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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
YAB1
<---------
TOE2(3)
<---------
WOX13(1)
<---------
MYB59
<---------
MYB111(1)
--------->
ANAC55(2)
-
--------->
ANAC46
-
<---------
TOE1(3)
---------->
DOF2
<---------
ANAC55(2)
--
<---------
TOE2(3)
------->
GAMYB
--------->
ANAC55(1)
---
<---------
DOF5.7(2)
--------->
ANAC46
<---------
ALFIN1
--------->
AHL20(2)
--------->
MYB52(1)
<---------
WRKY38(1)
<---------
WRKY38(1)
<---------
AHL20(2)
--------->
DOF5.7(2)
<---------
WRKY12
<---------
AHL20(2)
------>
MYB46(1)
--------
<---------
YAB1
<---------
YAB1
<-----------
HVH21
--------->
AHL20(2)
------>
MYB83
<--------
>
TOE2(3)
<---------
At4g35610
<----------
DOF2
<-----------
GT1
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
tcttcgtattattcagttaacgttatgactaatttggctttgtcaacgaaagttactgattttatttgaagtcaacacctaattgatgattttaatcata
17426500
----------->
GT1
--------->
YAB1
--------->
ALFIN1
---------->
DOF2
---------->
DOF2
-------->
ANAC58
--------->
ANAC58
-------->
ANAC58
--------->
ANAC58
------>
ZmHOX2a(1)
------->
DAG2
--------------->
AGL15
--------->
AHL20(2)
--------->
AHL20(2)
------->
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
<-----------
GT1
--------->
YAB1
->
YAB1
<---------
YAB1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
YAB1
-
ATHB12
<-------
TEIL
<-----------------
AGL1
<---------
AHL20(2)
------>
ZmHOX2a(1)
<-
aaaagcaaagttcatgataaatcaccacgaatggcaaagtggtgatttaaatgacatttttcctcctaaaataaacagaatagaatatatgatatactta
17426600
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
<---------
ZAT18
--------->
ZAT18
<---------------
AtSPL8
--------------->
AtSPL8
<---------
AHL20(1)
<---------
AHL20(2)
<-----------
GT1
<---------
ANAC58
--------->
AHL20(2)
<---------
AHL20(2)
<----
<---------
ANAC58
--------->
AHL20(2)
--------->
AHL20(2)
--------->
TOE2(3)
--------
At4g35610
--------->
AHL20(2)
<---------
ATHB12
------->
TEIL
--------->
TOE1(3)
cagctattgtttgctagtatccaaataaaaaatttgtacacaatcaatttatattcactatgtattttggttttaaaactccatataccttaagctatat
17426700
--------->
ANAC58
--------->
CCA1(2)
XXXXXXXXXXXXXXXXX
<---------
TOE2(3)
<---------
YAB1
<---------
ICU4
<---------
AHL20(2)
<---------
ATHB12
--------->
ANAC58
--------->
YAB1
<-----------
GT1
--------->
ANAC58
<-------
TEIL
<---------
YAB1
<---------
AHL20(2)
--------->
ANAC46
----------->
GT1
--------->
ANAC58
<---------
YAB1
--------->
AHL20(2)
<
<---------
YAB1
--------->
CCA1(2)
<---------
MYB46(3)
<---------
AHL20(2)
<----
-----
YAB1
<---------
MYB46(3)
--------->
ICU4
----------->
GT1
<---------
MYB59
--------->
YAB1
<------
gatttagttttatgtttgttaaaaagattcaagcccattatgagggctgagttgttatattataaggcctaattaaacccaattaagataagcccattga
17426800
<---------
ATHB12
------>
MYB46(1)
------>
MYB83
--------->
MYB46(3)
------------>
CBF
<-----------
GT1
------->
MYC3
------->
MYC4
--------->
LBD16
------->
MYC2
<---------
ATERF1(2)
-------->
ABF1
--------->
ATERF1(2)
<-------
MYC2
--------->
RAP2.6(3)
<-------
MYC4
<---------
LBD16
--------->
TGA1a
=====================================
MYC_MYB
--------->
At4g35610
--------->
MYB52(1)
<---------
O2
<---------
ARR14(2)
=======================================
bZIP_DOF
<---------
At4g35610
<----------
DOF2
--------->
O2
--------->
ARR14(2)
<---------
ICU4
<---------
SPL7
<---------
ANAC55(2)
--------->
ICU4
<---------
ANAC58
--------->
ANAC55(2)
<---------
YAB1
XXX>
MIR852
<---------
ANAC58
<---------
TGA1a
<------
NtERF2
<---------
DEAR3(1)
---------
YAB1
<---------
YAB1
------->
TEIL
<-----------
HVH21
------------>
CBF
<------
-----
GLK1(2)
<---------
GLK1(2)
--------->
ANAC46
<---------
ALFIN1
--------->
LBD16
--------->
At5g28300
---
ATHB12
<---------
ATHB12
-------->
P
<---------
YAB1
<-------
MYC3
<---------
LBD16
<---------
ORA47(1)
<
ttcttatggcccattgattcttatgggcttaccggcaaaaaacatgaatgttcaacacgtgtcaccaatcgcggagctacaatggacggtgatcatttta
