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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                         --------->ANAC58
                                                                 <-------GAMYB
                                                                --------->MYB111(1)
                                                                --------->MYB46(2)
                                                                <---------MYB46(3)
                                                                --------->MYB111(2)
                                                                --------->MYB55(2)
                                 <---------------AGL15          --------->MYB52(2)
                                 --------------->AGL15  <---------AHL20(2)
                       <---------MYB52(1)           ----------->GT1      --------->ANAC58
                   --------->GLK1(2)    <---------TOE2(3)    ------------>MYB.PH3(2)
                  <---------GLK1(2) --------->TOE2(3)----------->GT1   ---------->DOF2
 
agaagttgtcttcttgagagagaatcgttgagttttctacattaagaaacagagcatgttaaaatgttagttgggaaagaaacagagaagattgctctgt  1207000
                    --------->YAB1
                   <---------YAB1
                 --------->YAB1
                <---------YAB1
              --------->YAB1
              <---------ICU4
              <--------HAHB4
             <---------YAB1                                                           ---------->DOF2
           <---------ICU4                         <----------DOF2         <---------ANAC55(2)
          --------->ICU4                          <---------DAG2          <---------ANAC58
          <---------YAB1  --------->MYB52(1)<-------TEIL                  <---------ANAC58
       <---------YAB1  --------->YAB1      --------->CCA1(2)             <-----------------------TaNAC69(2)
 
ttctgatattgtcattatcattataagaataacagaggttttaaagattcaaacttttttgaaattttagttggattacttgagaatgagaaagacccac  1207100
                                                        ----------->GT1
                                                       --------->DAG2
                                         --------->AHL20(2)                                       <-
                        --------->TOE2(3)--------->AHL20(1)                                       <-
  --------->DAG2        --------->TOE1(3)<---------AHL20(2)  <-----------GT1               ---------
 ---------->DOF2------->TEIL        --------->AHL20(2)---------->DOF2      --------->YAB1<---------LBD16
 
aagataaagcatgaaaatgaatcaaacccttaaatgaaatcaaataaaatgtaagagaaaagttatacctttgaacattaagaacaacatgttcagggaa  1207200
        --------->ALFIN1
      --------->ALFIN1
      <---------ANAC58
      <---------ANAC46
      <---------ANAC58
    <------MYB46(1)
    <------MYB83
   <---------AtMYB61
  <--------P
 <-------GAMYB                           <-------TEIL
--------->ALFIN1                        <--------P
<-----------RAV1(1)                  <---------AtMYB61
--------ANAC58                       <---------TOE2(3)
--------ANAC58     --------->ATHB12  <---------TOE1(3)
>LBD16<-----------RAV1(1)        --------->At4g35610                           ----------->GT1
 
tgggtgttggtgtgggagagaaagattgaagatagatgctgaggttgatgatgctcttccatggtgagagagagaaaccaagaggcaaaaccagataatg  1207300
                                    --------->YAB1              --------->ARR11(3)
                                 ------>ZmHOX2a(1)              <---------ARR11(3)
        <---------MYB46(3)    ------>ZmHOX2a(1)                <---------CCA1(2)
        <------MYB46(1)     ------>ZmHOX2a(2)                 <---------AHL20(2)
        <------MYB83        =====================================HOX2a_HOX2a
       <---------TOE2(2)   =============HOX2a_HOX2a          --------->YAB1
      <---------MYB52(1)   <------ZmHOX2a(2)        --------->ARR11(3)           <---------At4g35610
     ------->MYC2         --------->ARR14(2)        <---------ARR11(3)           --------->ZAT2
     <-------MYC3         ------->TEIL             <---------CCA1(2)     ---------->DOF2
     <-------MYC2         <---------ARR14(2)     --------->AHL20(2)   <---------YAB1
     ------->MYC3      <---------TOE2(3)    ------>NtERF2 ------>ZmHOX2a(1)      --------->At4g35610
   ------->TEIL    --------->ARR11(3)     --------->MYB46(3) --------->AHL20(2) ----------->RAV1(1)
 
