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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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1        10        20        30        40        50        60        70        80        90        100 
                             --------->ANAC46
                             --------->ANAC58
                             --------->ANAC58
                      --------->MYB46(3)
                    <---------DOF5.7(2)
                  --------->DOF5.7(2)
                 --------->TOE2(3)
                 --------->TOE1(3)
               <---------TOE2(2)                        --------->TOE2(3)
               <---------TOE1(2)             <---------YAB1
              ------>ZmHOX2a(1)            --------->AHL20(2)
             --------->TOE1(2)             --------->ATHB51                      <---------GLK1(1)
------DOF2   --------->TOE2(2)             <---------AHL20(2)  ----------->GT1----------->GT1 ------
 
ttcattagattgttatcctacgttaacaatccaagccaactctgaattattttttatattcttaaacagaaaaatcaaaaatggaaataccatagaagag  931500
                                                                                               -----
                                                                                               <----
                                                                                         --------->ANAC58
                                                                                         <---------bZIP60(1)
                                                                                         --------->ANAC58
                                                                                    --------->ANAC55(2)
                                                                                    <---------TGA1a
                                                                                    <---------ANAC58
                                                                                    <---------ANAC55(2)
                                                    <---------ANAC46                <---------O2
                                          <---------AHL20(1)                        --------->TGA1a
                                          <---------AHL20(2)                        --------->O2
                               --------------->AtSPL8 --------->ANAC55(2)           ================
                         <---------ZAT6   --------->AHL20(2)          <---------ANAC58----------->TGA1
                <---------AHL20(2) ------->TEIL <---------ANAC58 --------->YAB1     <---------ANAC58
               --------->AHL20(2)  <-------TEIL <---------ANAC58<---------YAB1<---------AtMYB61<----
----->GT1    --------->YAB1    <---------------AtSPL8 --------->ANAC46<---------ANAC58----------->HVH21
 
caaatagacattacaaaaataaatcgtactgttgaatgtacataaaaaatttcttacgcgtaatgctatgatagcttggcgatggtctcgtgacgcaaga  931600
                                                      <---------YAB1
                                                    <---------ICU4
                                                    --------->YAB1
                                                   --------->ICU4
                                                 --------->YAB1
                                                --------->AHL20(2)
                                               --------->AHL20(2)
                                               <---------AHL20(2)
                      <---------MYB52(1)    --------->AHL20(1)
                      --------->DOF5.7(2)   --------->AHL20(2)
        --------->AHL20(2)                  <---------AHL20(1)
        <---------AHL20(2)       <-----------GT1<---------AHL20(2)     ----------->GT1
---->ARR11(3)        --------->At5g28300    <---------AHL20(2)        ----------->GT1
-----ARR11(3)        <-------GAMYB       --------->YAB1--------->YAB1--------->DAG2
=============================MYC_MYB    <---------AHL20(2)          ---------->DOF2
-----GLK1(2)        ----------->GT1    --------->AHL20(2)      >>>>>>>>>TBF1              --------->GLK1(1)
 
tttttggtcatataaattttggaccgttaattttaaaaaccatataataaattaataatcatagaagaagaaaaagttaaaatggacgatgggaattgca  931700
          <---------ALFIN1
       --------->PCF2
       --------->ANAC46
      --------->TCP16(1)
      --------->TCP11(2)
      --------->PCF5          --------->ANAC58
      <---------PCF2          --------->ANAC58
     <---------TCP16(2)       --------->ANAC46                     ----------->GT1
     <---------TCP15(2)   <----------DOF2                     ---------->DOF2
    --------->WRKY38(1)  ------>ZmHOX2a(2)                --------->YAB1           --------->AHL20(2)
   --------->ALFIN1    --------->ARR11(3)                <---------ATHB12         --------->AHL20(2)
 <---------ANAC46      <---------ARR11(3)              --------->WOX13(1)   ----------->GT1        <
 
