Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       <---------At4g35610                       <-------GAMYB                       --------->At4g35610                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      --------->ANAC58                          <---------ANAC58                      --------->ANAC58                         <xxxxxxxxxxxxxxxxsmallRNA(s)                    --------->TGA2(2)                       xxxxxxxxxxxxxxxx>smallRNA(s)                   <-----------HVH21                       xxxxxxxxxxxxxxxx>smallRNA(s)                   --------->TOE2(3)                      xxxxxxxxxxxxxxxx>smallRNA(i)                   <-----------TGA1                       <-------TEIL                  --------->ANAC58                       xxxxxxxxxxxxxxxx>smallRNA(s)                  --------->O2                           --------->CCA1(2)                  <---------O2                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  --------->ANAC58                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  --------->bZIP60(2)                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                <---------DOF5.7(2)                   xxxxxxxxxxxxxxxx>smallRNA(s)              <------NtERF2                          xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------ATERF1(1)                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->ANAC46                        xxxxxxxxxxxxxxxx>smallRNA(s)           <---------LBD16                          xxxxxxxxxxxxxxxx>smallRNA(i)           --------->LBD16                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------ANAC58                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          <---------ANAC58                        <---------YAB1<---------ANAC58         ---------->DOF2          <---------ANAC46                      <---------At4g35610     --------->ICU4  <---------AHL20(2)         <---------LBD16                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------AHL20(2)     <-----------RAV1(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(i)   =========================bZIP_DOF         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     --------->AHL20(2)   <----------DOF2--------->TGA1a     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    ---------->DOF2    ---   ttgtgctttgttgcgcggcaacgtcagcaacgattttagacttctacttctgatgagagatacagtgcgttgccatgttgaaaaagaaattaaaaggaaa  1160400                                                                                       ---------->DOF2                                                                                    <---------HSFB2a(2)                                                                                    --------->HSFB2a(2)                      ----------->GT1                                         <---------ARR11(3)                     ----------->GT1                                          --------->ARR11(3)    < ------>YAB1    ---------->DOF2           ----------->GT1                    <---------CCA1(2)     <-   acataacacattatacgagaaagaagtttaaaaaaaaaaaaaactggttgaaactaatcgaatatttgaagcattttttatatctactagaaagtaagtt  1160500                              <---------ICU4                             <---------YAB1                             --------->ICU4                           <---------ICU4                           --------->YAB1                       ------>ZmHOX2a(1)                  --------->KAN4(2)                 --------->KAN4(1)          --------->ZAT6                <---------KAN4(2)  --------->AHL20(2) --------->ARR11(3)             <------------CBF ---------AHL20(2)--------->YAB1<---------YAB1  --------->YAB1   <---------ICU4   ------->GAMYB --------AHL20(2)<---------KAN4(1)<---------AHL20(2)  <---------ARR11(3)       <-----------GT1      -   ttttaatggctaaaaacgaataatcctattcattattttaaatcaaacactaataagatgttcttaaacatttcaactagttaaccccattgttttccct  1160600               --------->ANAC58               --------->ANAC46  <---------ATHB12           ------>MYB83        ------>MYB46(1)           ------>MYB46(1)   ------->GAMYB          --------->ANAC46 --------->ANAC58                                               --------->YAB1         <---------MYB55(2)--------->ANAC46                                               <---------ICU4         --------->MYB46(3)--------->ANAC58                                           <---------AHL20(2)        --------->ANAC46   ------>MYB83                                             ----------->TBP      <-----------GT1      -------->P                                          <---------ARR11(3)  <---------AHL20(2)       ------>MYB46(1)             <-------MYC3            --------->ARR11(3)  ----------->TBP        --------->AtMYB61             ------->MYC3       ----------->TBP<---------YAB1  --------->AHL20(2)    --------->MYB46(3)     <---------AHL20(2)      --------->ETT(2)--------->YAB1 ---------->TBP--------->ANAC58------>MYB83--------->AHL20(2)<-----------GT1  <---------CCA1(2)   ctatatatatacccaccaaggcacaaaccaacccactcactcacattatttaaaacacatgttttactacttgtctacatatatctatataatcatcgta  1160700                                                       ----------->TBP                                                       --------->AHL20(2)                                                       <---------AHL20(2)                                                     ----------->TBP                                                     --------->AHL20(2)                                                     <---------AHL20(2)                                                   --------->AHL20(2)                                                   <---------AHL20(2)                                                   ----------->TBP                                                 <---------AHL20(2)                                                 --------->AHL20(2)                                                 ----------->TBP                                               <---------AHL20(2)                                               --------->AHL20(2)                                               ----------->TBP                                             ----------->TBP              ----------->GT1                                             <---------AHL20(2)       --------->LBD16                                             --------->AHL20(2)     <---------LBD16                                           --------->AHL20(2) --------->YAB1                                           ----------->TBP <---------CCA1(2)                                          <---------AHL20(1)  --------->TOE2(3)                  <---                 --------->At4g35610      <---------ARR11(3)<---------ARR11(3)     ---------->DOF2             ------>NtERF2                --------->ARR11(3)--------->ARR11(3)   <---------AHL20(2)--   gaaatcgatacttgaggccagcccaaaatcacactcgagtcgaatatatatatatatatatatatcttaatccggctcgttatataaaagctccagactt  1160800                                                                                                    -                                                                                                <----                                                                                           <------NtERF2                                                   --------->MYB52(1)                     <---------ATERF1(1)                 <---------GLK1(2)                 ----------->RAV1(1)                   <---------ANAC46             <------NtERF2                      --------->ANAC46                         <---------DEAR3(1)            <-----------HVH21                   --------->ANAC58                         --------->ALFIN1            ------>NtERF2                       --------->ANAC58         --------->MYB52(1)--------->ATERF1(1)            <---------RAP2.6(3)               ------>MYB46(1)           --------->ZAT14 <---------LBD16           --------->ATERF1(2)                --------->MYB52(1)        <---------ZAT14 <------NtERF2           <---------ATERF1(2)                ------>MYB83            --------->ANAC46  --------->ATERF1(1)       <--------P--------->ARR11(3)          --------->MYB55(1)      ------>MYB46(1)   <---------RAP2.3(1)      <-------GAMYB                         ------->GAMYB            ------>MYB83     <---------RRTF1(3)    <---------TOE2(3)     --------->ICU4    --------->AtMYB61       <---------ALFIN1  <---------RAP2.6(2)  --------->STY1(1)       <---------YAB1   --------->MYB46(3)    --------->PCF2       <---------RAP2.3(2) --------HVH21   <---------ARR14(2)      --------->WOX13(1)   <---------At4g35610     <---------DEAR3(1) ------->ZAT6<---------MYB52(1)      <---------ANAC46 ------->GAMYB--------->MYB46(3)<---------At4g35610   gtcactagggttgccgtcagattttgtgatcatggagtttcgtcaaccaaacgcaacagcattgagcgacccacttaactggaatgtagcggcggaggct  1160900                                                                                                 <---                    ----------->GT1                           <---------At4g35610                <---                   --------->ALFIN1                           --------->ZAT2                     <---           --------->ZAT2                                     --------->At4g35610         <----------           <---------ZAT2                                     <---------ZAT2    ------>NtERF2    <---           ----------->RAV1(2)                             <---------ZAT14     --------->WRKY45  <---           --------->O2                           --------->ANAC58             --------->WRKY38(1) <-          ------>NtERF2                           --------->ANAC58    <------NtERF2 --------->MYB52(1)         <---------ALFIN1                       ---------->DOF2     <---------DEAR3(1)   <---------MYB52(1)        --------->ATERF1(1)                    <------ZmHOX2a(1)   <---------LBD16--------->MYB46(3)       <---------ATERF1(1)               <---------YAB1    --------->ZAT14     --------->WRKY12------      --------->PCF2--------->At4g35610<------ZmHOX2a(1)   --------->ABI4(2) --------->At4g35610<---- --------->DOF2   <------ZmHOX2a(1)  <---------TOE1(3)    --------->ALFIN1--------->CCA1(2)   <------ ------DOF2<---------O2           <---------REM1(1)  --------->MYB52(1)----------->ARR10<-----------HVH21   ttaaaagggagccacctggaggaggtgaagaagatggtgaaggattataggaaaggaacggtgcagctaggcggagagacgctgaccatcggtcaggttg  1161000      <---------ANAC58                                ----------->HVH21      <---------ANAC46                              --------->ALFIN1      <---------ANAC58                              <---------ANAC46 ------ANAC58                                      <------NtERF2 ------ANAC58                 <----------DOF2     <---------DEAR3(2) ------RAP2.3(2)        --------->ALFIN1         --------->ALFIN1 -RAV1(2) --------->ALFIN1  <---------At4g35610  <---------DEAR3(1) ------RAP2.6(2)   ----------->RAV1(1)           <---------AtMYB61 ------ANAC46     ----------->HVH21             ------>NtERF2 -----NtERF2      --------->DREB2C(2)           <---------ABI4(1) --->ALFIN1      --------->DEAR3(2)         ---------->CDC5                ----------->HVH21     ---- -----LBD16    <------ZmHOX2a(1)      <------ZmHOX2a(1)            ----------->HVH21        --------- --P <-----------------------TaNAC69(2)  --------->ATERF1(1)<---------ANAC46              ------->TEIL   cggcagtagcgagtggaggaccgacagtggagctttctgaggaggctcggggcggtgtgaaggcgagtagtgactgggtgatggagagcatgaaccgtga  1161100                                                                                      <------MYB46(1)                                                                                      ----------->GT1                                       <---------HSFB2a(2)                            <------MYB83                            <------MYB46(1)                  <---------At4g35610      <---------ANAC55(2)                            <------MYB83           ----------->HVH21         --------->ARR11(3)                        <---------ARR14(2)      <------ZmHOX2a(1)        ---------->DOF2           --                        --------->ARR14(2)   <------ZmHOX2a(1)  <---------At4g35610   --------->ANAC55(2) ----->CCA1(2)    <---------ALFIN1     --------->HSFB2a(2)   --------->At4g35610     --------->MYB59 -->GT1       <------ZmHOX2a(2)<-------TEIL<---------TOE1(2)--------->ALFIN1 <---------ARR11(3)   <--   tacggacacatatgggatcaccactggatttggttcatcttctcgtaggaggactgaccaaggtgctgctcttcaaaaagagcttattaggtaattcata  1161200                      <---------AHL20(2)                  <-------TEIL                     --------->AHL20(2)                 --------->LBD16                     <---------AHL20(2)               --------------->AtSPL3                   <----- ------->YAB1 --------->ANAC58                        --------------->AtSPL8                 <------- -----TEIL    --------->ANAC58 --------->YAB1      <---------GLK1(1)          ---------->DOF2--------   ttcatagttgaatcagacgaaaaataaatagaatcatagaaaactaggtttagaaacccgtacataaactagtttttttaaaaaggaatgcatatttata  1161300  Previous    Next  AGI:  At5g04230.1    Description:  PAL3 (PHENYL ALANINE AMMONIA-LYASE 3); phenylalanine ammonia-lyase. Identical to Phenylalanine ammonia-lyase 3 (PAL3) [Arabidopsis Thaliana] (GB:P45725;GB:Q53YP2;GB:Q9FYD8); similar to PAL2 (phenylalanine ammonia-lyase 2), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT3G53260.1); similar to PAL1 (PHE AMMONIA LYASE 1), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT2G37040.1); similar to phenylalanine ammonia-lyase, putative [Arabidopsis thaliana] (TAIR:AT3G10340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62101.1); similar to phenylalanine ammonia-lyase 1 [Manihot esculenta] (GB:AAK62030.1); simila Range:  from: 1160832    to: 1163776    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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