AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                                                                  <---------YAB1
                                                                                 <---------TOE2(3)
                                                                              <---------WOX13(1)
                                                                          <---------MYB59
                                                                          <---------MYB111(1)
                                                                         --------->ANAC55(2)       -
                                                                         --------->ANAC46          -
               <---------TOE1(3)            ---------->DOF2              <---------ANAC55(2)      --
               <---------TOE2(3)           ------->GAMYB                 --------->ANAC55(1)     ---
              <---------DOF5.7(2)         --------->ANAC46             <---------ALFIN1--------->AHL20(2)
              --------->MYB52(1)       <---------WRKY38(1)          <---------WRKY38(1)<---------AHL20(2)
            --------->DOF5.7(2)        <---------WRKY12  <---------AHL20(2) ------>MYB46(1) --------
    <---------YAB1   <---------YAB1  <-----------HVH21   --------->AHL20(2) ------>MYB83   <--------
>TOE2(3)   <---------At4g35610    <----------DOF2<-----------GT1   xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
 
tcttcgtattattcagttaacgttatgactaatttggctttgtcaacgaaagttactgattttatttgaagtcaacacctaattgatgattttaatcata  17426500
                                    ----------->GT1
           --------->YAB1          --------->ALFIN1
  ---------->DOF2              ---------->DOF2
-------->ANAC58        --------->ANAC58
-------->ANAC58        --------->ANAC58                    ------>ZmHOX2a(1)
------->DAG2         --------------->AGL15 --------->AHL20(2)      --------->AHL20(2)
------->DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    <-----------GT1 --------->YAB1
->YAB1    <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->YAB1
-ATHB12<-------TEIL <-----------------AGL1 <---------AHL20(2) ------>ZmHOX2a(1)                   <-
 
aaaagcaaagttcatgataaatcaccacgaatggcaaagtggtgatttaaatgacatttttcctcctaaaataaacagaatagaatatatgatatactta  17426600
                                      --------->ANAC58
                                      --------->ANAC58
                                  --------->ANAC46
                                 <---------ZAT18
                                 --------->ZAT18
                             <---------------AtSPL8
                             --------------->AtSPL8
                         <---------AHL20(1)
                         <---------AHL20(2)        <-----------GT1
     <---------ANAC58    --------->AHL20(2)  <---------AHL20(2)                                <----
     <---------ANAC58 --------->AHL20(2)     --------->AHL20(2)                     --------->TOE2(3)
--------At4g35610    --------->AHL20(2)<---------ATHB12    ------->TEIL             --------->TOE1(3)
 
cagctattgtttgctagtatccaaataaaaaatttgtacacaatcaatttatattcactatgtattttggttttaaaactccatataccttaagctatat  17426700
                                                                                      --------->ANAC58
                                                                                    --------->CCA1(2)
                                                                                   XXXXXXXXXXXXXXXXX
                                                                                 <---------TOE2(3)
                                                                                 <---------YAB1
                                  <---------ICU4         <---------AHL20(2)   <---------ATHB12
                           --------->ANAC58             --------->YAB1 <-----------GT1--------->ANAC58
                        <-------TEIL<---------YAB1     <---------AHL20(2)--------->ANAC46
            ----------->GT1--------->ANAC58            <---------YAB1--------->AHL20(2)            <
        <---------YAB1 --------->CCA1(2)        <---------MYB46(3)   <---------AHL20(2)        <----
-----YAB1   <---------MYB46(3)   --------->ICU4 ----------->GT1 <---------MYB59--------->YAB1<------
 
gatttagttttatgtttgttaaaaagattcaagcccattatgagggctgagttgttatattataaggcctaattaaacccaattaagataagcccattga  17426800
                                                                <---------ATHB12
                                                               ------>MYB46(1)
                                                               ------>MYB83
                                                             --------->MYB46(3)
                                                            ------------>CBF
                                                          <-----------GT1
                                                      ------->MYC3
                                                      ------->MYC4
                             --------->LBD16          ------->MYC2
                            <---------ATERF1(2)       -------->ABF1
                            --------->ATERF1(2)       <-------MYC2
                           --------->RAP2.6(3)        <-------MYC4
                           <---------LBD16           --------->TGA1a
                          =====================================MYC_MYB --------->At4g35610
                          --------->MYB52(1)         <---------O2     <---------ARR14(2)
                        =======================================bZIP_DOF<---------At4g35610
                        <----------DOF2              --------->O2     --------->ARR14(2) <---------ICU4
                        <---------SPL7               <---------ANAC55(2)                --------->ICU4
                       <---------ANAC58              --------->ANAC55(2)                <---------YAB1
XXX>MIR852             <---------ANAC58              <---------TGA1a <------NtERF2<---------DEAR3(1)
---------YAB1   <---------YAB1             ------->TEIL <-----------HVH21 ------------>CBF   <------
-----GLK1(2)<---------GLK1(2)--------->ANAC46      <---------ALFIN1 --------->LBD16 --------->At5g28300
---ATHB12 <---------ATHB12-------->P    <---------YAB1<-------MYC3<---------LBD16<---------ORA47(1)<
 