actcgggtggaccccactcagacactgatctttaagcaatcgcttcgtttcgatttcgcaatcacaaaagtagcaaaaatcgaaaataaaaaaaacttag  931800
                                                  ------>ZmHOX2a(2)
                                                 <---------GLK1(1)
                --------->DEAR3(1)               --------->GLK1(1)
              ------>NtERF2                      <------ZmHOX2a(2)
             --------->ANAC46                   <---------ARR11(1)
             --------->ANAC58                   --------->ARR14(2)      --------->LBD16
             --------->ANAC58                   <---------ARR14(2)   <---------LBD16
            --------->MYB46(3)                  <---------AGP1    --------->HSFB2a(1)
          <---------ARR14(2)                    <---------ARR11(3)--------->HSFC1(2)
          --------->ARR14(2)                   <---------ARR14(1) <---------HSFB2a(1)
          ------->TEIL                         <---------CCA1(2) ------->TEIL
       --------->ANAC58                       --------->LBD16    --------->ARR14(2)
       --------->ANAC58                      --------->HSFB2a(2) --------->GLK1(2)
       <---------MYB52(2)                    <---------HSFB2a(2) <-----------ARR10
       --------->MYB46(3)          --------->ARR14(2)            <---------ARR11(1)
     --------->MYB52(1)            <---------ARR14(2)           <---------ARR14(1)
    --------->TOE1(2)              <---------GLK1(2)            <---------GLK1(2)
   --------->MYB46(3)              <---------ARR11(3)   --------->ZAT14--------->LBD16
   <---------MYB52(2)           <---------HSFB2a(2)     <---------At4g35610
  --------->SPL7<---------ZAT18 --------->HSFB2a(2)     --------->At4g35610
 --------->MYB52(1) <---------ATHB12        <---------LBD16     <---------CCA1(2)     <---------AHL20(2)
---------MYB52(2)<---------ALFIN1--------->LBD16<-----------ARR10<---------ARR14(2)   --------->AHL20(2)
 
tagcgaacgaacgaacccgcccactcatttagtttccagatttttcttccggatctctctgctctccgaatctcccgagttttttttttttaatttttgt  931900
                   <---------AtMYB61
                   <-----------RAV1(1)
                 --------->CCA1(2)
                --------->ARR14(2)
                <---------ARR14(2)
                --------->ARR11(3)
               <------ZmHOX2a(1)
         <---------ANAC46
        --------->ATERF1(1)
        <------NtERF2
       <---------DEAR4(2)
       <---------ATERF1(1)
       ------>NtERF2
       <---------ERF1
       <---------RAP2.3(1)
      --------->DEAR3(1)                                                                         <--
      <---------RAP2.3(2)                                                                       ----
      <---------ATERF1(2)                                                                       <---
      <---------DEAR3(1)                                                                       <----
      --------->ATERF1(2)                                                                      -----
     --------->ATERF1(1)                                                                       -----
     <---------ABI4(1)                                                          <---------ALFIN1----
    <---------ATERF1(1)              --------->ALFIN1  --------->ZAT14          --------->ZAT6 <----
   <---------DEAR3(1)           --------->ANAC46   --------->ANAC58            <---------ZAT14------
   <---------ATERF1(2)         <---------LBD16     --------->ANAC46            --------->ZAT14<-----
   --------->DEAR3(1)  <---------MYB46(3)          --------->ANAC58           <<<<<<<<<<<<<<<<<LFY
  *TSS<---------RAP2.3(3)     --------->MYB52(1) <---------ALFIN1   <---------HSFB2a(2)   ----------
  --------->DEAR3(2)  --------->ALFIN1        --------->ANAC46      --------->HSFB2a(2)<----------DOF2
 
ttctcaccggcggcgagaggatatggtggtgattcacggagtgtctcttactccacgcttcactcttccttctcgacctctcaacactggctttaatgcc  932000
                                                                                     ------>NtERF2
    <---------ALFIN1                                                                 >>>>>>>>>>>>>>>
--------->GLK1(1)                                                                   --------->ANAC46
----NtERF2                                                                          --------->ANAC58
-->NtERF2                                                                           <---------TGA2(1)
------RAP2.6(3)                                                                     <---------bZIP60(1)
-----ATERF1(2)                                                                      --------->ANAC58
---->ATERF1(2)                                     <----------DOF2                  --------->bZIP60(1)
---->RAP2.6(2)            --------->DAG2     --------->ANAC58                       --------->TGA2(1)
----->LBD16              ---------->DOF2     --------->ANAC58                    ----------->TGA1
-----RAP2.6(2)      --------------->AGL15    --------->ANAC46                    ----------->HVH21
--->RAP2.6(3)       <---------------AGL15   --------->SPL7                      <-----------HVH21  -
----LBD16         <<<<<<<<<TBF1           <---------SPL7 <----------DOF2   <---------ZAT14      <---
>DOF2        <----------DOF2    ----------------------->TaNAC69(2)         --------->ZAT14   <------
 
