Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   --------->ALFIN1                                               --------->TGA1a                  <---------WOX13(1)                                               <---------O2                   <---------MYB46(3)                                               <---------TGA1a                --------->ATHB12                                               --------->O2                <---------ANAC58           --------->AtMYB61         <---------GLK1(2)                     <---------ANAC46          --------->ANAC58         <---------AHL20(2)                     <---------MYB46(3)          --------->ANAC58         --------->ARR11(3)                     --------->MYB55(2)       --------->ZAT18             <---------ARR11(3)                 --------->ATHB12     ----------      --------->ANAC58             <---------AHL20(1)                <---------YAB1        ------>ZmHOX2a(1)      --------->ANAC58             --------->AHL20(2)               <-----------HVH21     <---------- ------->DOF2            --------->ANAC58  <-----------HVH21   --------->AHL20(2)         <---------- >TOE2(3)----------->RAV1(1)       --------->AHL20(1)          <---------AHL20(2)         <---------- >TOE1(3)------->TEIL    --------->ANAC58  <-----------TGA1<---------ANAC46<---------ANAC58<---------   aaaagagaacgcaccaaaactgatgacaagctctgaatatattctcgtcatgtgtgtcattgtgtttaaatgtcattgggtgattgaaaactcctcattt  454400        <<<<<<<<<<<<<<<<<LFY   --------->TOE1(3)   <---------DAG2                                                                       <------MYB83< ------>NtERF2                                                                          <------MYB46(1) ----->AGL15                                                                           <---------MYB46(3) -------AGL2                 <---------LBD16                        <---------YAB1    <---------MYB52(1) -------AGL3            --------->AHL20(2)                  ----------->GT1          <---------At4g35610 -------AGL1            <---------AHL20(2)               <-----------GT1      --------->ICU4 -------- ------AGL15           --------->AHL20(2)     <----------DOF2    <---------YAB1      <-------GAMYB  <   tggcaccttaagacactggaatctatttattttcggaaaaaaactcttctttctctatataactgttaatattcttggtactgattcagttggtactgat  454500          <---------ANAC58          <---------ANAC58     <---------REM1(1)     <-----------RAV1(1)   <------MYB83   <---------AHL20(2)   <------MYB46(1)--------->AHL20(2)                                                        <--------  <---------AtMYB61                                                                    <---------ARR11(3)  <---------MYB46(3)     ---------->DOF2                                               --------->ARR11(3) <---------MYB52(1)   --------->YAB1           <---------ANAC58                       <---------CCA1(2) -------GAMYB     <---------YAB1               <---------ANAC58                      ------->TEIL  <- ->ICU4   <---------ANAC46                     <---------ANAC46                   --------->ANAC55(2) ---------At4g35610  <---------YAB1       <---------ICU4 <---------ZAT6           <---------ANAC55(2)   tcagttggtgttgcttctatattattataaagaaggaatgcaaaacatgacttgaaatagtgtttgtctctagtatccatgtatacgtatatctctttca  454600                                                           <--------ZAP1             <---------HSFB2a(1)                        --------->LBD16          <------ZmHOX2a(1)                            <---------LBD16   ------>ZmHOX2a(2)                           <---------AHL20(2)   ==============HOX2a_HOX2a      --------->ANAC58--------->ARR11(3)                             <--- <---------ARR11(3)   <------MYB83--------->ANAC58<---------ARR11(3)                          <------ --------->ARR11(3)   ----------->GT1          --------->AHL20(2)                             <------ --DOF2 <---------TOE1(2)     ------->TEIL--------->AHL20(2)        ---------->DOF2          <------- --------ATHB12       <------MYB46(1) <----------DOF2 <---------LBD16              --------->TOE2(3)   aatgatctcttaggaacatttgggaggtaatgtatcaagccttttaaaataaaatctccggggtcaatttgaaaggagcccataacattaagtagggcgt  454700       --------->ATHB12      --------->AHL20(2)      <---------AHL20(2)                                              ------>NtERF2    --------->TOE2(3)                                                <----------ID1 ----TEIL           ----------->GT1                               --------->DAG2                 <--- ---ANAC58  <---------ANAC58   --------->DAG2                    --------->MYB52(1)           <------ ---ANAC58  <---------ANAC58  ---------->DOF2                 --------->YAB1     *TSS  ---------->ID1 --ZAT18<------------CBF   --------->YAB1               ----------->GT1          <---------GLK1(2)  -   tcatttcattaattgggtttgaatgttaaacataaagcatggggaacatttagtgatttagtaaaaataaggggccaaagatagaatttctcgtttttat  454800                                                                            <---------ANAC58                                                                            <---------ANAC46                                                                          <---------MYB46(3)                                                                          ------>NtERF2                                                                          --------->ABI4(2)                                                                        <---------MYB52(1)                                                                       <---------ANAC58                                                                       <------MYB83 =================                                                                       <---------ANAC58                                                                       <------MYB46(1)                                                                      <---------DEAR3(1)                                                                      --------->MYB52(2)                                                                      <---------MYB46(3)                                                                     --------->SPL7 <---------At4g35610                                                                    <---------MYB52(1)      --------->ATHB12                                             <---------SPL7   ----------->RAV1(2)    <----------DOF2                                      --------->ARR14(2) <---------ANAC58        < --------->ANAC46                                        <---------ARR14(2)<------NtERF2            - --------GT1                                            --------->ZAT2--------->MYB55(2)            < -----GT1     <----------DOF2                           <---------ZAT2--------->MYB46(2)   --------->TOE1(2) -------->MYB46(3)                            --------->ATHB12 --------->GLK1(1)    --------->At4g35610   cacccgcttcatttgcctttctatcgccacaagaacacagagagagaacgattagcccagttccgatatcgttcggtggcttcttcatctgaagctacga  454900                                                       <---------DEAR3(1)                                                      --------->ATERF1(1)                                                     ------>NtERF2                                                     <---------ATERF1(1)                                                     <---------RAP2.3(1)                                                     --------->LBD16                                                     <---------DEAR4(2)                                                    --------->DEAR3(1)                                                    --------->ATERF1(2)                                                    <---------DEAR3(1)                                                    <---------ATERF1(2)                                                   --------->ORA47(2)                                                   --------->RAP2.3(1)                                                   --------->ERF1                                                   --------->ATERF1(1)                                                   <---------LBD16              --------->ANAC58             <---------ALFIN1              --------->ANAC58           --------->ABI4(1)             --------->WOX13(1)          ------>NtERF2<------NtERF2     <-----------HVH21                  --------->DEAR3(1)                            --------->ARR14(2)    <---------DEAR3(2)                  --------->ANAC46                          <------NtERF2   <---------DREB2C(2)                  --------->DREB2C(2)     --------->TGA1a  ------>NtERF2   <---------At1g77200                  --------->ANAC58<---------DEAR3(2)      <---------ALFIN1   <---------DEAR3(1)          --------->ATHB12   --------->LBD16 <---------CCA1(2)   <---------ARR14(2)   <---------DEAR4(1)         <---------ATHB12    <---------ATERF1(1)           --------->DEAR3(1)  --------->DDF1      <--------P        --------->ANAC58<---------MYB46(3)     --------->MYB46(3) ===========RAV<---------ATHB12<---------ICU4     ------>NtERF2 --------->O2  --------->LBD16 ---------bZIP60(1) --------->ATHB12   --------->DEAR3(2)    ------>ZmHOX2a(1)------>NtERF2 --------- -------->bZIP60(1) <---------MYB46(3) --------->MYB46(3) --------->PCF5     --------->ANAC46------>NtERF2 -----------RAV1(1)<---------ATHB12  <---------ALFIN1<---------ERF1         <---------LBD16<---------At4g35610   tgatgtcggtgagagcaatcaatggttgctccatcattcgcaccgccacttccgccggcggtcctcccgtctctctattccgccaccgtattcagcgcct  455000                               <---------YAB1                               <---------ANAC55(1)                 --------->ARR14(2)                      <---------HSFB2a(2)                          <---------ARR14(2)                      <---------HSFC1(1)                          <-------GAMYB                      --------->HSFB2a(2)                        <---------DEAR3(2)                  --------->ARR14(2)                             <---------MYB46(3)                  <---------ARR14(2)     <-----------GT1        <---------DEAR3(1)               <---------MYB52(1)  --------->AHL20(2)      <---------ARR14(2)              --------->LBD16  <---------ANAC58        <---------LBD16             <---------ANAC46  <---------ANAC55(2)     --------->LBD16 --------->HSFB2a(2)         <---------At4g35610   <---------ANAC58      --------->LBD16   <---------HSFB2a(2)  ---------         --------->At4g35610   <---------ANAC46      <---------LBD16   <---------LBD16      <-------- >DEAR3(1)  <---------LBD16  <-----------GT1--------->ZAT6 --------->ARR14(2)               <--------   cagagcttctcatctccgtgaattctcgaaattacgtttaaattttccactaatccgcgcggataggcggtttctcggaaatagtgatgctccgagctgt  455100                                                            --------->MYB52(1)                                                         --------->ANAC58                    <-------                                                         --------->ANAC46                   ---------                                            --------->ARR14(2)                       <------NtERF2---                                            <---------ARR14(2)                      ------>NtERF2<---                                   ---------->DOF2  --------->At4g35610             >>>>>>>>>>>>>>>>>LFY                                 --------->LBD16    --------->ZAT2                 --------->ANAC46 >ZAT2                         <---------HSFB2a(2)  <---------At4g35610            --------->ANAC58 -ZAT2  <-------TEIL         <---------ARR14(2)--------->WOX13(1)  --------->At4g35610   <---------ZAT6 -At4g35610         --------->ETT(2) --------->ARR11(3)  --------->ANAC58          --------->ANAC58   tcgacttgcatacatagtctggtcgaaagtgtttccgaagagctcgaatccatcagcagacgcaagggaagccgaatgagagttcgcgccagtgtaaagt  455200                                                          <---------ANAC46                                                          <---------ANAC55(2)                                                          <------MYB83                                                          <------MYB46(1)                                                          ----------->GT1                        --------->ATHB12                 --------->MYB46(2)                        <---------ICU4                 --------->ICU4                               <       <---------ARR14(2)                         ----------->GT1                                <---       --------->ARR14(2)                    -------->ATHB1                         --------->ANAC58>    <---------TOE1(2)  <---------YAB1        <---------ICU4                         --------->ANAC58- --------AtSPL8        --------->ICU4        --------->ATHB12                       --------->ANAC46< ->DOF2<---------ARR11(3)                    --------->YAB1            ----------->GT1   <---------ANAC46 ------>ANAC46      --------->ICU4          <---------ATHB12           <---------ANAC46 <---------LBD16 ----TEIL  ------>ZmHOX2a(1)          <---------ANAC55(2)--------->MYB59        <-----------GT1  ----   acgtcgcagtatccttctcttactgattattagcaaaattaagtgaatcattgtgtaattaggtgaatttgtagggtgaaattaacaagctacggagagg  455300  Previous    Next  AGI:  At5g02250.1    Description:  EMB2730/RNR1 (EMBRYO DEFECTIVE 2730); RNA binding / ribonuclease. similar to EMB2763 (EMBRYO DEFECTIVE 2763), RNA binding / ribonuclease [Arabidopsis thaliana] (TAIR:AT2G17510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15654.1); similar to hypothetical protein OsI_004299 [Oryza sativa (indica cultivar-group)] (GB:EAY76452.1); contains InterPro domain Ribonuclease II and R; (InterPro:IPR001900) Range:  from: 454781    to: 459525    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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