Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->GLK1(2)                      --------->ANAC46    --------->YAB1                      <---------ALFIN1  ------->TEIL           <---------ANAC55(2)              <----              --------->GLK1(2)   --------->ARR14(2)      ---------->DOF2    <---------LBD16  ------>MYB83       <---------At4g35610        <---------ARR14(2)  <----------ID1 <---------ANAC58         ------>MYB46(1)       --------->At4g35610------>ZmHOX2a(1)       <----------DOF2    <---------ANAC58       <--------      ------->TEIL  <---------ALFIN1 <---------YAB1 ---------->DOF2<---------YAB1           ---------   actctgtgcatctgataatcttccactcctcacgagaatatgaatcatagcgcttaaagacaaagacgtatgcttgaaattcggaaaatggaaacctaat  44000                                        ----------->GT1                                      <---------At4g35610             <---------WRKY18(1)      --------->At4g35610            --------->WRKY12          <------NtERF2       <---------ARR14(2)           <---------DEAR3(1)       <---------ARR11(1)          <------NtERF2       --------->ARR14(2)          --------->ATERF1(1)       ------->TEIL               <---------RAP2.3(1)      <---------CCA1(2)          <---------RAP2.3(2)           ---------->DOF2    --------->ANAC46        -------->ATHB1                 ------>NtERF2    --------->ANAC58        --------->ATHB12              <---------DEAR3(1)         <---------MYB46(3)    --------->ANAC58        <---------ICU4               --------->RAP2.6(3)    <-----------RAV1(2)   --------->LBD16  ----------->GT1<---------At4g35610  ------->GAMYB         --------->GLK1(2) ------>ZmHOX2a(2)---------->DOF2<---------RAP2.6(2)   ----------->HVH21   ------->GAMYB           <- -----WOX13(1)  <---------MYB59 --------->RAP2.6(3)    --------->MYB46(3) ----------------->AG   ---- -MYB59--------->GLK1(2)   <---------ATHB12       --------->TOE2(3)     <-----------GT1         <---- >TOE2(3)   --------->WRKY38(1) <---------LBD16   --------->TOE1(3)----------->GT1 <---------MYB52(1)   tgatccacgaatctttgacctaaagttaaatcattgcggcagcggtataaaacctcaacgacggctaaagggtttaaccgaatcaggtggtttctcacat  44100                                         ---------->DOF2                                       --------->ANAC58                             >>>>>>>>>TBF1                                       --------->ANAC58                          >>>>>>>>>TBF1          <---------ANAC58--------->ARR14(2)                                  >>>>>>>>>TBF1       <--   <-----------GT1        <-----------ARR10   <---------ARR14(2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------YAB1             <---------ARR11(3)  --------->GLK1(2)            >>>>>>>>>TBF1  >>>>>>>>>TBF1 ----->ATHB51             <---------ARR14(2)  --------->ARR14(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -----YAB1<---------ANAC58--------->ARR11(3) <---------GLK1(2)          >>>>>>>>>TBF1  >>>>>>>>>TBF1   tattgttaccttgcttcaaactaaaacaaatcttctccaccaagaaagaatctgaaacagaaaacgaagccgaagaagaagaagaagaagaagaagaaga  44200                                                                             <---------ARR11(3)                                                                            ----------->GT1                                                                            <------MYB46(1)             --------->At4g35610                                            <------MYB83             <---------At4g35610                                          <--------P            <----        <---------ANAC55(2)                                            --------->LBD16          <----        --------->ANAC55(2)                                           <---------LBD16           -----       <---------LBD16                                               <---------LBD16         --------     <---------ARR14(2)                     --------->AHL20(2) <----------DOF2         --------->At5g28300     --------->ARR14(2)                  ----------->GT1    --------->ARR11(3)        ----------->GT1 -------HSFB2a(1)                       ----------->GT1     <---------ARR11(3)  <---------YAB1 <-----   gggttcgaatacgggagatgaagaagttgtcaagtttttgagaggtttaaatcgagtgagagggtcttttacgcgggaaggtattatacggtgaacaatc  44300       <-------GAMYB      <---------MYB46(3)     <---------TOE2(3)                                                      <------MYB46(1)   <-----------RAV1(1)                                                      <------MYB83 ----HAHB4                                                                 --------->MYB59 -----ICU4                                                                *TSS ---->YAB1                                                         --------->ZAT6 ->WOX13(1)                                                       <---------At5g28300------>ZmHOX2a(1) ----ATHB12                    <---------YAB1--------->DAG2   <----------DOF2  <-------TEIL     <----   attttttgtggttgagagagactcaatttgatttcgattgagaacaaaaattgaaacttgaaaacttttacagtagtttggttcatcctccatgagtcgg  44400                                                                   <------------CBF       --------->RAP2.6(3)                                                                 <---------AHL20(2)      <---------ICU4                                                                 <---------YAB1          --------->ATHB12                                                            --------->LBD16             <---------YAB1                                                          ------>ZmHOX2a(2)             --------->ICU4                 --------->At4g35610                      <---------LBD16      <-----------ARR10                 <---------ZAT2                        --------->YAB1   --------->At4g35610                 <---------At4g35610    <------------CBF --------->ARR14(1)    --------->GLK1(2)                 --------->ZAT2   ------>NtERF2   ------------>CBF--------->ATHB12    --------->YAB1 --NtERF2 --------->At4g35610    --------->DEAR3(1)   <---------ATHB12  <---------At4g35610         -   agttgagagaagagctcagagctcagagctaaacgacgacgttattgtgagtctcaatgatccggttttaattgggctgagaatcgaaccatgatggccc  44500                             <---------ICU4                                                    ------                             --------->AHL20(2)                                                <-----                             --------->YAB1                                                   <------                          --------->YAB1                                                      -------                    --------->TOE1(3)                <-----------GT1                  <---------ICU4               ---------->DOF2            <---------ZAT14                          <---------AHL20(2)  <---------ANAC55(2)     <---------ICU4  --------->ZAT14                         <---------AHL20(2)  --------->ANAC55(2)  --------->YAB1    <---------REM1(1)                        --------->AHL20(2) -------->AHL20(2)  --------->TOE2(3)    <---------ZAT6                   <-----------GT1   ---------   aattacatgttttcagaaaaagccttaataataatatcgaatagtgtagggatgtttactgttttgcaaaacatttatacaaaattaaatattgcaatca  44600                                                                        <---------ARR14(2)                                                                        ------->TEIL      --------->AHL20(2)                  --------->ARR11(3)            --------->ARR14(2)   ------>ZmHOX2a(1)           --------->HSFC1(2)                       --------->GLK1(2) --->YAB1                      <---------HSFB2a(1)                      <---------ARR11(1) ----ICU4                      <---------HSFC1(2)                      <---------ARR14(1) ---ATHB12                 ----------->GT1<---------ARR11(3)      --------->MYB52(1)  <---------ZAT6 -->ICU4                <---------AtLEC2  --------->GLK1(2) <---------YAB1      <---------TOE2(3) <-- >WOX13(1)     <---------YAB1  --------->HSFB2a(1)          ----------->GT1    ---------->DOF2    ---   taatcctataaaatactatgtttgatgcatggaaaattctacaaaatctacaaatgtaagttatgaaaaaaccgaatctactaaagtagtgttaatggtt  44700                                         <---------AHL20(2)                                         --------->AHL20(2)                                        --------->AHL20(2)                                <---------ICU4        ----------->GT1         --------->YAB1       <---------TOE2(3)        -------->HAHB4       <---------TOE1(3)    --------->AHL20(2)      ---------->DOF2       <---------AHL20(2)           >>>>>>>>>TBF1                  --------->TOE2(3) ----------->GT1           --------->AHL20(2)--------->AHL20(2)                      <---------CCA1(2) ---------GT1  <---------ATHB12 --------->ATHB51  ---------->DOF2                 --------->LBD16 ------>MYB52(1)<---------ICU4 --------->ICU4<---------AHL20(2)                 <---------LBD16     -   taacggtttaaagttaaatcatttctatatttaattatcgcatttaattaaaaaaagaagaagaaaacgttgtatatagtttcccgcttatctcaactgt  44800                                                                                           ----------             <---------ZAT14                                                              -----------             <-------TEIL                                                                 -----------            --------->DOF5.7(2)                                                           <----------            *TSS                                      <---------MYB59       --------->MYB46(3)<------      ------>ZmHOX2a(1)                       <-------TEIL   <---------At5g28300          --------->DAG2 ----->ZmHOX2a(1)                            --------->GLK1(2)  <-----------HVH21       ---------->DOF2   tcctcttcctcgacgttcactgtttacaaaccctaagtcgtatcgagattcaattgcctaattcactgtcaagtttcaacgactaagaagaaaaggtaca  44900  Previous    Next  AGI:  At5g01110.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05670.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63985.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 41767    to: 44374    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g01120.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43240.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43240.3); similar to hypothetical protein OsI_016617 [Oryza sativa (indica cultivar-group)] (GB:EAY95384.1); contains InterPro domain Protein of unknown function DUF674 (InterPro:IPR007750) Range:  from: 44812    to: 47126    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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