caaatgcacgttggtttttgaagattatggatcctcctctcatgagccaccattatatctcctattatatcttatgaaaagaccagcagaattagaaact  1207400
                                                                                    <---------ANAC58
                                                                                    <---------ANAC58
                                                                            <---------ANAC58
                                                 --------->AHL20(2)         <---------ANAC46
                                              --------->YAB1         --------->AHL20(2)
               <----------DOF2               <---------AHL20(2)      --------->AHL20(1)
    ------>ZmHOX2a(1)             <------------CBF                   <---------AHL20(1)           <-
   --------->TOE2(3)     <------------CBF   --------->AHL20(2)       <---------AHL20(2)   ------>ZmHOX2a(1)
   --------->TOE1(3)<---------------ANT  <-----------TBP            --------->AHL20(2)   -----------
<---------ARR11(3)  <---------LBD16   ----------->GT1        ---------->DOF2<---------ANAC58      --
 
caagttccttaaatatgggtttatggggaattgtgcaaattgggttatataataaactagggccaaaagaattttatttgtgtgtttgccttcctacata  1207500
                                                                                          --------->DAG2
                                                                                         ---------->DOF2
                                                                                       ------>ZmHOX2a(1)
                                                                                   --------->ARR14(2)
                                                                                   --------->GLK1(2)
                                       ----------->GT1                     <-----------HVH21
--------ARR11(3)                     ---------->DOF2               ----------->HVH21  --------->TOE1(3)
---------->WRI1               --------->ALFIN1       ---------->DOF2 ---------->DOF2  --------->TOE2(3)
------->ARR11(3)              ------------------------>ANAC81  --------->ALFIN1    <---------ARR14(2)
 
gtatctctctctaatctctctagtttgtttcaagtggaagaaaagaaaattagagagaaagagagagtgtgtgaaaggggtcagagaatccttaaagtgc  1207600
                                                                                            --------
                                                                                            <-------
                                                                                            <-------
                                                                                            <-------
                                                                                            <-------
                                                                                            <-------
                                                                                            <-------
                                                                                           ---------
                                                                                          <---------TGA2(2)
                                                                                     --------->ANAC46
                                                                               --------->YAB1  -----
                               <---------YAB1                          <-----------GT1   -----------
                         ------------>CBF                       <---------ANAC58     --------->ANAC58
                    <----------DOF2                             <---------ANAC58     --------->ANAC58
                   <---------DAG2        <----------DOF2     <---------ZAT14  <---------ATHB12 -----
 --------->YAB1 <---------ALFIN1 <---------GLK1(2)           --------->ZAT14--------->WOX13(1) <----
 
ttaatcaaaactatttctcccacctttctccaatctgattcttacttttgtaagagtgactcagtttacttgaattacccaatcatccacgtatgacgta  1207700
->ANAC55(2)
--ANAC58
--ANAC58
--bZIP60(2)                                                            <---------TOE2(3)
--ANAC55(1)                                              --------->LBD16
--ANAC55(2)                                             --------->ANAC55(2)
--ANAC46                                                <---------ANAC55(2)
-->STF1                                      <-----------HVH21       <---------ATHB51
---->ARR14(2)                       <----------DOF2     --------->ANAC46         <---------ANAC58
>HVH21                             <---------DAG2      <---------LBD16--------->YAB1         <------
-->TEIL        <---------DAG2 <---------At4g35610   <-----------HVH21<---------ATHB12       --------
-----ARR14(2)  <----------DOF2--------->At4g35610  --------->YAB1<---------ATHB12<---------ANAC58
 
tccctctctctaaaacaacttttctatggatttagcagcctttttatatgtcactgatcacgggataaatcaataatgtagtttgcgttataaacatgca  1207800
                                                                    --------->ANAC58
                                                                    --------->ANAC58
                                         --------->TOE1(3)     <---------At4g35610            ------
                                         --------->TOE2(3)     --------->At4g35610         ---------
-TEIL                <-------TEIL  <---------ICU4  <---------ARR14(2)        <---------MYB52(1)    <
->AtLEC2            --------->AtLEC2   -------->P  --------->ARR14(2)  <---------GLK1(1)   <--------
 
tataaaacttagaccaaaaaaacatgcatataaaacaatacttaccttgacgaaaatactcgatgcagcgcaagaattctcttagtttttgaaagattta  1207900
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AGI:  At5g04310.1   
Description:  pectate lyase family protein. similar to PMR6 (POWDERY MILDEW RESISTANT 6), lyase/ pectate lyase [Arabidopsis thaliana] (TAIR:AT3G54920.1); similar to pectate lyase-like protein [Brassica napus] (GB:AAQ87025.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectate lyase/Amb allergen (InterPro:IPR002022); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050)
Range:  from: 1203204    to: 1207353    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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