Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <------ZmHOX2a(2)                     --------->CCA1(2)                    --------->AGP1                    --------->ARR11(3)                    <---------ARR11(3)                    --------->ARR14(2)                              <-----------GT1                ---------->DOF2                                    <---------CCA1(2)           <---------LBD16                            --------->AHL20(2)                          <--           <---------HSFB2a(2)                        <---------AHL20(2)                          ---   <----------DOF2  <---------ARR14(2)     --------->GLK1(2) ------->TEIL                        <--- -----DOF2 --------->HSFB2a(2)        ---------->DOF2--------->AHL20(2)<----------DOF2    <---------ANAC46   tcatgcttttgttctcggaaaagatccagtgatgagaagagaaagaatttgaagattaaattgaatcttttatctttttcggtttaatagttgtttgttt  1323200                                             <---------RAP2.6(3)                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             ------>NtERF2                                             <---------ATERF1(1)                                            <---------RAP2.6(2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                        --------->ZAT14     <---------ANAC46                        <---------ZAT18     <---------ATERF1(2)                        --------->ZAT18     --------->ATERF1(2)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    <--------P             <---------LBD16                   <---------MYB52(1)      --------->RAP2.6(3)                  --------->LBD16     xxxxxxxxxxxxxxxx>smallRNA(i)                 --------->MYB52(1)                <---------LBD16   <------NtERF2                                  <---------PCF2               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <---------SPL7            <---------HSFC1(2)   --------->LBD16                                xxxxxxxxxxxxxxxxxx>smallRNA(fl3)          --------->ARR11(3) --------->ANAC46--------->LBD16                   <---------MYB46(3)          <---------ARR11(3)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              --------->ALFIN1          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                             <---------MYB46(3)      --------->LBD16<---------MYB46(3)    --------->ATERF1(1)   <---------At4g35610    <---------LBD16<-------GAMYB--------->LBD16  <---------At4g35610       --------->ALFIN1 ---------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               --------->At4g35610 ------>YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->At4g35610       <---------AtMYB61      <-- ------YAB1 --------->HSFC1(2) <---------LBD16<------NtERF2 <---------ARR14(2)<---------ANAC46<------   ttataatccggagatgtttccggttgttcactcgccggaaattgtgccggcttctgtctgcatattttgctgaaggggttgtgggtaccggtttactagg  1323300          <---------LBD16                                                  <---------YAB1      <-------TEIL                                                        <---------ARR11(3)     <-----------HVH21   <------MYB46(1)                                 --------->GLK1(1)   --------->LBD16       <------MYB83       <---------------AGL15        <---------GLK1(1) <---------LBD16         ----------->GT1    --------------->AGL15   <---------LBD16 -------GLK1(1)      --------->ATHB12--------->YAB1           ---------->DOF2               <-------- ---TOE1(2)  <---------MYB52(1)<---------TOE2(3) <---------YAB1--------->DAG2             ------>ZmHOX2a(1)   ttatccggttcacccggtttgtaagattggtttaatgaataaaaatcccttatgagaaaaaaaaaaaagctctggatatcatttgattactcctctttct  1323400                           <-----------RAV1(1)                             --------->ANAC58                           <---------MYB46(3)                              --------->ANAC58              <---------DAG2                                               ----------->GT1              <----------DOF2                                          --------->ANAC46             -    <---------ANAC58    <-----------RAV1(1)    <---------AHL20(2)     ------->GAMYB                 -    <---------ANAC58<----------DOF2 <---------At4g35610            <-----------GT1                  - --DOF2    <---------YAB1<-------GAMYB         --------->AHL20(2) <-----------GT1               <----   aagatggcttcttatgctttttctttctgttgttgctcagttgctctgtttaaatatggactgtttttttaacccacaagtaaaacattttgagaaattt  1323500                             <--------HAHB4                             --------->AHL20(2)                             --------->ATHB51                             <---------AHL20(2)               <---------AHL20(2)            --------->AHL20(2)            <---------AHL20(2)   --------->AHL20(2)       --------->At5g28300   -------->ATHB1   <---------ALFIN1         <---------ATHB51 >>>>>>>>>>>>>>>>>LFY <---------ETT(2) -------->ANAC58      --------->ZAT18                                                ----------->GT1 -------->ANAC58<-----------GT1  <---------AHL20(2)                         <---------ANAC46 -------->ANAC46<---------AHL20(2)                                       --------->ALFIN1 -------GT1--------->ICU4   --------->ICU4                --------->MYB52(1)----------->GT1   <------   acacaccactgtaattttttaatgtccacaattatttaaaaaaacatattcacacataaaaaacagaatggacgggaggggtataactggaaattttttc  1323600                                                                                                 ----                                                                                        ------>NtERF2                                                                                       --------->DEAR3(1)                                                                                      <--------------                                                                                      --------->ATERF1(1)                       ------>MYB46(1)                                                --------->SPL7                     <---------MYB59                                                  <------NtERF2 <                     --------->TOE2(3)                       <---------ANAC58        <---------ATERF1(1)        <------------CBF                                     <---------ANAC46       --------->At1g77200      --------->AHL20(2)                            ------>ZmHOX2a(1) <----------DOF2------>NtERF2  <      <---------AHL20(2)             *TSS      --------->YAB1<---------ANAC58       --------->DEAR3(1)     --------->AHL20(2)------>MYB83 --------->TOE1(3)    <---------ANAC58           ----------->HVH21 -----GT1  <---------MYB46(3)       --------->TOE2(3)    <---------ANAC58          --------->DEAR3(2)   acatcgattaaattggttgaaaacctaatcgccttaaaccctaattgtatcatcctcttccttgcgttctctctttctctctctcgccgacgacgaaaac  1323700                                                                                                   <-                                                                                                   --                                                                                                   --                                                                                              -------                                                                                        --------->ANAC58                                                <---------At4g35610              --------->HSFB2a(2)                                             <---------At4g35610                --------->LBD16    <-                                             --------->At4g35610       -------->P--------->ANAC46<---    <------NtERF2                          <--------P               --------->At4g35610 --------->ANAC46 ----->TOE2(2)                           <---------HSFB2a(1)        --------->ZAT2  --------->ARR14(2) -------WRI1   ---------->DOF2           --------->HSFB2a(1)        <---------At4g35610 --------->ANAC58 ---------ANAC58           >>>>>>>>>TBF1 <---------HSFC1(2)         <---------ZAT2  <---------ARR14(2) ---------ANAC58    <----------DOF2      --------->HSFC1(2) <<<<<<<<<TBF1       <---------LBD16<-----   atgggtgccaaggcgaagaaagctttgaagaagaacatgaagaaggttgctgcttcggcttcttcttctcagctacctcttccccagaacccgaaacctt  1323800 --------ZAT2 ------->ZAT2                                            <---------ANAC58 ------->At4g35610                                       <---------ANAC58<---------TOE1(3) -->TOE1(3)                              >>>>>>>>>>>>>>>>>LFY        <----------DOF2 --------At4g35610                      --------->AtMYB61<---------ANAC46<---------TOE2(3) --------RAV1(2)                       --------->MYB46(3)--------->ANAC55(2)           ------->TEIL ------HVH21               <----------DOF2               <---------ANAC55(2)          <---------GLK1(2)   cagctgattttttggtatttccttcgatactttctcttactaccaccattgtttcgatttcgtatcagactctttagggttttacattgaatctctctgt  1323900                                                             <---------ALFIN1                                                           ------>NtERF2                                                          <---------ALFIN1                                                        --------->AtMYB61                                                        <---------ALFIN1                                                       --------->ANAC58                                                       ------>MYB46(1)                                        --------->DAG2 ------>MYB83                                       ---------->DOF2 --------->ANAC46                                 --------->ZAT2        --------->ANAC58                                 <---------ZAT2      --------->AtMYB61                                 <---------At4g35610 <---------ALFIN1                                 --------->At4g35610--------->MYB46(3)                              <-------TEIL         <---------At5g28300   --------->DAG2                         <------ZmHOX2a(1)        <-----------GT1       ---------->DOF2   atgggtttttgttgatagccactagaaggaggtccagctcgaaaagctccagttaccaccccacctcttcagaataaagctactgtgctatacatcggta  1324000                                                                                <----------DOF2                                                                                <---------MYB52(1)                                                                        <---------AHL20(2)                                                                       --------->AHL20(1)                                            <-----------GT1            <---------AHL20(1)                        <---------TOE2(3) <-----------GT1      <XXXXXXXXXXXXXXXXXXXMIR773B*           <----------DOF2            <---------AHL20(2)   <---------YAB1   <---------ZAT18          <---------ANAC58      ----------->GT1       --------->ATHB51 --------->AHL20(2)          <---------ANAC58     <---------TOE1(3)     <---------YAB1    <---------AHL20(2)          <---------ANAC46     <---------TOE2(3) <----------DOF2--------->At4g35610   gaatccctcatggcttctatgagactgagattgaaggtataaatttacaccctttattattgtgtttgctcaatttaatgccctttgttgtcacaaactt  1324100  Previous    Next  AGI:  At5g04600.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G47120.1); similar to RNA binding protein-like protein [Solanum tuberosum] (GB:ABB87134.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 1323637    to: 1325628    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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