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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
<-------
GAMYB
--------->
MYB111(1)
--------->
MYB46(2)
<---------
MYB46(3)
--------->
MYB111(2)
--------->
MYB55(2)
<---------------
AGL15
--------->
MYB52(2)
--------------->
AGL15
<---------
AHL20(2)
<---------
MYB52(1)
----------->
GT1
--------->
ANAC58
--------->
GLK1(2)
<---------
TOE2(3)
------------>
MYB.PH3(2)
<---------
GLK1(2)
--------->
TOE2(3)
----------->
GT1
---------->
DOF2
agaagttgtcttcttgagagagaatcgttgagtttt
ctacattaagaaacagagcatgttaaaatgttagttgggaaagaaacagagaagattgctctgt
1207000
--------->
YAB1
<---------
YAB1
--------->
YAB1
<---------
YAB1
--------->
YAB1
<---------
ICU4
<--------
HAHB4
<---------
YAB1
---------->
DOF2
<---------
ICU4
<----------
DOF2
<---------
ANAC55(2)
--------->
ICU4
<---------
DAG2
<---------
ANAC58
<---------
YAB1
--------->
MYB52(1)
<-------
TEIL
<---------
ANAC58
<---------
YAB1
--------->
YAB1
--------->
CCA1(2)
<-----------------------
TaNAC69(2)
ttctgatattgtcattatcattataagaataacagaggttttaaagattcaaacttttttgaaattttagttggattacttgagaatgagaaagacccac
1207100
----------->
GT1
--------->
DAG2
--------->
AHL20(2)
<-
--------->
TOE2(3)
--------->
AHL20(1)
<-
--------->
DAG2
--------->
TOE1(3)
<---------
AHL20(2)
<-----------
GT1
---------
---------->
DOF2
------->
TEIL
--------->
AHL20(2)
---------->
DOF2
--------->
YAB1
<---------
LBD16
aagataaagcatgaaaatgaatcaaacccttaaatgaaatcaaataaaatgtaagagaaaagttatac
ctttgaacattaagaacaacatgttcagggaa
1207200
--------->
ALFIN1
--------->
ALFIN1
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
<------
MYB46(1)
<------
MYB83
<---------
AtMYB61
<--------
P
<-------
GAMYB
<-------
TEIL
--------->
ALFIN1
<--------
P
<-----------
RAV1(1)
<---------
AtMYB61
--------
ANAC58
<---------
TOE2(3)
--------
ANAC58
--------->
ATHB12
<---------
TOE1(3)
>
LBD16
<-----------
RAV1(1)
--------->
At4g35610
----------->
GT1
tgggtgttggtgtgggagagaaagattgaagatagatgctgaggttgatgatgctcttccatggtgagagagagaaaccaagaggcaaaaccagataatg
1207300
--------->
YAB1
--------->
ARR11(3)
------>
ZmHOX2a(1)
<---------
ARR11(3)
<---------
MYB46(3)
------>
ZmHOX2a(1)
<---------
CCA1(2)
<------
MYB46(1)
------>
ZmHOX2a(2)
<---------
AHL20(2)
<------
MYB83
=====================================
HOX2a_HOX2a
<---------
TOE2(2)
=============
HOX2a_HOX2a
--------->
YAB1
<---------
MYB52(1)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
At4g35610
------->
MYC2
--------->
ARR14(2)
<---------
ARR11(3)
--------->
ZAT2
<-------
MYC3
------->
TEIL
<---------
CCA1(2)
---------->
DOF2
<-------
MYC2
<---------
ARR14(2)
--------->
AHL20(2)
<---------
YAB1
------->
MYC3
<---------
TOE2(3)
------>
NtERF2
------>
ZmHOX2a(1)
--------->
At4g35610
------->
TEIL
--------->
ARR11(3)
--------->
MYB46(3)
--------->
AHL20(2)
----------->
RAV1(1)
caaatgcacgttggtttttgaagattatggatcctcctctcatgagccaccat
tatatctcctattatatcttatgaaaagaccagcagaattagaaact
1207400
<---------
ANAC58
<---------
ANAC58
<---------
ANAC58
--------->
AHL20(2)
<---------
ANAC46
--------->
YAB1
--------->
AHL20(2)
<----------
DOF2
<---------
AHL20(2)
--------->
AHL20(1)
------>
ZmHOX2a(1)
