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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                   --------->KAN4(2)
                                                 <------ZmHOX2a(2)
                                               <------ZmHOX2a(1)
                                         --------->ANAC58
                                         <---------TGA1a
                                         --------->ANAC46
                                         --------->ANAC58
                                         --------->ANAC55(2)
                                         --------->bZIP60(2)
                                         --------->ANAC55(1)
                                         <---------ANAC55(2)
                                         <---------O2
                                        ------>NtERF2
         <----------DOF2              <------NtERF2--------->WOX13(1)
         ==========================================bZIP_DOF
      ------>ZmHOX2a(1)             --------->ANAC46                                            ----
<-----------ARR10                   --------->RAP2.6(2)                                        <----
-->ARR14(2)               --------->ANAC46    --------->ICU4                                   -----
---ARR14(2)            <---------ETT(2)<---------ALFIN1    --------->ARR14(2)                 <-----
->At4g35610            --------->DEAR3(1)--------->TGA1a   <---------ARR14(2)               <-------
--At4g35610            <---------DEAR3(1)--------->O2    <---------ALFIN1             <------ZmHOX2a(2)
 
ccacatctcctcctttcgcataaacgtcgacgagaccagtcgccacgtaaggatcaatccccaatccgaatttaagaacatgggtatggatcaattttcc  17573500
                                                         <---------At4g35610
                                                       <---------HSFB2a(2)                     <----
----->LBD16                   ---------->DOF2   <--------P     --------->ANAC58         <---------ANAC58
-----HSFB2a(2)         <----------ID1        <---------TOE2(3) --------->ANAC58         <---------ANAC58
---->HSFB2a(2)     ---------->DOF2      --------->ATHB12 --------->At4g35610       <------ZmHOX2a(1)
----LBD16    <---------ARR11(3)    --------->ZAT14  <---------GLK1(1)        --------->DAG2<------MYB46(1)
----GT1      --------->ARR11(3) ----------->GT1<-------GAMYB ---------->DOF2---------->DOF2<------MYB83
 
ggacttagttgagcaagatttcaaaagcgacgagaaagtaaactcattggggttgatttcagaagaaagcaattgaacataaagcaggaaggcttggtct  17573600
                                 ----------->HVH21
                                --------->At5g28300
                               <---------MYB46(3)
                              <---------DEAR3(1)
                              <---------ANAC46
                             --------->ATERF1(1)
                             <------NtERF2
                             ------>NtERF2
                             <---------ABI4(1)
                            <---------RRTF1(1)
                            <---------RAP2.3(1)
                           <---------ANAC46
                           <---------ANAC58
                           <---------RAP2.3(3)
                           <---------RRTF1(3)
                           <---------ANAC58
                           <---------RRTF1(2)                                                     --
                           <---------RAP2.6(2)                                                   ---
                           <---------DEAR3(1)                                                   <---
                      --------->ATHB12                                                          <---
                     <---------YAB1                                                           <-----
     <---------MYB52(1)   <---------LBD16                      --------->At4g35610       <---------ARR14(2)
     --------->DOF5.7(2)<---------WOX13(1)                     ----------->GT1           --------->ARR14(2)
    <---------RAP2.6(3)<---------ANAC58 =====================HOX2a_HOX2a              <---------ANAC58
    <-------GAMYB <---------ZAT6<------NtERF2                 <---------MYB46(3)      <---------ANAC58
    --------->At5g28300<---------ANAC58 =========================HOX2a_HOX2a       --------->ALFIN1
 ------>NtERF2    --------->ALFIN1      <------ZmHOX2a(1) ------>ZmHOX2a(2)  --------->MYB52(1) <---
------DOF2    <------NtERF2<---------RAP2.3(2)        ------>ZmHOX2a(2)---------->DOF2<---------ANAC46
 