ttcttatggcccattgattcttatgggcttaccggcaaaaaacatgaatgttcaacacgtgtcaccaatcgcggagctacaatggacggtgatcatttta  17426900
      --------->KAN4(2)
     --------->HSFC1(2)                                                                            <
     <---------HSFC1(2)                                                                            <
     <---------HSFB2a(1)          ---------->DOF2                                           --------
     --------->HSFB2a(1)       ------>ZmHOX2a(1)                                    --------->GLK1(2)
  <------NtERF2             ------>ZmHOX2a(1)                                       --------->ARR14(2)
 --------->LBD16       <---------ANAC58         ---------->DOF2                     <---------ARR14(2)
--------->LBD16    <---------ANAC58  ----------->GT1                               --------->GLK1(1)
---AHL20(2)        <---------ANAC58 --------->DAG2                             ----------->GT1   ---
---------LBD16  *TSS   <---------ANAC58----------->GT1                 --------->GLK1(1)--------->LBD16
 
tcgccggaaaattcccatcttcgcttgcttcctcctcaaaaggtgaaaaattagagcgagagagatagagagagatttcaaaacgaaaatccagagaaag  17427000
    --------------->AGL15
   <-----------------AGL2
   <-----------------AG
   <-----------------AGL1                                                                      -----
   =================================================================================================
   ----------------->AGL1                                    --------->ALFIN1             ----------
---------ANAC58                                       <-----------HVH21                   <---------
---------ANAC58                                     --------->DAG2                       -----------
-->DOF2                <---------MYB46(3)         ---------->DOF2                      ------->TEIL
------>ARR11(3)       <---------ANAC46       --------->GLK1(1)                      <---------ATHB12
 
ggtcttgccagtttagggcatccttgtgggtgagagagcgattgagagatttcaaaaggtcagtgtgtgagttttcgaattttcacaatgaatctaaaaa  17427100
                                                                                             <------
                                                                                             <------
                                                                                        <---------ICU4
    --------->AHL20(2)                                                                 <---------YAB1
 ----------->GT1                                                                       --------->ICU4
----------->GT1                                                                      --------->YAB1
----->DOF2                                                                          <---------YAB1
======MADS_MADS                                                   <---------YAB1  --------->YAB1
----->AGL15                                                     --------->YAB1   <---------YAB1
------AGL15             --------->TOE2(3)                      --------->ICU4    --------->ICU4
------>AGL3   <-------TEIL                                   --------->YAB1<---------MYB46(3)<------
 
aagaagataaatttagtttcatttgtttcttaatcggagagaaatttgtatgccccaaaaacaaaaatgatgaattggtgtttgatgatgataattgtgt  17427200
                                         <-------TEIL
                                        --------->CCA1(2)
                                        --------->ARR14(1)
                                       --------->ARR11(1)
                                       --------->TOE1(2)
                          <------ZmHOX2a(1)
                       <-----------RAV1(2)    <---------ZAT6                               <--------
                   <---------ANAC58    <---------ARR14(2)                                  <--------
 ---------->DOF2   <---------ANAC46    --------->ARR14(2)                            <----------DOF2
---ANAC58          <---------ANAC58  ----------->ARR10                            --------->GLK1(2)
---ANAC46   <---------ANAC58       <------ZmHOX2a(1)                             <---------GLK1(2)
---ANAC58   <---------ANAC58 <------ZmHOX2a(1)--------->ALFIN1           ---------->DOF2   <--------
 
gtgagaaagagatgtgcttgtggtttgcaggaggaagaggaagatacgagtgtgagagagatttagagggagagaagaaagagagattctttttgagtgt  17427300
                      ------>ZmHOX2a(2)
                     --------->CCA1(2)
                     <------ZmHOX2a(2)
                    --------->ARR11(3)
                    <-----------ARR10
                    <---------AGP1
                    --------->ARR14(2)
                    --------->AGP1
                    <---------ARR14(2)
                <---------ZAT14                          ----------->GT1   --------->ANAC55(2)
                <---------At4g35610                 <---------ANAC58       --------->ANAC46
                --------->ZAT14                     <---------ANAC58       --------->ANAC55(1)
<---------TOE1(3)   <---------ARR11(3)             --------->HSFC1(2)      --------->ANAC58
<---------TOE2(3)  <---------CCA1(2)               <---------HSFC1(2)      --------->ANAC58       <-
-ANAC58      ------>ZmHOX2a(1)<-----------GT1 --------->ANAC58     <<<<<<<<<MYB2              <-----
-ANAC58      ================HOX2a_HOX2a      --------->ANAC58   <------MYB46(1)   <---------At4g35610
-ANAC46      ===============HOX2a_HOX2a     --------->MYB52(1)   <------MYB83      --------->At4g35610
 
gttagggtttcatttcctctgcagatctacatttatctcttctcatggaacggaagcttgtggtaatttggttttcacacgcattgagctcaagttttta  17427400
<- Previous    Next ->

AGI:  At4g36960.1   
Description:  RNA recognition motif (RRM)-containing protein. similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT3G07810.1); similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT3G07810.2); similar to Os01g0945800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045380.1); similar to RNA-binding like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD88026.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:  from: 17426917    to: 17429760    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version