Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <---------ATHB12                                                                     <------ZmHOX2a(2)                                                                  --------->DEAR3(1)                 <---------ANAC58                               ------>NtERF2                 <---------ANAC58                              --------->ANAC58        <---------At5g28300                                    --------->ANAC46       <-----------GT1                                         --------->ANAC58   <---------RVE1(1)                                         <---------ALFIN1                   <----  <---------GLK1(2)                                         --------->TOE1(2)                  <-----  --------->ARR11(3)                                       --------->DEAR3(2)        <---------ICU4  <---------ARR11(3)                <----------DOF2    --------->ANAC58         <---------KAN4(2) <---------RVE1(1)            <---------GLK1(2)        --------->ANAC58        --------->YAB1 <------   cagagatttttaccatcgtgcttgaaaacacagactctcttttgcctagagaaacacaagaacccacgccgatcatcccaagaataagcattagcacctt  17276200                                         --------->AtLEC2                                         --------->ANAC46                               --------->MYB59                         <---------------AGL15                         --------------->AGL15                        <-----------------AGL3                        ----------------->AGL3                        ----------------->AGL2                                   --------->HSFB2a(2)       <---------ICU4   <-----------------AG  --------->ANAC46         --------->ANAC58 <----------DOF2        <-----------------AGL1--------->ANAC58         --------->ANAC46 -----MYB52(1)     ------->GAMYB <------ZmHOX2a(1)                     --------->ANAC58       ------- -----DOF2      ----------->RAV1(1)   <-------TEIL                   ---------->DOF2       --------->ARR14(2) ---DAG2  --------->YAB1----------------->AGL1--------->ANAC58  <----------ID1   <---------HSFB2a(2)   tagctttagtaatcacagcaacagtctccaaattaggaagtccatgaaacgcaattgactcagagagagacaaaagcaactctctcgaagccaaaacctc  17276300                                                                                            <--------                               --------->MYB52(1)                            ------>ZmHOX2a(2)                             --------->MYB46(3)                            --------->ARR14(2)                             <---------MYB111(2)                           <---------ARR14(2)      <-                             <---------MYB55(2)                       ------>NtERF2       --------->GLK1(2)                             <---------MYB52(2)                      ----------->HVH21   <---------GLK1(2)                            --------->At4g35610                  --------->At4g35610     --------->ARR14(2)                            <---------At4g35610  >>>>>>>>>NAP    <---------At4g35610     <---------ARR14(2)                            --------->ZAT2     --------->ANAC46  <---------ZAT2         --------->HSFB2a(1)                            <---------ZAT2     <---------ANAC55(2)   --------->DEAR3(1) --------->HSFC1(2)                       <---------ARR14(2)      --------->ANAC58  --------->ZAT2         <---------HSFC1(2)                       --------->GLK1(2)       --------->ANAC58 ------->TEIL<------ZmHOX2a(2) -------                       --------->ARR14(2)      --------->ANAC55(2)--------->ARR14(2)    <---------HSFB2a(1)               <---------ANAC46<---------At5g28300           <---------REM1(1)    <------NtERF2 ----- -->TOE2(3) <---------MYB52(1) -------->P      --------->ANAC55(1)<---------ARR14(2) <---------At4g35610   catcgccacaatcggtttcttagagaatccagctaccgtcttctctagcacgtaagtctcttgatgcagctccgacggatcggaggcagaagattccggt  17276400                                                      =======================HOX2a_HOX2a                                                    <---------TOE2(2)                    <---------HSFB2a(2)          --------->LBD16                           <---------TOE1(2)              --------->GLK1(2)     ---------->DOF2                              <---------SPL7             --------->LBD16 ----------->GT1                                 <---------ANAC46           <---------ANAC58 -LBD16 <---------LBD16                         <------NtERF2             --------->MYB52(1)  <------ --------ANAC46       --------->YAB1   --------->ARR11(3)             <------ZmHOX2a(2)  --------->HSFB2a(2) -->LBD16<---------ANAC46              <---------ARR11(3)     ------->GAMYB <---------ANAC58  ------- ---->ALFIN1        <-----------HVH21----------->ARR10<------ZmHOX2a(1)  ------>ZmHOX2a(1)   --------   ggagagtaaatgcggagagaaccgtcataacatccagcgaagagcttggagccgtaggattcaacagcatcgatcctagcgggacaatctttgagaagct  17276500                                                                  --------->ANAC58                                                                  --------->ANAC46                                                                  --------->ANAC58                                        <---------LBD16      <-----------GT1                                     <---------GLK1(1) --------->LBD16                         --------->ARR11(3)           --------->HSFB2a(2)                         <---------ARR11(1)           <---------HSFB2a(2)                         <---------ARR11(3)          <---------LBD16      --------->YAB1     --------->ARR14(2)      <<<<<<<<<TBF1  <---------ALFIN1<-----------GT1     <---------ATHB12    <-----------ARR10      <---------------AGL15        ----------->GT1 ---At4g35610            <---------ARR14(2)     --------------->AGL15      <---------ICU4          -- -->At4g35610           <---------ARR14(1)     <-----------------AGL3   --------->YAB1          ----- ->GLK1(2)              <---------CCA1(2)      <-----------------AGL1  <-------TEIL          --------   gaaacgaatcataagcgttgtgaaccatatcttcgatcgatttctgggttcttcttctgggaatcaccacgcattcatcatgttacaaaatccaattaca  17276600                                   <-------GAMYB                                  <---------ANAC58                               --------->TOE2(2)                               <-------MYC2                               <-------MYC3              <----------ID1                               ------->MYC3              ----------->GT1     --------->ATHB12  <-----------GT1                  ----------->GT1                 --------->AHL20(2)    --------->ICU4   *TSS      ------->MYC2 --------->ICU4                 <---------AHL20(2)   <----    <---------YAB1  <---------AHL20(2)   <---------AHL20(2)                --------->AHL20(2)  <----- ----->GAMYB    <---------AHL20(2)<---------ANAC58    ---------->DOF2     --------->AHL20(2)  <------ ------>RAV1(1)<---------AHL20(2)<-------TEIL  <---------YAB1     ----------->GT1  --------->AHL20(2) ->YAB1<---------WOX13(1)<-----------GT1 --------->AHL20(2)       --------->YAB1   <---------AHL20(2)   acagagatgattgattttttatttttttcacaacgtgcgttgataaattatgaaaaaaaaggaaaaaatcgtaaaatttaaaaatttaaatgaattaagg  17276700                                                                     --------->ANAC55(2)                                                                     <---------ANAC55(2)                                                                    <---------LBD16                                                                    --------->MYB52(1)                                                                   --------->CCA1(2)                                                                 --------->ZAT2                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                        --------->ANAC46                    <xxxxxxxxxxxxxxxxsmallRNA(le3)                        --------->ANAC58                    <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxsmallRNA(i)               ----------->RAV1(2)               <xxxxxxxxxxxxxxxxsmallRNA(s)                 ------>MYB46(1)              <---------PCF2                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             <xxxxxxxxxxxxxxxxsmallRNA(i)                  <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <------NtERF2                                 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             --------->ATERF1(1)                           <xxxxxxxxxxxxxxxxxxsmallRNA(se3)            --------->LBD16        <---------At4g35610     --------->MYB52(1)            ------>NtERF2--------->LBD16                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <---------ANAC46 ------>NtERF2                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)           --------->ALFIN1------>NtERF2                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <------NtERF2<xxxxxxxxxxxxxxxxsmallRNA(le3)     ------->GAMYB          ---------->ID1         --------->LBD16--------->ANAC58                 --------->MYB46(3) <----------DOF2        <xxxxxxxxxxxxxxxxsmallRNA(s)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------LBD16 --------->TOE1(2)          ------->GAMYB  <---------ZAT2*TSS       --------->ATERF1(1)----------->HVH21     ------>MYB83------>MYB83   <---------DAG2     --------->PCF5  --------->ARR14(2)         ------>MYB46(1)<xxxxxxxxxxxxxxxxsmallRNA(s)    <-----------HVH21<---------ARR14(2)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                 <- --ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(s)      --------->MYB52(1)<---------At4g35610              --- -----ID1------>NtERF2 <---------LBD16        --------->AtMYB61<xxxxxxxxxxxxxxxxsmallRNA(i)  -------- ---TOE2(3)<---------DEAR3(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->At4g35610  <----------DOF2   acaaatggtcccggcggggctcgaacccgcgaccttcggctcataagaccaacgctctaaccaactgagctacgggaccttttgttctctttaagttcaa  17276800        <---------TOE2(3)        <---------TOE1(3)       ---------->DOF2               --------->CCA1(2)      <---------AHL20(2)  ---------->DOF2    <-----------TBP      <---------AHL20(2)     --------->At4g35610  <---------YAB1       <-----------TBP          --------->ANAC46 <---------AHL20(1)  <---------YAB1  <xxxxxxxxxxxxxxxxxsmallRNA(si3) --------->AHL20(1) <---------AHL20(1)        <---------ALFIN1                                <------ <---------AHL20(2) --------->AHL20(1)     <---------ICU4        <---------ARR11(3) <---------YAB1 --------YAB1       <---------AHL20(2)     --------->YAB1   ------------>CBF      <---------ICU4 ------>AHL20(2)  <---------YAB1  <---------TOE2(3)       --------->ANAC46        --------->YAB1 ---->CBF        --------->AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------YAB1<-----   tattatatttaaagtttaatattatatttaaagtctaagatttgatcatcacctcactagacgacaataacttctctgatttcatcataactgtatttaa  17276900                                <---------ARR14(2)                                <---------ARR11(1)                                --------->ARR11(3)                                <---------ARR11(3)                               <---------CCA1(2)                         --------->GLK1(2)                                      <---------GLK1(2)                     <------ZmHOX2a(1)                                 ----------->GT1             --                     --------->YAB1              --------->ANAC46    <-------MYC3                  <- ---AHL20(2)        ----------->GT1            --------->ZAT6        ------->MYC3             <------ ------GT1       ---------->DOF2--------->ARR14(2)           <---------ZAT6     --------->ARR14(2)<--   cttgagaaacaatagaactaaaaggataatctcatatcttcaactaataacacaaaactagtagtattacacatggtaacaatattctctcacacataca  17277000              --------->AHL20(2)              <---------AHL20(2) ------->ARR14(2)                                   --------->DAG2 --------ARR14(2)         ---------->DOF2          ---------->DOF2                  --------->YAB1 -TEIL  <---------At4g35610                   --------->YAB1                     --------->YAB1    <- ----ZmHOX2a(1)     ----------->GT1        --------->YAB1  ---------->DOF2 <----------DOF2     ------   ggatagtctctgctaattaaaaacgttacaaagtgtttggctcactaataagaaaaagaggcaaagactatttgaaactttattgatcatcaagttaacc  17277100  Previous    Next  AGI:  At4g36630.1    Description:  EMB2754 (EMBRYO DEFECTIVE 2754); binding / small GTPase regulator. similar to hypothetical protein [Vitis vinifera] (GB:CAN61039.1); similar to TVLP1 [Oryza sativa (indica cultivar-group)] (GB:ABB45382.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22848.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Citron-like; (InterPro:IPR001180) Range:  from: 17271832    to: 17276621    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g36635.1    Description:  pre-tRNA. tRNA-Ile (anticodon: TAT) Range:  from: 17276706    to: 17276779    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g36640.1    Description:  SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein. similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT1G75170.2); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT1G75170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22852.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071); contains InterPro Range:  from: 17276941    to: 17279206    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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