Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           ------->GAMYB                                                         --------->AtMYB61                                                        --------->MYB46(3)                                                        <---------MYB55(2)                                                       ------>MYB46(1)                                                       ------>MYB83                                                       -------->P                                                      ------>MYB83                                                      ------>MYB46(1)                                                      <---------ALFIN1                                                    ------->GAMYB                                                   --------->ANAC58                                                   --------->ANAC58                                                  --------->ANAC58                                                  --------->ANAC58                                                  -------->P                                              --------->ANAC58      <----------DOF2                         --------->ANAC46                         --------->ANAC58   <---------ARR11(3)                         --------->ANAC58  --------->GLK1(1)      --------->ANAC46   --------->ARR11(3)                      ------>ZmHOX2a(1) --------->LBD16           --------->ANAC58 ----------GT1                            --------->TOE2(3)<---------LBD16            --------->LBD16 -->ANAC46                         ------>ZmHOX2a(1)--------->MYB46(3)     <---------ICU4   ataactatctttttcagtcatttcatcaaacaacttcctcgcttcctcaagcaacccaacctccgcatacccattaaccattacattccacgaacacaaa  17500200                                         --------->ZAT2                                        ------>MYB83                                        ------>MYB46(1)                                        --------->ANAC58                                      ------->GAMYB                                   --------->WOX13(1)                                  --------->MYB46(3)                            --------->LBD16                           <---------ANAC55(1)                           <---------ANAC46                                --------->ARR14(2)                           <---------ANAC58          <---------ANAC46      <---------ARR14(2)                           <---------ANAC58  <-----------------AGL1      --------->HSFB2a(1)    <----                         ------>MYB46(1)--------->ANAC46                 --------->HSFC1(2) <--------                       --------->AtMYB61--------->ANAC58                 <---------DEAR3(2) ---------                    <---------ALFIN1-------->P<---------ALFIN1           <---------HSFB2a(1)<--------             <---------ANAC46 <-------TEIL  -------->P             ---------->DOF2 <-----------GT1         <----------DOF2 ------>MYB83--------->MYB46(3)   <-------TEIL   <---------HSFC1(2)<---------   tctctattcggcatttcgtcgaacaccttccgtgcatcaaccaagctaccacatttcgcatacattctcaaaagacggttccatataacaatcccaggta  17500300                                                   <-------PIF4                                                   ------->MYC2                                                   <-------MYC4                                                   <-------MYC2                                     <                                                   ------->PIF5                                     <                                                   ------->MYC4                                 <----                                                   ------->MYC3                                 -----                                                   <-------MYC3                                ------                                                   ------->PIF4                                ------ ---TEIL                                           <-------PIF5                              <------- -TOE1(2)                                         --------->ANAC55(2)              --------->ICU4   < >LBD16                   ------->TEIL            <---------ANAC55(2)              <---------ATHB12<- -TOE2(2)            <---------AtLEC2            ------------>OsbHLH66           <---------------AGL15 --RAV1(2)  ------>ZmHOX2a(1)    <-----------GT1<------------OsbHLH66            --------------->AGL15   caaacccagaagtcctaatgtgttcatggaccttcttaccttcttcaagagcacgtgtttggctacaaacttgaatgagattgcaataagtagaagcagg  17500400 ---------ANAC58 ---------ANAC46 ---PIF5                                            --------->ANAC46 -->PIF5   <---------ALFIN1                      --------->ETT(2)           ------>MYB83 --->ZAT2 ----------->HVH21                      <---------ETT(2)           ------>MYB46(1) --->At4g35610 <---------HSFB2a(2)         --------->GLK1(2)           --------->REM1(1)      <------ ----RAV1(2)   <-----------RAV1(2)      <---------ARR11(3)          <---------ANAC58  --------->ZAT6 ---------ANAC58             <---------GLK1(2)   <---------ZAT18    <---------ANAC58 --------->At4g35610 -----NtERF2   --------->HSFB2a(2)      --------->ARR11(3)  --------->TOE2(3)<---------ARR11(1)   tggcttcttagcccgacccagaagttgaacagcttctcttaagagcttctgtccacataatacatcaatggcttcaccaaatctattagctctacataat  17500500                 --------->ORA47(1)                --------->DEAR3(1)             --------->AtMYB61             <---------ALFIN1                                         ----------->GT1             --------->DEAR3(1)                                       <---------ANAC58       --------->ANAC46                                               <---------ANAC46 <---------GLK1(1)     <---------ALFIN1                                                 <---------ANAC58 <XXXXXXXXXXXXX     --------->AtMYB61                                               <-----------------------TaNAC69(2)    --------->ANAC46                      <----------DOF2    --------->ZAT14       <---------WOX13(1)   ----------->RAV1(1)                    <---------DAG2     <---------ZAT14    <---------YAB1      -  <---------ALFIN1   ------>ZmHOX2a(1) --------->ARR11(3)   <-----------HVH21--------->ICU4         < ---ICU4  --------->ANAC46             <---------ARR11(3)   <----------DOF2---------->DOF2   <-------   cgctccaccacaacaccaccgtcctcatggttcggattgaagaactttttatctgaaaaccgcttcagtgaggcgtgaaaagatgatagatttctcttta  