttatagctaggaatctaggattgagaacttgt  1657100  Previous    Next  AGI:  At5g05570.1    Description:  transducin family protein / WD-40 repeat family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50131.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC75571.1); similar to hypothetical protein OsJ_024676 [Oryza sativa (japonica cultivar-group)] (GB:EAZ41193.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 1656567    to: 1663930    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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