Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             ------>ZmHOX2a(1)                                          --------->TOE2(3)                                    <-----                                         ------>ZmHOX2a(2)                                    <------                                       --------->ARR14(3)                                 <---------ANAC58                                       <---------ARR14(3)                            <---------DAG2                  <---------ATHB12     <---------GLK1(2)                 --------->AHL20(2)   <------                --------->WOX13(1)     <---------ARR11(3)                --------->AHL20(1)  --------             --------->TOE2(3)         --------->ARR14(2)                <---------AHL20(2) <--------            --------->REM1(1)          <---------ARR14(2)               --------->AHL20(2)<---------ANAC58      <----------DOF2                ----------->ARR10           --------->ANAC58    <----------DOF2   --------->ARR11(3)    <----------DOF2<------ZmHOX2a(2)        --------->ANAC46   <---------DAG2   <---------ARR11(3)<---------GLK1(2) --------->ARR11(3)        --------->ANAC58<---------GLK1(1)   aatgagttctttctacatcaatcgattctttaaaaccctaagatcctcaattgcaaaacttgaatacaagaaaaaaaaattggatacctttttcttgatt  17666000         --------->ANAC58    ------>ZmHOX2a(1)   --------->TOE2(3)                          <---------YAB1 ----WOX13(1)                               --------->YAB1            <---------ARR11(3)         ---- ---ANAC58                                 <---------ATHB12           --------->GLK1(2)         <---- ---ANAC58                       <---------GLK1(2)    --------->ANAC46--------->ARR11(3)        ----- ->ATHB12--------->ANAC58    ---------->DOF2<---------ICU4     ----------->RAV1(1)            <------ -YAB1 --------->At4g35610<----------DOF2  --------->ICU4--------->AtMYB61          <---------AHL20(2)   gtcttcctcagaagcaaacttgagttttctttaaagcttctcttaatcatgagacaacaccactaccacaaaaatctaatagctatataatcgtataaaa  17666100                                                               <---------MYB46(3)                   -                                                            <---------MYB46(3)                      <      <----------DOF2                                       <-----------RAV1(1)                  ---- ----->RVE1(1)                       ----------->GT1      <---------At4g35610               --------- -----ARR11(3)             ----------->RAV1(1)            --------->At4g35610       --------->TOE2(3) ---->ARR11(3)             <---------ALFIN1       --------->DAG2                    --------->TOE1(3) ---AHL20(2)            --------->PCF2           ---------->DOF2             <----------DOF2---------   tctctcttctttctctctctctatgagccccacagaaaccagaaaatataaaaaagtatgagctgttgttgttcttcgactttaaacctcaagaacgcaa  17666200                                                                             <---------YAB1                                                                           --------->YAB1                                                                          <---------YAB1                                                                       <-------TEIL               <-- --------->ANAC46                                                     <--------P             <------- -------->ZAT18        --------->MYB52(1)                         <-----------RAV1(2)        <------- ---------------------WRI1                                       <------ZmHOX2a(2)  --------->GLK1(2) ------>DOF2 --------->ANAC58          =================================HOX2a_HOX2a<---------GLK1(2) >ANAC58     --------->ANAC58          ------>ZmHOX2a(1)        <---------ARR14(2) --------->ARR11(3) >ANAC58--------->ANAC46         <----------DOF2                --------->ARR14(2) <---------ARR11(3)   aatgcgctacaaaccaagaaaaacaaaacagaagtcttttcctctcttcgagttaagcacaaaccagatcaggttgatgataaaagattcttctactttt  17666300                                         --------->YAB1                                 <---------ANAC58                                           ---------                                 <---------ANAC58       <---------DAG2              <---------TOE2(3)                          <---------ZAT18--------->AHL20(2)                        ---------->DOF2 <----------DOF2         ----------->HVH21     --------------->AtSPL3             <---------AHL20(2) ---------GT1    <---------ATHB12<---------ANAC46       <----------DOF2  ----------->GT1---------->DOF2 ---DOF2         <<<<<<<<<ARR2<----------DOF2  --------------->AtSPL8  ------------------------>ANAC81 --DAG2     --------->ANAC46 <---------DAG2  --------->GLK1(2)  <----------DOF2   --------->AHL20(2)   tttctttctcttaaacacaatcaaacagtgacctttcgtttaataaaaatcggtacaacttttcttctttgaaaattgagaaaattaaagaaaagaaagg  