ggcaattccaccctctctttcttcttcaaaaagcaccctctctctcgtacgcctctttctctttctcttaatttgctgtgctctgtgacgccattgttgt  932100
                --------->ATHB12
                <---------ICU4
               --------->ICU4
         --------->ATHB51
         <--------ATHB1
         --------->ATHB12
         -------->HAHB4
         <---------ICU4
        <---------YAB1
        --------->ICU4
        <---------ATHB51                                               <----------DOF2
   ----------->GT1                                          --------->ZAT14
--------->MYB52(1)                                        --------->ZAT14
>>LFY --------->YAB1       <-------TEIL                   <---------ZAT14                          <
------>GAMYB   <---------YAB1                             --------->ZAT18                         --
--------GT1   <---------TOE2(3)                         --------------->AtSPL8              --------
---REM1(1) <---------WOX13(1)                    <-------TEIL     <----------DOF2          <--------
 
aactgactgtaataattgatgattagcgagttcattcgtctattggactagcttcatgaactgtactgtcttttctttcgctggggaatacctcttgatt  932200
                        <---------ANAC46
                       <---------ZAT2
                    <----------DOF2
                   ------>ZmHOX2a(2)
                  <------ZmHOX2a(2)
                 --------->ARR14(3)
                 --------->ARR11(3)
                 <-----------ARR10
                 --------->ARR14(2)
                 <---------AGP1                              --------->ANAC58
<-------TEIL     <---------ARR14(2)                          --------->ANAC46
------ZmHOX2a(2) <---------ARR11(3)     --------->LBD16<-----------HVH21               -------------
------->AGP1     <---------ARR14(3)   <---------LBD16  <-----------TGA1   <---------At4g35610
->ATHB12       ----------->ARR10  --------->GLK1(2)   --------->ANAC46 <---------At4g35610         -
-YAB1   <---------ZAT14--------->ZAT2 --------->At4g35610    --------->ANAC58   ---------->DOF2    -
 
agatccatgtctgtagggaagatctttgctgggaaacaatctgcggagtttgattcttcgtcacaagctatctctgcttctgagaaagtcttagtacctg  932300
             ------>ZmHOX2a(2)
       --------->YAB1                   <----------DOF2
      --------->ICU4                 <---------ARR11(3)
      <---------YAB1                 --------->ARR11(3)
 <---------ICU4                     <---------GLK1(1)
 --------->YAB1                     --------->GLK1(1)
-->AtSPL8<---------YAB1             <---------CCA1(2)               ----------->GT1   --------->ANAC58
-------->ARR11(3)           <-----------RAV1(2)          <----------DOF2              --------->ANAC58
-------->GLK1(2)--------->LBD16 --------->ALFIN1     <---------At4g35610   <-----------GT1         <
 
ataatcttgatgatgatcccagaggtttttcacaggtggatatcttttgtcatctctgctctttaatcagtgagttatatacaatgcataggcaaattgt  932400
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AGI:  At5g03650.1   
Description:  SBE2.2 (STARCH BRANCHING ENZYME 2.2); 1,4-alpha-glucan branching enzyme. similar to SBE2.1 (STARCH BRANCHING ENZYME 2.1), 1,4-alpha-glucan branching enzyme [Arabidopsis thaliana] (TAIR:AT2G36390.1); similar to starch branching enzyme II [Vigna radiata] (GB:AAT76444.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15952.1); similar to starch branching enzyme II [Populus trichocarpa] (GB:ABN05322.1); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193); contains InterPro domain Glycosyl hydrolase, family 13, all-beta; (InterPro:IPR013780); contains InterPro domain Immunoglobulin E-set (InterPro
Range:  from: 931903    to: 937640    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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