17500600                                                                                              <------NtERF2                                                                                             ------>NtERF2                                                                                             <-------                                                                                             --------                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                           <------NtERF2                                                                                           --------->At4g35610                                                                                           --------->ATERF1(1)                                                                                           <---------At4g35610                                                                                           <---------LBD16                                                                                          <---------ATERF1(1)                                                                                          <---------RRTF1(1)                                                                                          <---------RAP2.3(1)                                                                                          ------>NtERF2                                                                                          <---------ORA47(2)                                                                                          <---------DEAR3(2)                                                                                          <---------ERF1                                                                                         <---------DREB2C(2)                                                                                         <---------RAP2.3(3)                                                                                         <---------DEAR3(1)                                                                                         <---------At1g77200                                                                                       <-----------HVH21                                                                                    ------>ZmHOX2a(2)                                                                                   <------ZmHOX2a(2)                                                                                  --------->ARR14(3)                                                                                  <-----------ARR10                                                                                  <---------AGP1-----                                                                                  <---------ARR11(3)                                                                                  --------->ARR11(3) XXXXXXXMIR159A ----------->GT1                                                   --------->ARR14(2) -------->AHL20(2)                   <---------WOX13(1)                           <---------ARR14(2) ---------AHL20(2)     <----------DOF2 --------->ATHB12        ---------->DOF2    <---------ARR14(3) ---DOF2--------->AtLEC2   ---------->ID1 <-------TEIL --------->AtMYB61      ---------->DOF2<-------   atataaatccatggagagtagttaactttctcgcatttgaatgattcatcttcttcaccaaaacaaaaagagttcaaattcaaagatctcgtcggcggca  17500700                                                       --------->ARR14(2)                                                       <---------ARR14(2)     --------->GLK1(1)                               <---------HSFB2a(1)     <---------GLK1(1)                               --------->HSFB2a(1) --RAP2.3(1)                                         <---------HSFC1(2) ->RAP2.6(2)                                         --------->HSFC1(2) -DEAR3(1)                                          <---------TOE2(2) >ATERF1(2)        <----------DOF2         ----------->HVH21 -ATERF1(2)       <---------ANAC58        <---------MYB59  ------------>CBF      ----------->GT1 ------>RAV1(1)   <---------ANAC58       ----------->RAV1(2)  --------->GLK1(2)---------->DOF2------- --ATERF1(1)  <------------CBF          -------->P  <---------TOE1(2)        --------->YAB1  --------   acataagaaatccaccgattgctttactcttaagaaaccctctacctgacttcgaaggttccacaatctttgtaaaaaatcaaaagtaaaaacaaaaaag  17500800                                                           --------->ANAC58                                                           --------->ANAC58                                                           --------->ANAC46                                                         <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <xxxxxxxxxxxxxxxsmallRNA(si3)                                                         <xxxxxxxxxxxxxxxsmallRNA(le3)                                                        <---------SPL7                                                        <xxxxxxxxxxxxxxxxsmallRNA(le3)                                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                        <xxxxxxxxxxxxxxxsmallRNA(le3)                                                       <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                       <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                       <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <xxxxxxxxxxxxxxxsmallRNA(le3)                                                       <xxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                                       <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                      <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                                      <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                      <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                      <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                                     --------->At4g35610                                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                   --------->MYB46(3)                                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                ------>ZmHOX2a(1)                                                <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                               <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                               <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                               <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                               <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           --------->GLK1(1)                                           <---------GLK1(1)                                          <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                          <---------ARR11(3)                                          --------->ARR14(2)                                          <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          <---------ARR14(2)                                          <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxsmallRNA(se3)                                          --------->ARR11(3)                                    --------->ANAC58 <xxxxxxxxxxxxxxxxsmallRNA(s)                                    --------->ANAC58<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <---------ANAC46 <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            ------>ZmHOX2a(1)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                           <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxsmallRNA(si3)                           <---------LBD16<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          ----------->RAV1(2)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->SPL7                       <---------GLK1(1)  <xxxxxxxxxxxxxxxsmallRNA(se3)                   <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <xxxxxxxxxxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  <---------LBD16<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                <xxxxxxxxxxxxxxxxsmallRNA(s)<---------ARR11(3)               <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxsmallRNA(le3)             <xxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxsmallRNA(i)     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(s)        <xxxxxxxxxxxxxxxxsmallRNA(s)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       ------>NtERF2   --------->GLK1(1) <xxxxxxxxxxxxxxxxsmallRNA(s)       --------->LBD16<-----------HVH21<xxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------ANAC46xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(se3)      --------->LBD16 --------->ARR14(2)<xxxxxxxxxxxxxxxxsmallRNA(s)     ---------->ID1      <---------LBD16 <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxsmallRNA(i)     <---------LBD16  <---------ARR14(2)<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)*TSS    ------>NtERF2<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------At4g35610<xxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->At4g35610--------->LBD16<xxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->GLK1(1)              - -->DAG2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ARR11(3)      <---------ARR14(2)              - -->DOF2<------NtERF2<xxxxxxxxxxxxxxxxsmallRNA(s)--------->MYB52(1) --------->ARR14(2)              <   ctccgatgccgggaatcgaacccgggtctcctgggtgaaagccagatatcctaaccgctggacgacatcggatttgttgttctatctctcattaagagaa  17500900                                              <---------YAB1                                             <---------AHL20(1)                                             --------->AHL20(1)                                             --------->AHL20(2)                                            --------->AHL20(2)                                          --------->TOE2(3)                                       ------>MYB46(1)                                       ------>MYB83                                       ----------->RAV1(1)                                      --------->ANAC46                                    --------->ANAC46                     <---------AHL20(1)                                    --------->ANAC58              <--------HAHB4                                   --------->SPL7                 <---------ICU4                                 <---------SPL7   <---------AHL20(2) <---------ICU4                                <---------ANAC58  --------->AHL20(2)--------->ICU4                                <---------ANAC58 --------->AHL20(2) <---------YAB1                               --------------->AtSPL3             -------->ATHB1            --------->AHL20(2) ---------->ID1<---------AHL20(2)   --------->YAB1          --------->TOE2(3)    --------------->AtSPL8            <---------ATHB12              <-----       ----------->RAV1(1)     <---------------AtSPL8      <---------At4g35610  <---------AHL20(2) -------->AHL20(2) --------->ARR11(3)--------->MYB46(3)    --------->At4g35610<---------AHL20(2) ---------->TBP    <---------ARR11(3)<---------MYB59  <---------AHL20(2) --------->AHL20(2) --------- ---------AHL20(2) <---------GLK1(2)--------->ANAC58  --------->AHL20(2) <---------AHL20(2) ---------   atataaatccaacattatatagattttgtttttgtcgtacccaacattatatttaattttttgctgaatcattattttattttaaaatggaatcacgctt  17501000      <---------ANAC58      <---------ANAC58                                                              <---------DAG2  <---------ANAC46                   <---------ICU4                              <-----------GT1  <---------ANAC58                  --------->ICU4                         <---------ATHB12  <---------ANAC58                  <---------YAB1                    ------>MYB83  --------->TOE2(3) -----DOF2                       <---------AHL20(2)                   ------>MYB46(1) >ANAC58                <---------GLK1(2)        <-----------GT1      --------->AtLEC2      <-------- >ANAC58   --------->ZAT6<---------ARR11(3)  <----------DOF2        --------->AtMYB61<----------DOF2   tgttccttgtttgtcactagaaaacagcatcttatttcattattcatctttttacaagataaaactaagaccatccaaacattcaaccttttagttgtag  17501100  Previous    Next  AGI:  At4g37170.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G22070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43336.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 17498574    to: 17500649    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g37175.1    Description:  pre-tRNA. tRNA-Glu (anticodon: TTC) Range:  from: 17500801    to: 17500872    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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