17426900
--------->
KAN4(2)
--------->
HSFC1(2)
<
<---------
HSFC1(2)
<
<---------
HSFB2a(1)
---------->
DOF2
--------
--------->
HSFB2a(1)
------>
ZmHOX2a(1)
--------->
GLK1(2)
<------
NtERF2
------>
ZmHOX2a(1)
--------->
ARR14(2)
--------->
LBD16
<---------
ANAC58
---------->
DOF2
<---------
ARR14(2)
--------->
LBD16
<---------
ANAC58
----------->
GT1
--------->
GLK1(1)
---
AHL20(2)
<---------
ANAC58
--------->
DAG2
----------->
GT1
---
---------
LBD16
*
TSS
<---------
ANAC58
----------->
GT1
--------->
GLK1(1)
--------->
LBD16
tcgccggaaaattccc
atcttcgcttgcttcctcctcaaaaggtgaaaaattagagcgagagagatagagagagatttcaaaacgaaaatccagagaaag
17427000
--------------->
AGL15
<-----------------
AGL2
<-----------------
AG
<-----------------
AGL1
-----
=================================================================================================
----------------->
AGL1
--------->
ALFIN1
----------
---------
ANAC58
<-----------
HVH21
<---------
---------
ANAC58
--------->
DAG2
-----------
-->
DOF2
<---------
MYB46(3)
---------->
DOF2
------->
TEIL
------>
ARR11(3)
<---------
ANAC46
--------->
GLK1(1)
<---------
ATHB12
ggtcttgccagtttagggcatccttgtgggtgagagagcgattgagagatttcaaaag
gtcagtgtgtgagttttcgaattttcacaatgaatctaaaaa
17427100
<------
<------
<---------
ICU4
--------->
AHL20(2)
<---------
YAB1
----------->
GT1
--------->
ICU4
----------->
GT1
--------->
YAB1
----->
DOF2
<---------
YAB1
======
MADS_MADS
<---------
YAB1
--------->
YAB1
----->
AGL15
--------->
YAB1
<---------
YAB1
------
AGL15
--------->
TOE2(3)
--------->
ICU4
--------->
ICU4
------>
AGL3
<-------
TEIL
--------->
YAB1
<---------
MYB46(3)
<------
aagaagataaatttagtttcatttgtttcttaatcggagagaaatttgtatgccccaaaaacaaaaatgatgaattggtgtttgatgatgataattgtgt
17427200
<-------
TEIL
--------->
CCA1(2)
--------->
ARR14(1)
--------->
ARR11(1)
--------->
TOE1(2)
<------
ZmHOX2a(1)
<-----------
RAV1(2)
<---------
ZAT6
<--------
<---------
ANAC58
<---------
ARR14(2)
<--------
---------->
DOF2
<---------
ANAC46
--------->
ARR14(2)
<----------
DOF2
---
ANAC58
<---------
ANAC58
----------->
ARR10
--------->
GLK1(2)
---
ANAC46
<---------
ANAC58
<------
ZmHOX2a(1)
<---------
GLK1(2)
---
ANAC58
<---------
ANAC58
<------
ZmHOX2a(1)
--------->
ALFIN1
---------->
DOF2
<--------
gtgagaaagagatgtgcttgtggtttgcag
gaggaagaggaagatacgagtgtgagagagatttagagggagagaagaaagagagattctttttgagtgt
17427300
------>
ZmHOX2a(2)
--------->
CCA1(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<-----------
ARR10
<---------
AGP1
--------->
ARR14(2)
--------->
AGP1
<---------
ARR14(2)
<---------
ZAT14
----------->
GT1
--------->
ANAC55(2)
<---------
At4g35610
<---------
ANAC58
--------->
ANAC46
--------->
ZAT14
<---------
ANAC58
--------->
ANAC55(1)
<---------
TOE1(3)
<---------
ARR11(3)
--------->
HSFC1(2)
--------->
ANAC58
<---------
TOE2(3)
<---------
CCA1(2)
<---------
HSFC1(2)
--------->
ANAC58
<-
-
ANAC58
------>
ZmHOX2a(1)
<-----------
GT1
--------->
ANAC58
<<<<<<<<<
MYB2
<-----
-
ANAC58
================
HOX2a_HOX2a
--------->
ANAC58
<------
MYB46(1)
<---------
At4g35610
-
ANAC46
===============
HOX2a_HOX2a
--------->
MYB52(1)
<------
MYB83
--------->
At4g35610
gttagggtttcatttcctctgcagatctacatttatctcttctc
atggaacggaagcttgtg
gtaatttggttttcacacgcattgagctcaagttttta
17427400
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AGI:
At4g36960.1
Description:
RNA recognition motif (RRM)-containing protein. similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT3G07810.1); similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT3G07810.2); similar to Os01g0945800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045380.1); similar to RNA-binding like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD88026.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:
from: 17426917
to: 17429760
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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