Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <---------ICU4                                                                                ------>ZmHOX2a(1)   <                       <----------DOF2                                 <------ZmHOX2a(2)  --------->YAB1                   <---------ZAT14                           <-----------HVH21 <---------MYB59      -         --------->ZAT6<---------DAG2       --------->MYB52(1)         ================HOX2a_HOX2a  <   aaaattggccaagactacgagtttacttttggtgataacatttggcaaacgactagtttctcatgtcaaatggatcagggtcctaattttaagcatcacc  1221100                                                          --------->MYB59                                             <---------ANAC58                                             <---------ANAC58                                             <---------ANAC46         <---------ANAC46                --------->HSFC1(2)<------MYB83                             -    <-----------RAV1(1)          --------->ARR11(3)     --------->ARR14(2)                      <---- ---------GLK1(2)                <---------ARR11(3)   <XXXXXXXXXXXXXXXXXXXXMIR3440B-5P          ----- -------->ARR11(3)           ---------->DOF2<-------TEIL<---------ARR14(2)                     ------ ---------ARR11(3)   <---------ANAC46    <---------HSFC1(2)<------MYB46(1)                     <-----   tagattttgtggcatatgagacttcgtggagcaaagctcttgaagcttcgtgtaagtggataggtagagaagatggaatctatttttctcaagatggagt  1221200                                                                                                  ===                                                                                                  ---                                                                                                 ----                                        --------->DAG2       --------->ATHB12                    <---          --------->DAG2               ---------->DOF2      <---------YAB1                      <----         ---------->DOF2            --------->AtMYB61       ------>ZmHOX2a(1)                <-------      --------->AtMYB61         <---------MYB55(2)        ------>ZmHOX2a(2)                  <-------  --------->MYB46(3)            --------->MYB46(3)      --------->ARR11(3)                  <-------GAMYB  <---------MYB55(2)          ------>ZmHOX2a(1)         <---------ARR14(2)                 <---------MYB46(3) ----->ZmHOX2a(1)             ===================================HOX2a_HOX2a            <----------DOF2 -----ARR14(2)            --------->ARR14(2)            <---------ARR11(3)            <---------YAB1 ---->ARR14(2)            <---------ARR14(2)            --------->ARR14(2)           <---------ARR11(3) --->GLK1(1)             <---------GLK1(1)            ----------->ARR10              --------->ARR11(3) ----GLK1(1)             --------->GLK1(1)  <<<<<<<<<<<<<<<<<LFY --------->YAB1    <---------AHL20(2)   tcctcccaccaaaaagtaccaagatggagttcctcccaccaaaaagtaccaatgggatgatcctcattgaaaattagagttttatattatctttggttga  1221300                                                        ------->TEIL                                                    --------------->AtSPL8                                                  ------>ZmHOX2a(2)                                                <---------AGP1                                                <---------ARR11(3)                                                --------->ARR11(3) ===================HOX2a_HOX2a                 <---------ARR14(2) --->ZmHOX2a(2)                                 --------->ARR14(2)                                 -- ----->At4g35610                           <---------ANAC46              --------->DAG2         ----- ------At4g35610                          <---------AtMYB61        <---------YAB1            -------- -----AGP1                 <---------TOE2(3)   <---------CCA1(2) --------->YAB1      <---------AHL20(2) -P                        <---------TOE1(3)  <---------MYB46(3)<---------YAB1      --------->AHL20(2) --WOX13(1)  ------>ZmHOX2a(1)          <----------DOF2<-----------GT1  ---------->DOF2      <-------   tctgaagaattggtcctcatatgaaaattagggttttatattctttggtggatctttgtacctcttattatgaataaagttatcgataaaattttcttta  1221400                                                              --------->ARR11(3)                                                          ---------->DOF2                                                      <---------ANAC55(2)                                                      --------->ANAC55(2)                                                      <---------ANAC58                                                      <---------ANAC58                                                      <---------ANAC46     <---------ICU4                                   <---------ANAC55(1)     --------->HSFB2a(1)                        ----------->TBP--------->CCA1(2) --------->MYB46(3)               <------ZmHOX2a(1)  <-------TEIL ------->YAB1             <----------DOF2       --------->AHL20(2)                                  - ---->YAB1                --------------->AGL15 <---------AHL20(2)                           -------- ->TOE2(3)            --------->GLK1(1)       ----------->TBP <---------ARR11(3)       ----------->GT1 ---DOF2              <---------GLK1(1)  ----------->GT1----------->HVH21          ---------->DOF2  <   ataacaaacattccattgatatggatttctttgaaaggataagtagttatataaatacgtgaaagatataagaaatttgagggactaaagagcaaaaata  1221500                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                           ----------               --------->MYB52(1)            --------->WOX13(1)                          <---------ARR14(2)             --------->MYB46(3)            <---------YAB1                           -------->P <----- <---------RVE1(1)                        --------->TOE2(3)                         ------>MYB83 <---------CCA1(1)            --------->At4g35610                                   ------>MYB46(1) -------->ARR11(3)            ----------->RAV1(2)                                 --------->AtMYB61 ->AHL20(2)  <---------MYB52(2)*TSS      --------->YAB1    >>>>>>>>>TBF1    ----------->HVH21 <------ ---------ARR11(3) <-----------HVH21    <---------YAB1  >>>>>>>>>TBF1 ----------->HVH21  --------->ARR14(2)   tagatattttgaagaacaaacggtcgaagaacatctgaaactatcatcaatcggagaagaagaagaatggcactgacactgacaccaacaagttccgttc  1221600                                                                              ------>NtERF2                                                                              <---------DEAR3(2)                                                                            <------NtERF2                                                                           <---------SPL7                                                                           <---------ATERF1(1)                                                                          <---------DEAR3(1)                                         ------>NtERF2                  <-----------HVH21                                         <---------At4g35610           --------->O2                                 <---------HSFB2a(1)                   --------->bZIP60(2)                                 <---------GLK1(1)                     <---------TGA1a                                 --------->GLK1(1)                     --------->DEAR3(1)                                 --------->HSFB2a(1)                   <---------bZIP60(2)                                 <----------TaMYB80                    <---------bZIP60(1)                                 <------ZmHOX2a(2)                     --------->bZIP60(1)                                <---------ARR11(3)                     <---------O2                                <---------ARR14(2)                     --------->TGA1a                                --------->ARR11(3)                    <------NtERF2                                <---------ARR11(1)                    --------->ATERF1(1)                                <-----------ARR10                    <---------ATERF1(1)--------->TOE2(3)                            =============HOX2a_HOX2a                 ------>NtERF2     --------->bZIP60(1)                            <---------LBD16                         ----------->HVH21  <---------bZIP60(1)                            ------>ZmHOX2a(1)                      --------->ATERF1(1) --------->ANAC58                     <---------ANAC58    --------->At4g35610       <------NtERF2       <---------ANAC55(2)                     <---------ANAC46   --------->DEAR3(1)       <---------DEAR3(1)    --------->ANAC55(2)                     <---------ANAC58--------->ANAC46            --------->ALFIN1      <---------ANAC46 -ANAC58         <-----------HVH21------>ZmHOX2a(2)             <---------ABI4(1)   <---------MYB52(1) -ANAC58        --------->ANAC46--------->ARR14(2)            <---------DEAR3(1)   <-----------HVH21 -ANAC46     --------->ARR14(2)<---------CCA1(2)             <---------LBD16--------->ATERF1(1) ----->AtSPL3<---------ARR14(2)<---------ARR14(1)           ------>ZmHOX2a(2)<---------DEAR3(1) --TEIL     <---------GLK1(1)--------->TOE2(1)  --------->AHL20(2)------>NtERF2<------NtERF2 ---MYB52(1)<---------CCA1(2)--------->TOE1(1)  <---------AHL20(2)<---------ATERF1(1)  --------->ANAC58   atcttctcagttccatatccgtcgcgcgtcctcggatcttcgccgctgattttaatcttcgatcgcggtggcgacgtcgtcggcctgttacgtcaatttc  1221700                                                                        <-----------HVH21                                                                       <-----------RAV1(1)                                                                     ------>ZmHOX2a(1)                                                                <---------At4g35610                                 <---------ZAT14              --------->REM1(1)                                 --------->ZAT14            <----------DOF2    <---------ANAC58            <----------DOF2           <---------At4g35610    <---------ANAC58 --------->HSFB2a(2)                  --------->At4g35610                       <   taacttccgtctcagacttccttcgaaaacttcgcttcactgtctctgttcttcgtcttccgcttcatctcctatgtcgctcgaagtctccagtcccaat  1221800                                                                          <---------ANAC46       <-----------GT1                     --------->YAB1           <---------TOE2(3)               -      <-----------GT1                     <------ZmHOX2a(2)         <---------TOE1(3)              <- <---------TOE1(2)                     ------>ZmHOX2a(2)           <-----------GT1               <--- <---------TOE2(2)                <--------P                  <----------DOF2                    <--- -----------RAV1(2) <-----------GT1<-------TEIL <-----------GT1   <-----------GT1           ---------   tctcaggtttacccctcttaattttcgagctagaaggttgatcgatcatgttactggttttgctctttttaacgttttgtgtcaaaattttggtcagttt  1221900                                                 <---------AtLEC2                                                 <---------ANAC58                                                 <---------ANAC58         --------->ARR11(3)      ---  <---------WOX13(1)                             <---------ANAC46   <---------REM1(1)        -------- -------->ATHB12         --------->ARR14(2)   <---------WOX13(1)  <------MYB46(1)        --------->ANAC46 --------YAB1            <---------ARR14(2) --------->ATHB12      <---------MYB46(3)     --------->ANAC55(2) ------ANAC58         <---------ANAC58   <---------ANAC58         <------MYB83----------->GT1-------- ------ANAC58         <---------ANAC58   <---------ANAC58     <-----------RAV1(1)   <----------DOF2 >MYB52(2) ------>ZmHOX2a(2)             <---------ANAC46     <---------MYB46(3) <-----------GT1 ----   cttgattgtttgatctattcaagagcgtattgggttacccaaggcgtgattgcatggaatgtggatgttggtgaagggtcttgttacttttacgcgagca  1222000  Previous    Next  AGI:  At5g04350.1    Description:  self-incompatibility protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04347.1); similar to self-incompatibility [Papaver nudicaule] (GB:CAA06689.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264) Range:  from: 1220830    to: 1221270    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g04360.1    Description:  ATLDA/ATPU1 (PULLULANASE 1); alpha-amylase/ limit dextrinase. similar to ATISA3/ISA3 (ISOAMYLASE 3), alpha-amylase [Arabidopsis thaliana] (TAIR:AT4G09020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68873.1); similar to H0806H05.4 [Oryza sativa (indica cultivar-group)] (GB:CAC09471.2); similar to pullulanase [Spinacia oleracea] (GB:CAA58803.1); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193); contains InterPro domain Alpha-1,6-glucosidases, pullulanase-type; (InterPro:IPR011839); contains InterPro domain Immunoglobulin E-set (InterPro:IPR014756); contains InterPro domain Glycosyl hyd Range:  from: 1221531    to: 1228612    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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