Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           <---------At4g35610                                                                                     ------>ZmHOX2a(2)                                                                                    --------->GLK1(1)                                                                                    <------ZmHOX2a(2)                                                                                    <---------GLK1(1)                                                                                   <---------ARR14(2)                                                                                   <---------AGP1                         --------->YAB1                                            <-----------ARR10                         <---------ICU4                                            --------->ARR14(2)                 --------->O2                                             --------->ANAC58    <---------O2 <---------O2                                           --------->MYB52(1) <---------DAG2    --------->O2 <---------ALFIN1                               ---------->DOF2    <---------ARR11(3) ------HSFB2a(2) --------->bZIP60(2)                   <---------AHL20(2) --------->ANAC58 <--------- -HVH21     <-----------GT1            <---------MYB46(3)    <-----------HVH21     --------->ARR11(3)   gcgaagacgtcgttttgccacatcgcatcatgagcttgttgttgttgaatcggctgttttattcgtcaaagaagaaacgaaaacagatctcagctttttt  565500                                                                                                   --                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                                <----                                                                                                -----                                                                                               ------                                                                                              <------                                                                                             --------                                                                              ----------->HVH21<-----                                                                              --------->WRKY12-------                      --------->GLK1(1)                                       --------->WRKY38(1)----                      <---------GLK1(1)                          --------->AHL20(2)          --------                ---------->DOF2                               --------->CCA1(2)             <--------            --------->TOE1(3)  <---------YAB1                <---------ARR11(3)             <--------            <---------------AGL15                            --------->ARR11(3)    ------------------            --------------->AGL15                          ----------->GT1  --------->At4g35610------            --------->TOE2(3) <---------GLK1(2)     --------->DAG2          <---------At4g35610<----- -DOF2     ----------------->AGL2                  ---------->DOF2<---------AHL20(2)       --------->ANAC46   tgatttcacaaaaaccctaaaaggaattctctgattcttgaaggaagagaaggtaaagggagagatataaaatcaatgggctgacccttgaatacggcgc  565600                                                                 --------->AtMYB61 ------->ARR14(2)                                                <---------ALFIN1 --------MYB52(1)                                               <---------ABI4(2) --------ARR14(2)                                              ------>NtERF2 -------SPL7                   --------->MYB52(1)             ------>NtERF2 --NtERF2                   <---------O2                    --------->LBD16 ---->ATERF1(1)          --------->TOE2(2)              --------->DEAR3(1) >NtERF2                 --------->TOE1(2)              <---------ALFIN1 ---DEAR3(1)             --------->DEAR3(1)             --------->AtMYB61 ->RAP2.3(1)            --------->MYB46(3)             <---------ABI4(2) ----ATERF1(1)          --------->DEAR3(2)           <---------ARR14(2) -->DEAR3(1)          --------->MYB52(1)             --------->ARR14(2) ----->DEAR3(1)    <---------At4g35610             <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ->ATERF1(1)       --------->At4g35610 --------->LBD16 <---------MYB55(2)        ------>NtERF2 -ATERF1(1)     <---------MYB52(1)  --------->MYB52(1) --------->MYB46(3)       <---------ALFIN1   -- -RAP2.3(1)--------->ANAC46 <---------TGA1a        --------->LBD16--------->MYB52(1)            ===== --->WRI1------>ZmHOX2a(1)  --------->O2         <-----------------------TaNAC69(2)             ----- --->ABI4(2)   =======================MYC_MYB    <---------LBD16--------->MYB46(3) --------->AtMYB61< ----RAP2.3(1) <-------GAMYB--------->TGA1a --------->YAB1 --------->DEAR3(1)<-----------GT1 ------>NtERF2   cgttctggctcctacgcggttagcaaaccgacgagacggaccggaattagaaccggaaccaccgcgaccaccggtgttattgccacctccaatgcctcct  565700                                                                                 <---------RVE1(1)                                                                                 <------ZmHOX2a(2)                                                                     <---------ARR11(3)                                                               <---------ZAT2   <---------ARR11(3)                                                               --------->At4g35610                                                               --------->ZAT2   --------->ARR14(2)                                                               <---------At4g35610                                                               <---------O2     <---------ARR14(2)        <------ZmHOX2a(2)                                      --------->O2     --------->ARR11(3)        --------->CCA1(2)                                      --------->TGA1a  <-----------ARR10       --------->ARR14(2)                                      <---------TGA1a  <---------AGP1       --------->AGP1                                          ===============================bZIP_DOF       --------->ARR11(3)                                      ----------->RAV1(2)       <---------ARR11(3)                                      --------->bZIP60(2)       <---------ARR14(2)                                     ------>NtERF2     <---------ARR11(1)      --------->GLK1(1)                              <-----------ARR10         <---------CCA1(2)  <------NtERF2<------MYB46(1)                 ----------->HVH21   <<<<<<<GRF7 <---------ARR14(1)  ------>NtERF2<------MYB83                  --------->ANAC55(2) ----------->HVH21------>ZmHOX2a(2)  --------->LBD16                       --------->YAB1    --------->ANAC46    --------->LBD16 ---->NtERF2<---------MYB52(1)       <---------bZIP60(1)  --------->ANAC58   <---------TOE1(2)   ---- ==============HOX2a_HOX2a           --------->bZIP60(1)  --------->ANAC58  <---------LBD16      <--- ->ZmHOX2a(1)<--------P           <---------YAB1    <---------CCA1(2)--------->ARR11(3)      -------- ---------DEAR3(1)        ----------->ARR10  <---------ANAC55(2)<---------MYB111(1)<----------DOF2   cggccgcgagatccagtaggttttcgattagatttgatgatatcatcaagtgacatatctaagccacctgacatcttcgccggatcttttctccgatatc  565800                                                     --------->LBD16                                                    --------->DEAR3(1)                   <---------LBD16                                                  ------->TEIL                           <---------HSFB2a(2)                                                 <---------ALFIN1                        --------->HSFB2a(2)                                                 --------->ANAC46                  --------->ARR11(3)       <---------STY1(2)                       --------->ANAC55(2)                 <---------ARR11(3)      ------->TEIL                             --------->ANAC58                    <-----------GT1   <---------REM1(1)                           --------->ANAC58                <---------CCA1(1) ----->HSFB2a(2)              --------->GLK1(1)<---------ANAC55(2)             <---------RVE1(1) ------HSFB2a(2)   ---------->ID1              --------->ANAC46               --------->ARR11(3) ->GLK1(1)       <-----------RAV1(1)         <-----------GT1 *TSS             <---------ARR11(3)    <   gagaaatgtagctagggttttgttgctctgagatttcaaagatggaattacgcaccgcgagagtgagagagagagaaacagatattatcttctcggagaa  565900                      <---------ICU4                      --------->YAB1                     <---------ATHB12                <----------DOF2              <---------At4g35610                        <-----------GT1          --------->AtMYB61                         --------->ANAC55(2)         --------->ANAC46 <------------CBF          <---------ANAC58                    <----------DOF2       <---------ALFIN1 <---------YAB1             <---------TOE2(2)           <---------YAB1     ---   XXXXXXXXXXXXXXXXXXXX>MIR852                     <---------TOE1(2)    --------->LBD16 <---------DAG2 ---------YAB1--------->At4g35610<-----------RAV1(1)<---------ANAC58  ----------->RAV1(2)<----------DOF2   ttacgataaacacctcagctttaatcaatattgttttgttgcccttaaactcttacgttttactaaatagacccctgagttcttaatgggccttttggac  566000                                                            >>>>>>>>>>>>>>>>>LFY                                                           ------>NtERF2                                                           --------->LBD16                                                   <-----------GT1                                                <---------AHL20(2)                     <---------YAB1        --------->AHL20(1)                     ------>ZmHOX2a(1)    --------->YAB1 --------->SPL7<---------ICU4   --------->ANAC58                    --------->TOE2(3)     --------->AHL20(2)------>NtERF2      --------->ARR11(3)           --------->ALFIN1              <---------YAB1  <---------LBD16   ---------->DOF2 <-------TEIL      <<<<<<<<<<<<<<<<<LFY   <---------ALFIN1 <---------AHL20(2)      --------->ICU4    --------->ANAC58      >>>>>>>>>>>>>>>>>LFY  <---------ZAT18<---------AHL20(1)       --------->YAB1 <---------ETT(2) ------>YAB1  --------->PCF5--------->ZAT18<---------AHL20(2)      <---------YAB1  --------->ZAT18   tcataaaaatccagtggcccatcctcattgtccacttcaacttattatatttttttccctccggccattgtcataatcaaagatgtggacaagtacatgt  566100             <---------------AGL15             --------------->AGL15            <-----------------AG            <-----------------AGL2                                  <---------TOE2(3)            ----------------->AGL1                                  <---------YAB1            <---------ANAC58                                       --------->YAB1            =========================================================================================            <---------ANAC58                                       <---------AHL20(2)            <-----------------AGL1                           --------->ANAC55(1)               <-----            <---------ANAC46                                 --------->ANAC58               <--------     --------->ANAC58                                        --------->ANAC55(2)      <---------DAG2     --------->ANAC55(1)                            <-------TEIL   --------->AHL20(2) <----------DOF2     --------->ANAC58                           <-------TEIL --------->ANAC46   <---------WRKY38(1)     --------->ANAC55(2)       ----------->HVH21------->TEIL --------->ANAC58  --------->WRKY18(1)     --------->ANAC46--------->ZAT18    --------->YAB1       <---------ANAC55(2)<---------WRKY12   gaagcacacgcattgcctgtatgggcacagtatgtgactgtatcacaacgtacatacacattcacgtattaatattagtaagtcaacccttttttttctt  566200                     --------->ARR11(3)     <---------------AGL15     --------------->AGL15    <-----------------AGL1    <-----------------AG                                    <---------ZAT6    --------->TOE2(3)<-----------ARR10         <---------ANAC58                   ----------->HVH21    <-----------------AGL2  <---------ANAC58   <---------ANAC46               <-----------GT1    <-----------------AGL3  <---------ANAC58   <---------ANAC55(1)       <----------DOF2       <----- =====================MADS_MADS       <-----------GT1   <---------YAB1--------->ARR11(3)    <-------- -----DOF2           --------->ARR14(2)        <---------ANAC58       <---------ARR11(3)    --------- ---GT1              <---------ARR14(2)      <---------AHL20(2) ---------->DOF2 ----------->RAV1(2)   tgtttatctcaatttggaaaacaaatcttgccttgctatttaacaaattacttgtaccatgagtgttaaagacatctttataacctgaccagaagatttt  566300                                                                                           --------->YAB1                                                                                           <---------ICU4                                                    --------->AHL20(2)            <---------bZIP60(1)                                                   <---------YAB1                 --------->bZIP60(1)                        --------->ICU4          <---------YAB1                  <---------ICU4                   <---------YAB1           <----------DOF2                     --------->YAB1        --------->HSFB2a(2) <---------AHL20(2)  <---------AHL20(2)<---------GLK1(2)       --------->AHL20(2)        <---------HSFB2a(2)<---------YAB1   <---------DAG2        <---------ARR14(2)      <---------AHL20(2) ----AHL20(2)    <---------ICU4         --------->ZAT18           --------->ARR14(2)    --------->TOE2(3) -ARR11(3)       --------->YAB1         <---------ZAT18    --------->CCA1(2)   --------->ICU4 <------ >ARR11(3)      --------->ICU4       <---------ANAC46<---------AHL20(2)        <---------ATHB12 <----   atgtagaattctagacgaattatgaaatttttaatggttaagtggacttttttattatatgatatacagatttgtattcaaatgatgacacattaattac  566400  Previous    Next  AGI:  At5g02530.1    Description:  RNA and export factor-binding protein, putative. similar to RNA and export factor-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G59950.4); similar to RNA and export factor-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G59950.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83715.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21699.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 564083    to: 565861    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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