Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <---------AHL20(2)        --------->TOE1(3)                <---------WOX13(1)       <---------ARR11(3)              --------->YAB1      ---------->DOF2              ----------->GT1   ==================================HOX2a_HOX2a              --------->ATHB12  <------ZmHOX2a(2)   ---------->DOF2       ----------->HVH21 --------->TOE2(3)                          <---------MYB52(2) <---------ATHB12--------->AHL20(2)      --------->ARR11(3)------>ZmHOX2a(1)     ------->GAMYB ---->HVH21  --------->ICU4   --------->At4g35610       <------ZmHOX2a(2)  --------->YAB1      <-----   caaatcaaagaatgaatgattaattctatgacagatcaaagaagaccttaaaaaatcgatcctttcgatatatcaaatcacaactgcaactaaactcata  17342300                                                  -------->ATHB1                                                  <--------ATHB1                                                  <---------ICU4                                                  <------------ATHB5                                                  --------->ATHB51                                                  --------->ATHB12                                                  --------->YAB1                                                 <---------YAB1          ------>ZmHOX2a(2)                                                 --------->ICU4         <------ZmHOX2a(2)           <---------AHL20(2)               --------->ANAC58           --------->ARR11(3)          --------->YAB1                    --------->ANAC46           <---------ARR11(3)    <----------DOF2                         --------->ANAC58           --------->ARR14(2)        ----    <---------DAG2                     <----------DOF2          <---------ATHB12                <---- <---------ALFIN1            <---------ANAC58    <---------ATHB51      <---------ARR14(2)    -------- -----TaMYB80                <---------ANAC58    <---------ATHB12--------->YAB1   ---------->DOF2<---   tgcccacttttatattaatcttggtaacatagcttattagactttcacacaataattgaatcccaaatcataagatccctaaaacaaagctataaccaaa  17342400                              --------->ANAC58                         --------->ANAC58                --------->ARR11(3)                         --------->ANAC58          <-------TEIL ----->ARR11(3)          --------->ANAC46--------->TOE2(3)<------ZmHOX2a(2)                    ------ -----GLK1(2)        <-----------GT1     <---------------AGL15                              --------- ->TOE2(3)          <---------YAB1       <----------DOF2 <---------ARR11(3) --------->ANAC46<-------- ------ARR11(3)----------->GT1--------->ANAC58  ----------->GT1   <----------DOF2       --------->YAB1   atctcagaaatgaaaacgcgttattacaagacaagctaatctactttaacaggttcaaagatcgaagactttccttccacataagtagaatcagaaatct  17342500                                                  ---------->DOF2                                            <<<<<<<<<ARR2                     <---------HSFC1(2)     --------->MYB46(3)   ----------->GT1   <---------ATHB12             >>>>>>>>>TBF1   --------->MYB52(1)   ---------->DOF2    ------------------------>ANAC81    --------->At4g35610 --->TOE2(3)      <---------HSFC1(2)  --------->ANAC58                >>>>>>>>>TBF1         <-------- >GLK1(1)         --------->HSFC1(2)  --------->ANAC58             >>>>>>>>>TBF1        ----------->GT1 -GLK1(1)    <---------------------WRI1   --------->WOX13(1) <---------TOE2(3)--------->HSFC1(2)<----   caaaacaacgactaggtcgaaacatcgaaagttaaacaccaagacaatcaaacaaagagaatgaaggaagaagaagaagaagcttacaagttgttaaatt  17342600                                                                                            <--------                                                                                            ---------                                                                                        <---------SPL7                                                                                       <---------ANAC58                                                                                  <---------GLK1(2)                                                                                  <---------ARR14(2)                                                                                  --------->ARR14(2)                                                                                --------->LBD16                                                       --------->ATHB12       <---------LBD16                                                     <---------WOX13(1)      ------>MYB46(1)------>ZmHOX2a(1)                                                 <------NtERF2               ------>MYB83   ---------                                           --------->DAG2                    -------->P<---------ANAC58                 --------->YAB1          ---------->DOF2                     --------->MYB52(1)          --------->ANAC58            --------->AHL20(2) <---------WOX13(1) --------->MYB55(1) -AHL20(2)--------->ANAC46   <---------ANAC58  <---------DEAR3(1)          <---------MYB46(2) ---TEIL  --------->ANAC58   <---------ANAC58<-----------HVH21             --------->DEAR3(1)   cgttgcaaaaacacgaaaatcaaaacgaattacgagcgaattaaaaaggtcgccgattgattaatctctctctctcgcctaccggattgtcgtcctctga  17342700                                                ------------>CBF                                       --------->YAB1                                      --------->ICU4       <----------DOF2                                      <---------YAB1       <---------DAG2                        ----                                   --------->ICU4       <---------TOE1(2)                        ----                                   <---------ATHB51  --------->YAB1                             -----                                   <---------ATHB12 <<<<<<<<<ARR1                   <--------ATHB1  -    <----------ID1         <---------MYB46(3)  --------->ANAC46        --------->At4g35610      ----- -At4g35610                --------->ATHB12    --------->ANAC58   --------->HSFB2a(2)        -------- >At4g35610      --------->At4g35610--------->YAB1  <<<<<<<<<ARR2 <---------HSFB2a(2)        <------- -->RAV1(2)      <---------At4g35610*TSS       --------->ANAC58<-----------GT1--------->YAB1 --------   agctaaacgacgaagaaacagcagagaaatggttgcaataataataaacacacaatcgtagcttttttctcgacgctgaatcagaataattcaaaaatct  17342800                                                                                           --------->ZAT18        <-------GAMYB                                                                      <---------ZAT18       --------->MYB52(2)                                                                 <---------ANAC58       <---------MYB46(3)                                                          <--------P     <---------MYB52(1)                                                          <------MYB83 ----->TOE2(1)                                                                   <------MYB46(1) ----->TOE1(1)                                                             <---------AHL20(2) ---------->AtSPL3                                                         --------->AHL20(2) ------>TEIL            ---------->ID1   --------->MYB59                   <---------AHL20(1)      -- ---------->AtSPL8 <---------ZAT2      <---------MYB52(1)               --------->YAB1    <---------ANAC46 ->GLK1(2)         --------->ZAT2     <-------GAMYB                  ----------->RAV1(1)  <---------ANAC58 --ARR11(3) <---------ANAC58          <-----------HVH21   --------->ARR11(3)    --------->MYB59  ---- ->ARR11(3) <---------ANAC58   ---------->DOF2           <---------CCA1(2) --------->AHL20(1)  <-----   cgtacctgtttgttgagttccagcttggcccattaaagcccgttaggcccatttcagttatatctatcttccaacaataaatttggtagtttgcgcgctt  17342900                                                               <---------ANAC58                                                               <---------ANAC58                                    --------->ZAT2        --------->ALFIN1                            --------->ARR11(3)          --------->TGA1a                            <---------ARR11(3)          --------->O2              --------->ANAC58      <---------ZAT2      <---------O2              --------->ANAC58    ================================MYC_MYB              ------>MYB46(1)<------ZmHOX2a(2)     <-----------------AGL1   ----------->GT1   <-----------HVH21             <---------ETT(2)----------->HVH21                < ------->YAB1 ------>MYB83 --------->GLK1(1)       ----------------->AGL1      ------->TEIL     <---- ----->AHL20(2)   --------->At4g35610    ----------->GT1<---------TGA1a <---------ANAC55(2)  <------- -----DOF2    --------->ANAC46    ------->GAMYB    --------->ZAT18<-----------HVH21         ---------   ttaataagttaaaaccaagcagttgtcagagatcaacgagctcgtgtaaaatgtccacaagtgggacttgtgacccgtatgcattttttatgccattttt  17343000                                              --------->ANAC58                                              --------->ANAC58                                              --------->ANAC46                                              --------->ANAC55(2)                                              <---------ANAC55(2)                                         --------->ZAT6                                         <---------ICU4                                        <---------ATHB12                                      --------->YAB1                                   --------->TOE2(3)                                  <---------ICU4                                  <--------HAHB4     <---------ANAC58             --------->YAB1     <---------ANAC46             --------->ATHB12     <---------ANAC58            <---------ATHB12     <---------ANAC55(1)         --------->ICU4       --------->At4g35610       --------->AHL20(2) ---------ICU4               <---------ARR11(3)      <XXXXXXXXXXXXXXXXXXXXXMIR777 -------GT1                  --------->ARR11(3)     --------->YAB1         ----------->GT1 --ICU4             --------->ANAC46<---------YAB1 <---------ATHB12   <---------ANAC46   --------->At4g35610 >ICU4         --------->ARR14(2)<---------YAB1    --------->ICU4  --------->ALFIN1  --------->MYB52(1)   actaatttcgtgtaacaaatctacaaaacaagataatcattaatcactacgtaatcatctaaattcaatgtgtggtatagaaaaaaataacagatgagat  17343100                                                                                               ------                                                                                               ------                                                                               --------->ARR11(3)                      <-----------GT1      <---------AHL20(2)                  --------->GLK1(2)              <---------YAB1              <---------AHL20(1)                   <---------ARR11(3)----          <---------ARR11(3)              <---------ARR11(3)           <----------ID1          <-----          --------->ARR11(3)              --------->ARR11(3)           ----------->GT1         ------          <---------GLK1(2)          ----------->GT1                 ---------->DOF2           ------        <---------TOE1(3)         --------->YAB1                  --------->AHL20(2)      -----------        <---------TOE2(3)      ----------->RAV1(1)          ----------->GT1   --------->RVE1(1)------   ttatgtgtttaagattttgatattttaccaaaacaacaatagtatatatttgtggtatagaattgaaaataaaaagaaaaaaatctaaaaaactgacaag  17343200  Previous    Next  AGI:  At4g36800.1    Description:  RCE1 (RUB1 CONJUGATING ENZYME 1); small protein conjugating enzyme. similar to RUB1-conjugating enzyme, putative [Arabidopsis thaliana] (TAIR:AT2G18600.1); similar to RUB1-conjugating enzyme-like protein [Solanum tuberosum] (GB:ABA46772.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17577.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135); contains InterPro domain RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580) Range:  from: 17340955    to: 17342736    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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