ttgaggccgttaatggaggcagtgttgattgcggcggtgaagaggaacaagtctggatcgatcgtctggtgaaataaagccaacgagtggcgaattttgc  17573700
                                                                                     <---------ARR14(2)
     <---------ANAC58                                                           <---------ANAC58
     <---------ANAC46                                                           <---------ANAC46
     <---------ANAC58                                              <---------ANAC46  --------->ARR14(2)
------->ALFIN1           <---------TOE2(3)                      ----------->HVH21  ----------->ARR10
------>LBD16         <---------ANAC58                           <---------YAB1  <---------ANAC58
------ANAC46         <---------ANAC58                    <------ZmHOX2a(1)     <-------TEIL  <------
------ANAC58    --------->ALFIN1                       --------->ALFIN1     --------->ZAT2  <-------
----At5g28300<---------DEAR3(1)                       <------ZmHOX2a(1)     --------->At4g35610
------ANAC58------->TEIL <---------TOE1(3)       --------->ALFIN1 <---------LBD16--------->LBD16
 
cgtgggaagcgtatgcacggtggagcttgaggtttagaactgggtaacgagggtggaggaggaggttatgacggagaatagctgcgtggatttggagcac  17573800
                                                          --------->GLK1(2)
                                                         <---------ARR14(2)
                                                         <---------GLK1(2)
                                                         --------->ARR14(2)
                                                        <------NtERF2
                                                     <---------LBD16
                                                  --------->SPL7
                                                 <------NtERF2
                                               <---------ANAC46
                                              <------NtERF2
                                              --------->ATERF1(1)         --------->MYB55(2)
                                              --------->At4g35610         <---------MYB46(3)
                                              <---------At4g35610        --------->ALFIN1
                                              <---------LBD16            <---------AtMYB61
                                              --------->RAP2.3(1)        <---------DEAR3(1)
                                             <---------RAP2.3(1)      <---------ANAC58
                                             <---------ORA47(2)       <---------DEAR3(1)
                                             ------>NtERF2--------->ARR14(2) <---------MYB46(3)
                                             <---------ATERF1(1)      <---------ANAC46
                                             <---------RAP2.6(1)      <---------ANAC58
                                             <---------ERF1       ==================================
                                             <---------RRTF1(1)   <-------GAMYB
                                            <---------RRTF1(2)    --------->ATERF1(1)
                                            <---------RRTF1(3)   --------->MYB55(2)
                                            <---------RAP2.6(2)  <---------MYB46(3)
                                            --------->ATERF1(2)  <---------DEAR3(2)
                                            <---------RAP2.3(2) <---------DREB2C(2)
                                            <---------DEAR3(1)  <---------ANAC58                  --
      --------->ATHB12                      <---------ATERF1(2) <---------ANAC46                  --
      <---------ICU4                        <---------DREB2C(2) <---------ANAC58 --------->MYB52(1)
     <---------YAB1                         <---------ANAC46  ======================================
<---------At4g35610     ----------->ARR10   <---------RAP2.3(3) <---------DEAR3(1)         <--------
---ALFIN1         ---------->ID1         ----------->HVH21<---------ARR14(2)<---------ANAC46    ----
--ZAT18 <---------WOX13(1)               <-----------RAV1(1)  ------------>AtMYB77    <---------GLK1(2)
 
ttcatctactgattgcgatttgtcgattagaactgcaagtttctctggcggcggaaggcggaatctggcggttgcggtggtggataactgattctgcggt  17573900
      <---------ANAC58
      <---------ANAC58
     <------NtERF2
   --------->ALFIN1
 <---------bZIP60(2)
 <---------ANAC58
 <---------bZIP60(1)
 <---------TGA1a
 --------->bZIP60(1)
 >>>>>>>>>>HY5
 --------->O2
 <---------O2--------->ALFIN1
 <---------ANAC58
 --------->ANAC55(2)
 --------->TGA1a
 <---------ANAC55(1)                                                   <----------DOF2
 <---------ANAC55(2)                                         <---------YAB1
 <---------ANAC46                                     <---------AHL20(2)
----------->STF1                                  ----------->GT1     <---------ANAC58
===========MYC_MYB                          <---------AHL20(2)        <---------ANAC46
--------->TGA1                              --------->AHL20(1)        <---------ANAC58
--------->HVH21 ----------->HVH21           <---------AHL20(1)   <-----------RAV1(1)
===========MYC_MYB    --------->ANAC58      --------->AHL20(2)  <---------TOE2(3)
-LBD16<---------ANAC46--------->ANAC58     <---------ATHB12 --------->TOE2(3)
----->MYB52(2)  ----------->TGA1       ------------>CBF   <---------AHL20(2)                <-------
 
