Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                          ----------->GT1                                                 --------------->AGL15                                                 <---------------AGL15                                         --------->AHL20(2)         ----------->GT1 ---------->DOF2                         <---------YAB1--------->DAG2 ----->MYB46(1)                         <---------AHL20(2)         --------->DAG2 ----->MYB83                            --------->AHL20(2)        ---------->DOF2 -------->MYB52(1)                <---------ALFIN1    ---------->DOF2 -------MYB46(2)               --------->ANAC46 ----------------->AGL3                          <---- ------>MYB46(3)            ------->GAMYB<---------AHL20(2)--------->AHL20(2)                   ----- ----->ANAC46              <---------ALFIN1   <-----------GT1  --------->AHL20(2)  --------->GLK1(2)   ccaaacagcgaagtttttggcaacttgcaacaccctccacattttaattatccaaataaagttaaataaaaagttaaacttagacattctattccatgat  1384200                                                                       --------->TOE2(3)                                                                     --------->ARR14(2)                                                                     <---------ARR14(2)                                                                     --------->GLK1(2)                                                                     --------->ARR11(3)                                                                     <---------ARR11(3)                                                                     <-----------ARR10                                                             <---------GLK1(2)                                                             --------->ARR14(2)                                                          --------->ANAC46                                                          --------->ANAC58                                                          --------->ANAC55(1)                                                          <---------ANAC55(2)                                                          --------->ANAC55(2)                                                          --------->ANAC58                   <------MYB46(1)                     <---------ARR14(2)         ---------->ID1                                --------->ARR14(2)           <----------DOF2 <   <---------ARR11(3)                           --------->YAB1      --------->GLK1(1)           <----   --------->ARR11(3)                          <---------ATHB12     <---------CCA1(2)   <----------DOF2 -----YAB1         <------MYB83           --------->TOE2(3)  <---------ARR14(2)<---------At4g35610--- ------>GT1      <--------P --------->YAB1--------->YAB1 <---------LBD16      <-----------GT1--------   gttaaaatcttgtcgtcaagttggtcttactcatatttcaacattcttaatcatacaaatacggaatcgcaaatcttatttatctgctttctttcaccaa  1384300            --------->AHL20(1)                                                                 ------           --------->YAB1              <----------DOF2                                  --------->YAB1           --------->AHL20(2)    --------->YAB1                                        <---------AHL20(2)      <---------GLK1(2)    ----------->RAV1(1)         --------->YAB1               --------->AHL20(1) ---------YAB1        --------->MYB46(3)  ------------>CBF     ----------->GT1      <---------AHL20(1) --------CBF<---------AHL20(2)   <---------ICU4  <-----------GT1                   --------->AHL20(2) ------>YAB1<---------AHL20(1)--------->TOE2(3)--------->AHL20(2)         ----------->GT1  --------->YAB1 ---->CBF <---------YAB1--------->ANAC46 <-----------GT1      --------->CCA1(2)  --------->AHL20(2)   ttgtaatagattattatattttgaacaaacaacatttatgactttacaatttaacaaatataagatagaaaaaaacaagttaaaaatatataatcatctg  1384400                             ----------------->AG                         <<<<<<<<<CBP60g                     >>>>>>>>>E2Fd                     >>>>>>>>>E2Fc                    ------>NtERF2                    --------->LBD16                                                                 <                   --------->ANAC58                                                                 -                   --------->ANAC46                                                                 -                   <<<<<<<<<<E2Fa                                              ------------>CBF     <                   --------->ANAC58                                     --------->DAG2          -----                  <---------LBD16                    ---------->DOF2   ---------->DOF2       <------- ----->GT1<-----------GT1<<<<<<<<<SARD1----------->GT1    --------->At4g35610  <---------ATHB12 <----   ttaatatggcattaaccattcccgccaaatttccaaataagttgtataacaaaaaaaaagagcagacttgagaaaaagcccatcaatattcgaatgtgat  1384500    <---------DAG2    <----------DOF2 ---------ZAT14 -------->ZAT18                                                                     <---------ZAT18 -------->ZAT14                                                   <---------KAN4(1) <---------ZAT14 ---------ZAT18                                       ------>NtERF2--------->KAN4(2)--------->ZAT14 ---------->AtSPL8                                 <---------At4g35610            --------->At5g28300 --YAB1                 ---------->ID1             --------->At4g35610         <---------At5g28300--- -----------AtSPL8  <----------DOF2             ------>ZmHOX2a(1)------->TEIL  <---------LBD16  -----   agtacactttaggcatttaggcctttggcccaaactaagtatgttgtctccttcgctgccaaggatgaacattcttggtttcacggtgaacttcttgatc  1384600                                                      <---------SPL7                                                      --------->ZAT14                                                    --------------->AtSPL8                                                --------->ARR11(3)                                                <---------ARR11(3)                                              <---------HSFC1(2)                                              --------->HSFC1(2)        <-----------RAV1(2)                                           --------->LBD16           --------->YAB1                                          --------->ANAC46          <---------YAB1       --------->LBD16                                          --------->ANAC58 --------->ANAC58             <---------LBD16                                          --------->LBD16  --------->ANAC46   <------ZmHOX2a(1)  ----   ---------->DOF2   --------->ANAC58     --------->ANAC58 --------->ANAC58<------ZmHOX2a(1)--------- ------>At4g35610    --------->ANAC58    --------->HSFB2a(2)        --------->ICU4     <---------LBD16 ->ZmHOX2a(2) <---------HSFB2a(2)        <---------HSFB2a(2)      --------->YAB1   <-----------HVH21   cgatgcaaagtcttacccagaagaagcaatacgagttctctctcccgaaacatctccgtactcgccagttatgatcaggaggaagtatcaccgggacgat  1384700                                                                     <---------HSFB2a(2)                                        <---------At5g28300          <---------TOE2(3)                               --------->ANAC46                      --------->HSFB2a(2)                               --------->ANAC58                   <---------MYB52(1)                            <---------ZAT14                   --------->At4g35610                            --------->ZAT14                   <---------ZAT2                            --------->ZAT18                   <---------At4g35610<---------ANAC58    --------->ICU4----------------------->TaNAC69(2)--------->HSFB2a(2)  --------->ANAC58         ---    <---------ATHB12        <---------ZAT18  <----------DOF2  --------->ZAT2     <---------ANAC58<--- ------>DOF2     ----------->GT1       <-----------GT1  --------->MYB52(1)   ---------->DOF2     ---- >SPL7           --------->YAB1--------->ANAC58     <---------HSFB2a(2)  --------->ANAC58       <----   atagcaatgagttttcgaatcgtaacttggtgcacgaaattttacagctttgtgctagaaacggagctgttatggaagcaaaagcttgccatgggaagat  1384800                                                                                   ------>NtERF2                                                                                   <------NtERF2                                                                                  --------->ANAC46                                                                                  --------->ANAC58                                                                                  --------->ANAC58                                                                            <---------ANAC58       --------->ATHB12              --------->KAN4(2)                      <---------ANAC58      --------->ICU4          <-------GAMYB                                --------->ZAT2 ------>KAN4(2)         <-----------GT1        <---------TOE2(3)     <---------ANAC46 ------KAN4(1)       ----------->GT1<---------KAN4(1)--------->KAN4(2)     <---------At4g35610 ----->KAN4(1)      <---------ARR11(3)      <---------YAB1     <---------AtMYB61 <---------LBD16 -----YAB1          --------->ARR11(3)   <---------YAB1      --------->ALFIN1  <---------WRKY18(1)   tattcgtattgatttggagggagatgttactctgttgaatgttcttattaatgcttattccaagtgtggttttgtggagcttgcccgccaagtgtttgat  1384900                                                   --------->ANAC55(1)                                                   --------->ANAC55(2)                <---------ANAC58                 <------MYB83                      --------->ANAC46                   <---------ANAC58                 <------MYB46(1)     <---------WOX13(1)                               <---------ANAC46             <---------HSFC1(2)    --------->ATHB12--------->ANAC58                 <---------AHL20(2)             --------->HSFC1(2)   <---------YAB1  <---------LBD16               <---------RVE1(1)            --------->GLK1(2)     --------->ICU4<---------REM1(2)               <---------CCA1(1)   <---------ANAC58   <---------ANAC58   <---------ANAC46                --------->ATHB12   <---------ANAC58   <---------ANAC46 <------MYB83--------->ANAC58  <---------At4g35610    <--------  --------->ATHB12    <---------ANAC58 <------MYB46(1)               --------->At4g35610    <--------   ggaatgcttgagagaagcttggtttcttggaacaccatgattggtttgtatacacggaatagaatggagtcagaagcattggatattttcttggagatgc  1385000                                                        --------->At5g28300                                                       <---------ANAC46            <---------AHL20(2)                         <-----------GT1        <---------ANAC58                   --------->AHL20(2)                 ----------->GT1                <---------ANAC58             ----------->GT1                 <---------ANAC46         <----------DOF2             <---------ANAC58           <--- -GLK1(1)      <---------ZAT14        <---------ZAT14  ----------->GT1<---------ANAC46        <------ -At4g35610 <---------TOE2(3)       >>>>>>>>>TAC1<----------DOF2      <---------ANAC58        <------   gaaacgaagggtttaagtttagtgaattcactatatcgagtgttctttctgcttgtggggtaaattgtgatgccttggaatgcaaaaaattgcattgttt  1385100  Previous    Next  AGI:  At5g04780.1    Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G52630.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN84062.1); similar to SEC14 cytosolic factor, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA96502.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62400.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 1384565    to: 1386448    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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