17666400                                                                                           <---------GLK1(1)                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                                                                        --------->ANAC46                                                           <---------DAG2             --------->ANAC58                                                        <---------ARR11(3)            --------->ANAC46           --------->ANAC58                   >>>>>>>>>TBF1<----------DOF2            --------->ANAC58     <------ZmHOX2a(1)             ------------------------>ANAC81                   ------->TEIL <------ZmHOX2a(1)    *TSS      ---------->DOF2  ---------->DOF2                 ------->TEIL      -- ->DOF2    --------->ANAC58 ---------->DOF2>>>>>>>>>TBF1--------->ARR11(3)    <---------YAB1   ------   agaggaaggagccaagaaaactgaatgaatgaaagaaagagagaagaagaagaaagaagagcttttttgtttttgttttgatgaatgcacgcgaaatctg  17666500                   ------>NtERF2                  --------->RAP2.3(3)                --------->ZAT18                <---------ZAT18             <---------ANAC58                                                   <---------ARR11(3)         <---------ANAC58                                                   --------->YAB1         <---------ANAC58                                                  <---------YAB1         <---------ANAC46                     <----------DOF2      <----------DOF2          <-------- -------->DOF2<---------ZAT18           -------->P   <------ZmHOX2a(1)  <----------DOF2  <----------DOF2 ----->HVH21 <---------ANAC58          <-----------GT1         <-----------GT1 <---------ICU4<-------   acaaagcacttacttgtgtgcccccttctcttcagacaaacttaccttcttttcaggacatgttttctcctttccttttcattatctctctcttttatct  17666600                                        --------->AHL20(2)                                        <---------AHL20(1)                                        --------->AHL20(1)                                     <---------AHL20(2)                                --------->AHL20(2)                    --------->AHL20(2)                                <---------AHL20(2)   --------->YAB1   <---------AHL20(1)    <--------                        <-----------GT1 <---------AHL20(2)            --------->AHL20(1)    ---------                     --------->YAB1  --------->AHL20(2)             <---------ARR11(3)      =========       <----------DOF2  <---------ICU4  --------->ARR11(3)    <-----------GT1        <-----------GT1 <---------ALFIN1    --------->WOX13(1) <---------ARR11(3)--------->AHL20(2)    <---------ANAC46 -CCA1(2)          <---------YAB1  <---------YAB1   <---------ATHB12--------->AHL20(1)     <--------- ----GT1        <---------YAB1<----------DOF2     --------->WOX13(1)<---------AHL20(1)  ------->GAMYB   ctcccacttctttttcttcttattaatcacttcttttattaatatatttcatcaatcacattatttacaaaatattttagttttgtataactgtctattt  17666700                   <---------------AGL15                   ------>ZmHOX2a(1)                   --------------->AGL15       --------->TOE2(3)                          --------->ATHB12    --------->ARR14(2)       --------->GLK1(2)   <------ZmHOX2a(2)    <---------ARR14(2)<----------DOF2            <---------YAB1 -------AGL15      =====================================HOX2a_HOX2a ------>AGL15    <-----------------AG           <---------ARR11(3) ==================================MADS_MADS    --------->ARR11(3) --------AGL2    <-----------------AGL1        <------ZmHOX2a(1)          ------->TEIL   ttagtgaatccctaatctctcctactttgggaatcttatggatactataggatcattgtaacatagtttatacatgtatatatgtgtcaaattgtgagtc  17666800                      <---------ANAC55(1)                     <-------TEIL                --------->AHL20(2)                <---------AHL20(2)            --------->AHL20(2)        ----------->GT1                                                      --------->ARR11(3)    --------->ARR11(3)<---------ANAC58          --------->AHL20(1)           <---------ARR11(3)    --------->AHL20(1)<---------ANAC58          --------->ARR11(3)     ---------->DOF2           ----    <---------ARR11(3)<---------ANAC55(2)      --------->YAB1     --------->DAG2               <-----    <---------AHL20(1)--------->ANAC55(2)    ----------->GT1     ---------->DOF2   <-----------------AGL1   aaacaatatatagtttatatatatacgtgtgaaattgtgagtcaaacaagtatattgatataagaaataaagtcaaagagttcttaacctatttggacct  17666900  Previous    Next  AGI:  At4g37590.1    Description:  phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT2G23050.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71996.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210) Range:  from: 17662836    to: 17666422    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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