agtgacgtggcgagaagtggtgacgaagccatcttctaaatttccaataaaatgggtttaattcattaatgttgctttgaaaaacttcaggcccgtatgt  17574000
                                                                                              <-----
                                                                                        --------->AHL20(2)
                                                                                        --------->AHL20(1)
                                                                                       --------->AHL20(2)
                                                                                       <---------AHL20(2)
                                                  <---------TOE2(3)                --------->AHL20(1)
                                                 ---------->DOF2                   <---------AHL20(1)
                                                --------->AHL20(2)                 <---------AHL20(2)
                        --------->WOX13(1)      <---------AHL20(2)                 --------->AHL20(2)
                      ------------>CBF      <---------AHL20(2)               <---------At4g35610
               <---------YAB1              --------->AHL20(2)               ------->TEIL<---------AHL20(2)
--TOE2(2)    <---------ICU4                <---------AHL20(2)            <---------REM1(1)  --------
 
taatggaataggcccattattcttgatcaattacaggcccatcttataaatttaaagatgaagacgagacgagtaaatgtagctaattaattaaattata  17574100
                                                                                                  <-
                                                                                                  <-
                                                                                                 ---
                                                                                                 <--
                                                                                                <---
                                                                                               <----
                                                                              <----------ID1   <----
                                                                              ----------->GT1  <----
                                                                          --------->MYB52(1) <------
                     --------->ANAC58                                     ---------->DOF2    <------
                     --------->ANAC58                                <---------ZAT14     <---------ARR11(3)
                --------->ANAC46                                     --------->ZAT14     --------->ARR11(3)
                --------->ANAC58                                  ----------->GT1        <---------GLK1(2)
------GT1       --------->ANAC58    ----------->GT1             --------->ZAT14      ---------->DOF2
->YAB1      <-----------GT1   <---------LBD16                   <---------ZAT14----------->GT1<-----
 
ctgtatttttaaaattcacaagccaagacaaatcgtggaaagaaaaaacagcatatagagcatatagtatagtaaactaaagggataaaaaagattttgg  17574200
   ---------->DOF2
 <---------------------WRI1
-----MYB46(1)
-----MYB83                <-------GAMYB
------>ALFIN1            <---------MYB46(3)
-------MYB46(3)         <---------TOE2(3)                                 --------->REM1(1)
-----P                  <---------YAB1                           ------->TEIL
-----ANAC58         --------->ARR11(3)                          <---------AtLEC2
---GAMYB            <---------ARR11(3)     ---------->DOF2  --------->CCA1(2)
-----ANAC58         <---------GLK1(2)    <------ZmHOX2a(2) <---------ARR11(3)   <---------TOE2(3)
---YAB1  <---------ARR11(3)             <---------ARR11(3) --------->ARR14(2)  ---------->DOF2
---TOE2(3)<------ZmHOX2a(2)       ---------->DOF2          <---------ARR14(2)<---------MYB52(2)
----MYB46(3)---------->DOF2   <----------ID1         <-----------GT1    ------>ZmHOX2a(1)       ----
 
ttggggcaaagagatcaaagaaagattttggttgagacaaagagatcaaagaaattttacaatatatgcatgttcctacaactaaagtaatagtcaagaa  17574300
                                                                    ----------->GT1             <---
                                                                    <----------ID1           -------
       <-----------GT1 ---------->DOF2                            ---------->DOF2     <----------ID1
--------->AHL20(2) --------->YAB1    <----------ID1         ---------->DOF2   --------->ALFIN1  ----
<---------AHL20(2)----------------->AGL3               <---------ANAC46    --------->DAG2  ---------
------->GT1  --------->YAB1 ---------->DOF2            ----------->GT1    ---------->DOF2<XXXXXXXXXX
 
gattaaaattttacatttgtaatcaaaaaaggaaagaagagggacaaaacctagaggggagtgaaaagaaaaagaaaaaaagtgggaacgagacaaaagg  17574400
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AGI:  At4g37380.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71956.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77232.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 17572034    to: 17573932    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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