AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                                        <------ZmHOX2a(1)
                                                     <---------LBD16---------->DOF2    ----------->GT1
                                                <---------------AGL15   --------->ARR11(3)
   --------->LBD16                              <----------DOF2     XXXXXXXXXXXXXXXXXXXX>MIR861-3P
----------GT1          <-----------HVH21   <<<<<<<ZML2 ----------->GT1  <---------ARR11(3) ---------
--->ARR11(3)          --------->ANAC46  <---------HSFB2a(2)      --------->YAB1  --------->ANAC46
----ARR11(3)        ---------->DOF2     --------->HSFB2a(2)    --------->AHL20(2)--------->ANAC58
--->AHL20(1)      <---------YAB1        <---------HSFC1(1)    --------->YAB1  <---------REM1(2)
----AHL20(1)  <----------DOF2           --------->HSFC1(1)   --------->AHL20(2)  --------->ANAC58
 
ttttccctcgaaattgtctttataaaagtcacagaaacattttctagaactctttatcaggaaaataaaaataaagatgtcttcaaggaatcgaaaaaat  17442200
                                               <---------TOE2(3)
                                               --------->MYB59                     <---------ICU4
                                   --------->YAB1                                 <---------AHL20(2)
                                  --------->AHL20(2)             <---------MYB59  <---------ATHB51
    --------->AHL20(1)         <---------AHL20(2)     ---------->DOF2             --------->AHL20(2)
    <---------ARR11(3)        <---------AHL20(2)--------->HSFB2a(1)             --------->YAB1
>AHL20(2)                     --------->AHL20(2)<---------HSFB2a(1)        ----------->GT1     -----
 
acagcaatatactaaatagaaaatgctatgaaattaaataaaaatttagtaaggttccaaagacactacttaactagagagaaaaataattccaactagc  17442300
                                                               <---------ANAC58
                                                               <---------ANAC58
                                                         <---------AHL20(2)
                   <---------------AGL15                <---------YAB1
                   --------------->AGL15             <---------YAB1
                   =================================================================MADS_MADS
                <---------AHL20(2)                <---------YAB1
    ------->GAMYB <---------ANAC58              <---------AHL20(2)                    ---------->ID1
   --------->MYB46(3)                          --------->AHL20(1)       <---------ATHB12
   <---------MYB52(2)          ----------->GT1 --------->AHL20(2)   --------------->AGL15
 ----------->RAV1(1)      <---------TOE2(3)    <---------AHL20(1)   <---------------AGL15
--------->REM1(1) <---------ANAC58      XXXXXXXXXXXXXXXXXXXX>MIR426 ================================
---->ZAT6  <---------ATHB12  --------->GLK1(2) <---------AHL20(2)  ----------------->AGL1    <------
 
tctacaacaaacaaatcatttacttgtttaagaatcgaaaaatttagaaatttattcttattatttgtttgcccaattaagtcgctcttggcccaatact  17442400
                                                                                                   <
           <---------ANAC46      ------>MYB83                                                  <----
      --------->ATHB12 <------ZmHOX2a(2)                                     <---------AHL20(2)-----
    --------------->AGL15        -------->P              ---------->DOF2     --------->AHL20(2)<----
   <---------ANAC55(2)<---------ARR11(3)              --------->AHL20(2)<---------AHL20(1)    ------
   --------->ANAC55(2)--------->ARR11(3)       --------->AHL20(2)       <---------AHL20(2)    <-----
====================MADS_MADS    ------>MYB46(1)      <---------AHL20(2)--------->AHL20(2)    <-----
---ICU4 <---------WOX13(1)   -------->P        <---------AHL20(2)  <---------AHL20(2)   ------->TEIL
 
tgcatcacttgattgagtagaagaagatcacttaccaactctcaaaccatttaaaaattaaaaagcatagtttattttatttaaatatgtgtatgtaata  17442500
                    --------->ANAC46
      --------->ANAC58
      --------->ANAC46   --------->ANAC46
      --------->ANAC58 --------->TOE2(3)              <---------AHL20(1)
-----------GT1  <-----------GT1                 --------->YAB1
----ATHB1   --------->AHL20(1)           --------->At5g28300
--->HAHB4   <---------ARR11(3)          ----------->GT1              ----------->GT1
-----ICU4   --------->ARR11(3)          --------->LBD16<---------AHL20(2)      ---------->DOF2
--->ICU4    --------->AHL20(2)         --------->LBD16--------->AHL20(2)    --------->AHL20(2)
----ATHB51  <---------AHL20(2)        <---------LBD16 <---------AHL20(2)   --------->AHL20(2)
----YAB1    <---------AHL20(1)    --------->YAB1----------->GT1  ---------->DOF2           ---------
 
attcaccacaagaaatatattacaaaccacaaaactataatcccggtaaaatagtaattaatttcttcaaaagtgtaaataaaaaagaagagacataatt  17442600
                                                                              <---------DOF5.7(2)
                                    <---------ALFIN1                        --------->DOF5.7(2)
                          <---------CCA1(1)                                <-------GAMYB
                          <---------RVE1(1)                      <---------ARR11(3)
      ----------->RAV1(1)<---------ARR11(3)                     <---------CCA1(2)                ---
--------->YAB1           --------->ARR11(3)                   --------->YAB1<---------MYB52(1)  <---
>ICU4*TSS               --------->YAB1              <<<<<<<<<TBF1--------->ARR11(3)       <---------
 
