Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            --------->ZAT2                                                                          --------->At4g35610                                                                          <---------At4g35610                                                                     ----------->HVH21                                                                    <-----------TGA1                                                                    <-----------HVH21                                                                   <---------TGA1a                                                                   --------->O2                                                                   ==================================                                                                   --------->ANAC55(1)                                                                   --------->ANAC58                                   ==========================================bZIP_DOF                                   <----------DOF2                 --------->ANAC55(2)                       ----------->RAV1(1)                         --------->bZIP60(2)                       <---------DDF1                              --------->ANAC58                      --------->At1g77200                          --------->TGA1a                      --------->DREB2C(2)                          --------->bZIP60(1)                  <---------MYB55(2)        ------>ZmHOX2a(2)      <---------O2                  <---------ATHB12<---------ANAC58                 <---------bZIP60(1)                  --------->MYB46(3)       --------->GLK1(1)       --------->ANAC46  ---------------- ---------At4g35610   --------->DEAR3(1)  <---------ARR11(3)       <---------ANAC55(2)  --------->ICU4 -------->At4g35610   --------->DEAR4(1)------>ZmHOX2a(1)         <-----------STF1   <--------------- >YAB1          --------->WOX13(1)<---------ANAC58               <---------ALFIN1   ------>NtERF2   -   tgagctagatttgaatgccaatcaccgacatctatttctttcctgatctcttccattaccagagagaccacgtcacagcttcactctgccatttttgaga  1249500                                                                                          ===========                                                                                          ------>ZmHOX2a(1)                                                                                          ===========                                                                                       ==============                                                                                       <------ZmHOX2a(2)                                                                                      --------->ARR14(2)                                                                                      <---------ARR11(3) ==========bZIP_DOF                                                               --------->YAB1 ->AGL1                                                                     <---------At4g35610 --AGL3                                 --------->YAB1              --------->LBD16   <---------ARR14(2) --------->DOF2                   --------->ANAC46          --------->HSFB2a(2)   <-----------GT1   acaaaagagtttcgatctaacaattggatacaataaactccataatcaagtagaaacgacttctaaaatccagaattgagcttatcacgatccttcattt  1249600                      <---------LBD16                      <---------HSFB2a(2)                  <----------DOF2             ------>ZmHOX2a(1)             ==========================HOX2a_HOX2a                       ------>ZmHOX2a(2)           ------>ZmHOX2a(2)                                            --------->CCA1(2)          <------ZmHOX2a(2)                                             --------->At4g35610         --------->ARR11(3)                    --------->ALFIN1         <------ZmHOX2a(2)         --------->AGP1                       --------->ALFIN1         --------->ARR11(3)         <---------ARR11(3)                <---------TOE2(3)           --------->AGP1         <---------ARR14(2)               ---------->DOF2              <---------ARR11(3)         --------->ARR14(2)              --------->AHL20(2)            --------->ARR14(2)        <---------GLK1(1)          --------->ANAC46                    <---------AGP1        --------->GLK1(1)          --------->ANAC58                    <---------ARR14(2)       ----------->ARR10           <---------ANAC55(2)                --------->GLK1(1)      --------->YAB1  --------->HSFB2a(2)<---------AHL20(2)           <---------GLK1(1) =================HOX2a_HOX2a      --------->ANAC58           --------->YAB1 ================HOX2a_HOX2a       --------->ANAC55(2)       <---------ATHB12            ---------->DOF2 ===================HOX2a_HOX2a <------ZmHOX2a(2)          --------->WOX13(1) --------->ZAT6   tccaacaatgagatcctagtctttctcggagacgatcacgaaattaaagttggggacattgcaatcatacagagatctgaacactaaatttgaaagtgat  1249700                                                                                         <---------ZAT2                                                                                         --------->At4g35610                                                                                         --------->ZAT2                                                                                        <---------ARR14(2)                                                                                        --------->ARR14(2)                                                                                 --------->WRKY12                                                                                 ----------->HVH21                                                                                 --------->WRKY38(1)                                                                              <---------DEAR3(1)                                                                             <------NtERF2  ------>NtERF2                                                                             --------->ATERF1(1)                                                                            ------>NtERF2<---------At4g35610                                                                            <---------ERF1  ---------                                                                            <---------RAP2.3(1)                                                                            <---------ORA47(2)                                                                           <---------ATERF1(2)                                                                           <---------DEAR3(1)                                                                           --------->ATERF1(2)              --------->ANAC55(2)                       --------->DAG2     <---------ANAC46----------              <---------ANAC55(2)                  ------>MYB83            <---------DREB2C(2)            <---------AHL20(2)                     ------>MYB46(1)         <---------RRTF1(2)   ---------->DOF2                      <------ZmHOX2a(1)                  <---------RAP2.6(2)  <---- --------->ANAC46                      ----------->GT1 ---------->DOF2     <---------RRTF1(3)<------- --------->ANAC58               --------->DAG2    ----------->RAV1(1)      <---------RAP2.3(3) ------ --------->ANAC58              ---------->DOF2   --------->AtMYB61         <---------RAP2.3(2)<------   ttcacgaaagctaattaagtgataactgagaaataaagggaaggagaaacaccaacataaagttagaaaccgaaatggcggcgatgaccagagctgccgg  1249800                                                      --------->GLK1(1)                                                     <---------ARR11(1)                                                     --------->ARR14(2)                            --                    <------NtERF2                    <---------ARR14(2)                           ---                   --------->LBD16                   ------->TEIL                                 ---                 --------->ATERF1(1)                <---------ARR14(1)                            <--                 <------NtERF2                      <---------CCA1(2)                          <----- >MYB52(1)       <---------LBD16<------ZmHOX2a(1) ------>ZmHOX2a(2)                            <----- ->HVH21        ------>NtERF2   ========================HOX2a_HOX2a        <---------AHL20(2)  <----- --NtERF2       <---------ATERF1(1)              <------ZmHOX2a(2)         --------->AHL20(2)  ------ --LBD16<---------MYB46(3)      =========================HOX2a_HOX2a    <---------ICU4         <----- --->LBD16     <---------ARR14(2)               <---------ARR11(3)     --------->ICU4          <----- ---ANAC46     --------->ARR14(2)               --------->ARR11(3)  <-----------GT1       --------->WOX13(1)   agaacgtgaatggttcggagccggagagggagaaggattgtgagaagcgagatcgtatctccaagtgtatatactaattaaaaagtttgggtcaattacg  1249900                                                                                            <--------            --------->CCA1(2)                                                               ---------      ---------->DOF2                                                                      <---------YAB1   --------->ANAC58                                                                        --------->ICU4   --------->ANAC58                                                                      --------->YAB1 ------->ZAT6                                                                           <---------YAB1 ------>ZAT14        <----------DOF2                                                    <---------AHL20(2) ------>ZAT18       <---------ANAC58                                                    --------->AHL20(2) -----TEIL<------ZmHOX2a(1)                                                         <-----------TBP ----ANAC58--------->ARR14(2)                 <---------ANAC46                      --------->AHL20(2) ----ANAC46<---------ARR14(2) <---------------AtSPL8                          <-----------TGA1 ----ANAC55(1)      <---------ANAC58        *TSS                              <-----------HVH21 --->ANAC55(2)  <---------ANAC58   --------->ANAC58                          --------->ANAC46  ------ ----ANAC55(2)  <---------ANAC58   --------->ANAC58                          --------->bZIP60(2) ----ANAC58--------->ARR11(3) --------------->AtSPL8                        ------>ZmHOX2a(1) <------   tacactagcaaaggatatgggtgcttctgtgtttagtacccaaatattaggggtacttcagaaaatagaaaactgttcctcgtcatatatataattatca  1250000                                    <---------ZAT18                                ------>ZmHOX2a(2)                               --------->ARR14(1)                               --------->CCA1(2)                               <------ZmHOX2a(2)                  <-------TEIL   <-------TEIL               --------->ARR11(3)                --------->ARR14(2)  --------->CCA1(2)           <---------ARR11(3)                <---------ARR11(3) <---------ARR14(2)       ---------->DOF2      <---------AHL20(2) ------>ZmHOX2a(2) --------->ARR14(2)   ----------->GT1       ----------->GT1     <---------ARR14(2)        --------->GLK1(2) -ICU4         ----------->GT1--------->ARR14(2)               <------ZmHOX2a(1) <-----------GT1 >YAB1       <---------ANAC58 <---------ARR14(2)            <---------LBD16   <---------ICU4 <------- --->YAB1    <---------ANAC58 --------->ARR11(1)     ---------->DOF2        <---------ARR11(3) ---YAB1     <---------ANAC46--------->RVE1(1) --------->AHL20(2)<------ZmHOX2a(2)   <---------ZAT14   gaagatacaagtcttacttgtaaatagtaaaagatccgagcacttgtagttaaataaaagtttcaggatccataacttgatatttactgaagagtctggg  1250100                       --------->AHL20(2)                     ----------->GT1             ------>ZmHOX2a(2)            <------ZmHOX2a(2)           --------->ARR14(3)           <---------AGP1           --------->ARR14(2)           <---------ARR14(2)           <---------ARR11(3)           <---------ARR14(3)         --------->MYB52(1)  --------->At4g35610--------->ANAC55(2)           --------->ARR11(3)     --------->DAG2          <---------At4g35610--------->ANAC46           --------->AGP1   ----------->GT1              ----------->RAV1(1)<---------LBD16       ---     <-----------GT1 <---------ANAC55(2)     ----------->HVH21          <----------DOF2        ------ --HSFB2a(2)--------->CCA1(2)    ---------->DOF2<---------ANAC46----------->GT1                <-----   agaaaatttacaagatctgaattatgtaaatagagaaaagtaagggtctgatgtgtaaacagcagaagataaaacttttacggagttgatttttgaagag  1250200                                        ------->MYC3           ------>MYB46(1)              <-------MYC3           ------>MYB83              <---------ALFIN1       <---------At5g28300   <---------ETT(1)      <-----------GT1       --------->DEAR3(2)                                   --------->ANAC58 ------------------>WRI1------>ZmHOX2a(1)                ----------->GT1         --------->ANAC58   < --->ARR11(3)    ------>ZmHOX2a(1)--------->ANAC46     --------->At4g35610  ---------->DOF2         < ----ARR11(3) ------>ZmHOX2a(1) --------->ANAC46  --------->YAB1        ---------->DOF2             <   cttagtatttaccatcctcctaagtcctataccgacacaacacgttttggtatcatgaactgaaaatagttgataaaagaaagaagcaaatgcaatgtaa  1250300        ----------->GT1       <---------ARR11(3)                              <----------ID1  <------MYB83 ----------->GT1--------->ARR11(3)                          <---------AHL20(2)  <------MYB46(1)         ---------->DOF2                               <---------YAB1  <---------MYB46(3)    ------->GAMYB                              ----------->GT1         <--------- ---------ANAC58     ----------->RAV1(1)                         ---------->DOF2           <--------- ---------ANAC46    --------->REM1(1)                         ----------->RAV1(1)     --------->YAB1- ---------ANAC58  <-----------GT1                            <----------ID1---------->DOF2 ----------   tggctggttattgtaaattgttacaacagaaagaactcaagggaaacaaaacttcaacaaattgcaacaaagttattaaaagaacaaatgaaaatagtac  1250400  Previous    Next  AGI:  At5g04420.1    Description:  kelch repeat-containing protein. similar to ACBP4 (ACYL-COA BINDING PROTEIN 4), acyl-CoA binding [Arabidopsis thaliana] (TAIR:AT3G05420.1); similar to ACBP4 (ACYL-COA BINDING PROTEIN 4), acyl-CoA binding [Arabidopsis thaliana] (TAIR:AT3G05420.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO68862.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Kelch repeat type 2 (InterPro:IPR011498); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 1246605    to: 1249944    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g04430.1    Description:  KH domain-containing protein NOVA, putative. similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G10070.1); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G33680.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68859.1); contains InterPro domain K Homology; (InterPro:IPR004087); contains InterPro domain K Homology, type 1; (InterPro:IPR004088) Range:  from: 1250252    to: 1253866    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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