<------------
CBF
<---------
AHL20(1)
<-
--------->
TOE2(3)
<------------
CBF
--------->
AHL20(2)
<---------
AHL20(2)
------>
ZmHOX2a(1)
--------->
TOE1(3)
<---------------
ANT
<-----------
TBP
--------->
AHL20(2)
-----------
<---------
ARR11(3)
<---------
LBD16
----------->
GT1
---------->
DOF2
<---------
ANAC58
--
caagttccttaaatatgggtttatggggaattgtgcaaattgggttatataataaactagggccaaaagaattttatttgtgtgtttgccttcctacata
1207500
--------->
DAG2
---------->
DOF2
------>
ZmHOX2a(1)
--------->
ARR14(2)
--------->
GLK1(2)
----------->
GT1
<-----------
HVH21
--------
ARR11(3)
---------->
DOF2
----------->
HVH21
--------->
TOE1(3)
---------->
WRI1
--------->
ALFIN1
---------->
DOF2
---------->
DOF2
--------->
TOE2(3)
------->
ARR11(3)
------------------------>
ANAC81
--------->
ALFIN1
<---------
ARR14(2)
gtatctctctctaatctctctagtttgtttcaagtggaagaaaagaaaattagagagaaagagagagtgtgtgaaaggggtcagagaatccttaaagtgc
1207600
--------
<-------
<-------
<-------
<-------
<-------
<-------
---------
<---------
TGA2(2)
--------->
ANAC46
--------->
YAB1
-----
<---------
YAB1
<-----------
GT1
-----------
------------>
CBF
<---------
ANAC58
--------->
ANAC58
<----------
DOF2
<---------
ANAC58
--------->
ANAC58
<---------
DAG2
<----------
DOF2
<---------
ZAT14
<---------
ATHB12
-----
--------->
YAB1
<---------
ALFIN1
<---------
GLK1(2)
--------->
ZAT14
--------->
WOX13(1)
<----
ttaatcaaaactatttctcccacctttctccaatctgattcttacttttgtaagagtgactcagtttacttgaattacccaatcatccacgtatgacgta
1207700
->
ANAC55(2)
--
ANAC58
--
ANAC58
--
bZIP60(2)
<---------
TOE2(3)
--
ANAC55(1)
--------->
LBD16
--
ANAC55(2)
--------->
ANAC55(2)
--
ANAC46
<---------
ANAC55(2)
-->
STF1
<-----------
HVH21
<---------
ATHB51
---->
ARR14(2)
<----------
DOF2
--------->
ANAC46
<---------
ANAC58
>
HVH21
<---------
DAG2
<---------
LBD16
--------->
YAB1
<------
-->
TEIL
<---------
DAG2
<---------
At4g35610
<-----------
HVH21
<---------
ATHB12
--------
-----
ARR14(2)
<----------
DOF2
--------->
At4g35610
--------->
YAB1
<---------
ATHB12
<---------
ANAC58
tccctctctctaaaacaacttttctatggatttagcagcctttttatatgtcactgatcacgggataaatcaataatgtagtttgcgttataaacatgca
1207800
--------->
ANAC58
--------->
ANAC58
--------->
TOE1(3)
<---------
At4g35610
------
--------->
TOE2(3)
--------->
At4g35610
---------
-
TEIL
<-------
TEIL
<---------
ICU4
<---------
ARR14(2)
<---------
MYB52(1)
<
->
AtLEC2
--------->
AtLEC2
-------->
P
--------->
ARR14(2)
<---------
GLK1(1)
<--------
tataaaacttagaccaaaaaaacatgcatataaaacaatacttaccttgacgaaaatactcgatgcagcgcaagaattctcttagtttttgaaagattta
1207900
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AGI:
At5g04310.1
Description:
pectate lyase family protein. similar to PMR6 (POWDERY MILDEW RESISTANT 6), lyase/ pectate lyase [Arabidopsis thaliana] (TAIR:AT3G54920.1); similar to pectate lyase-like protein [Brassica napus] (GB:AAQ87025.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectate lyase/Amb allergen (InterPro:IPR002022); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050)
Range:
from: 1203204
to: 1207353
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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