tagtcatagccacataaaaaatggcgatgatattttgcaacactctctactcttcttcttctccatcatatctctcgccgttaacttcaaaaccgtcgcg  17442700
                                                                                                   -
                                                                                                   -
                                                                                                   -
                                                                                                  <-
                                                                                                  <-
                                                                                                 ---
                                                                                                 <--
                                                                                               <----
                                                             --------->LBD16                 -------
                                                             ------>NtERF2                   -------
                                                             --------->At4g35610   --------->LBD16--
      <---------GLK1(2)                                     --------->DEAR3(1)     <---------MYB52(1)
  ---------->DOF2                                        --------->DEAR3(1)  <---------GLK1(1)------
------>GLK1(2)       --------->At4g35610                 --------->AtMYB61   --------->GLK1(1)------
------GLK1(2)        <---------At4g35610       --------->ANAC46--------->DEAR3(1)<---------LBD16 ---
--HVH21--------->GLK1(2)             --------->AtLEC2<------ZmHOX2a(2)<---------AHL20(2) <----------
 
attctcaaagaatctcagacctcgagctcaattccagtccatggaagaccacgacgatcacctccgccgaaaatttatggagttcccgtatgtgtcaccc  17442800
       --------->At4g35610
    <---------At4g35610
--------->LBD16
-------->ANAC46
-------->ANAC58
-------->ANAC58
------MYC3
--------LBD16
------>O2
-------O2                              --------->GLK1(2)
-----ALFIN1                      --------->ALFIN1                             <-----------RAV1(2)
-->ANAC58           ------>ZmHOX2a(2)  --------->ARR14(2)                     <---------HSFB2a(2)
-->ANAC58         <---------ARR11(3)   <---------ARR14(2)                ------>MYB46(1)
----->MYC3        --------->ARR11(3)  <---------GLK1(2)        <---------ANAC46       --------->ANAC46
--->DEAR3(1)   <--------P  --------->ETT(2)        --------->YAB1        ------>MYB83 --------->ANAC58
--->MYB46(3)<---------YAB1 <---------ETT(2)       <---------ATHB12    --------->MYB46(3)  --------->HSFC1(2)
------>ANAC46--------->ATHB12 <---------DEAR3(1)--------->WOX13(1)<-----------HVH21   --------->ANAC58
-HVH21 <---------At4g35610--------->DDF1     ------>NtERF2  ------>ZmHOX2a(1) --------->HSFB2a(2)
 
acgcggaagcagctcatggttgatctcatgtcgacggtggagaatcgcctccaatcacaactccttccctgtaacctccctccagatgtacgaaacttca  17442900
                                                <-----------ARR10
                                                --------->ARR14(2)
                                                --------->ARR11(3)
                                                <---------ARR14(2)
                                                <---------ARR11(3)
                                            <------NtERF2
                                           ------>NtERF2
                                           ----------->RAV1(1)
                                          <---------ETT(2)
                                          ----------->HVH21
                                          --------->DEAR3(1)
                                         --------->RAP2.3(1)
                                        <---------ATERF1(1)
                                        --------->LBD16
                   <---------HSFC1(2) <---------LBD16
               --------->DEAR3(1)    --------->ARR14(1)
             <---------At4g35610     <------ZmHOX2a(2)
             --------->LBD16        --------->ARR14(2)
             --------->At4g35610    <---------GLK1(2)         --------->TOE1(2)
             ------>NtERF2          --------->ARR11(3)       <---------ANAC58
          <---------ATERF1(1)       <---------ARR14(2)       <---------ANAC58
         --------->ARR14(2)         --------->AGP1          --------->MYB52(2)
         <---------ARR14(2)        --------->At4g35610    <---------MYB52(1)
    --------->MYB52(1)<---------CCA1(2)--------->TOE1(2) --------->LBD16                        <---
 --------->TOE1(3) --------->HSFC1(2)--------->CCA1(2)  --------->ANAC46                   <--------
 --------->TOE2(3) --------->HSFB2a(1)------>ZmHOX2a(2)<---------LBD16   <-----------GT1<---------MYB52(1)
 
ataaccctaacggttccgccgaagcatctcttcatatcagatccggcgacaaatcttctccggtacttgcgacgattaactctgtttttcagttatgaga  17443000
                             <---------At4g35610
                  <---------ANAC58
                  <---------ANAC58     <---------WOX13(1)                            --------->TOE1(3)
              <---------ANAC58        <---------ANAC58                               --------->TOE2(3)
    <-----------GT1          --------->At4g35610                               --------->YAB1     --
---ZmHOX2a(2) <---------AtLEC2        <---------ANAC46                         <---------ICU4     <-
-YAB1         <---------ANAC58        <---------ANAC58                        <---------ATHB12    <-
 
tcgaaattgactgttttgcatgcttgttttagagctcaattgcttgattttaagtagaaacagacttcaatttcgatgtaaatcataaccctaaaaaaaa  17443100
<- Previous    Next ->

AGI:  At4g36988.1   
Description:  CPuORF49 (Conserved peptide upstream open reading frame 49)
Range:  from: 17440171    to: 17442145    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At4g36990.1   
Description:  HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor. Identical to Heat stress transcription factor B-1 (HSFB1) [Arabidopsis Thaliana] (GB:Q96320;GB:O23186); similar to AT-HSFB2B (Arabidopsis thaliana heat shock transcription factor B2B), transcription factor [Arabidopsis thaliana] (TAIR:AT4G11660.1); similar to heat shock factor 4 [Brassica rapa] (GB:ABV89640.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232)
Range:  from: 17440171    to: 17442145    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At4g37000.1   
Description:  ACD2 (ACCELERATED CELL DEATH 2). Identical to Red chlorophyll catabolite reductase, chloroplast precursor (RCCR) [Arabidopsis Thaliana] (GB:Q8LDU4;GB:O23185); similar to red chlorophyll catabolite reductase [Brassica napus] (GB:CAJ80767.1); contains InterPro domain Red chlorophyll catabolite reductase; (InterPro:IPR009439)
Range:  from: 17442606    to: 17443849    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version