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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                     <<<<<<<<<<<<<<<<<LFY
                                                              <---------YAB1
                                                      <---------ATHB12
         ------>ZmHOX2a(1)           --------->MYB46(3)  ----------->GT1
        --------->TOE2(3)   <---------GLK1(2)       --------->WOX13(1)
  <---------YAB1       <----------DOF2 --------->MYB52(1)<---------TOE2(3)                   <------ZmHOX2a(1)
----ICU4--------->TOE1(3) <---------TOE2(3)   ----------->RAV1(1)---------->DOF2            <-------
 
gcactctgattccttaaatttctaaactttaggttctctaaccaatggccaacaccaattaagttataaaaagaacaatggggtttgaaaaacagaggac  17196700
                                                                                            --------
                                                                                            --------
                   <---------ZAT6                                                       --------->ARR14(2)
              --------->HSFB2a(2)                                                       <---------ARR14(2)
             <---------ANAC58                                                         --------->LBD16
             <---------ANAC46                                                        <---------HSFB2a(2)
             <---------LBD16                <-------GAMYB                            ---------------
             <---------ANAC58           <---------WRKY18(1)                          --------->HSFB2a(2)
      <-------TEIL --------->ALFIN1   <----------DOF2             <---------ANAC58   <--------------
     --------->GLK1(2)               <---------ANAC58             <---------ANAC46  ----------------
    <---------ARR14(2)               <---------ANAC58             <---------ANAC58  <---------LBD16
    --------->ARR14(2)         <---------ANAC46             --------->ALFIN1        ----------------
    <---------GLK1(2)          <---------ANAC58          <-----------RAV1(1)       --------->MYB52(1)
--ZAT18     <---------LBD16    <---------ANAC58       <---------ARR14(2)           -------->P
 
ttactcagattcagtttcgggagtggtaagagaagcgtgtgcttgagcgttggagacgaactggtggaggcttggaccatcaaacttaccggaactagca  17196800
                                                                                      --------->ANAC58
                              <---------TOE2(3)                                       --------->ANAC58
                              <---------TOE1(3)                                      <---------LBD16
                          --------->CCA1(2)                                          --------->SPL7
                         --------->ARR11(3)                                      <---------------AtSPL3
                         <---------ARR11(3)                                    <---------ZAT2
                  <---------HSFC1(1)                                           --------->At4g35610
                  --------->HSFC1(1)<---------ARR14(2)                         <---------At4g35610
->ANAC58          <---------HSFB2a(2)           ==============HOX2a_HOX2a     --------->ALFIN1
->ANAC58          --------->HSFB2a(2)           ------>ZmHOX2a(1)           <---------ANAC58
>AGL15       --------->HSFC1(2)    <---------HSFB2a(1)           <-----------HVH21<---------At4g35610
-AGL15       <---------HSFB2a(1)   --------->HSFB2a(1) ------>ZmHOX2a(2)    <---------ANAC58
->AGL1       <---------HSFC1(2) <------ZmHOX2a(1)   --------->ATHB12       <---------MYB46(3)
->AGL2       --------->HSFB2a(1)==============================HOX2a_HOX2a  --------->MYB55(2)
 
atttgagaaatagagaagcttctagaaagatttaaggaaaatcccttcttcctattgatcggtttctgtgtgagacgatgggtgctgctacggcaacgag  17196900
                                    <----------DOF2                              <----------DOF2
                                   <---------ANAC46                      <---------ZAT14
                                   <---------ANAC58                      --------->REM1(2)
                                   <---------ANAC58                      --------->ZAT14
          <------ZmHOX2a(1)     <--------P <------ZmHOX2a(1)            <---------ANAC46
       --------->At4g35610     <---------ANAC58   --------->GLK1(2)   <---------ANAC46             -
    --------->At4g35610        <---------ANAC58 <------ZmHOX2a(1)    <---------MYB52(1)            =
 
ggagaagagcagaggaagaagatgaagaagcatgggttgcttttgaggagaggaatctaagagcgaaacaacgttgtgtagaggctttgaaacagagaga  17197000
                                                                                    --------->AtMYB61
                                                                                    <---------ALFIN1
                                                                                  ----------->RAV1(1)
                                <---------TGA1a ------>NtERF2                    --------->ANAC46
        ==================================MYC_MYB                                <---------ALFIN1<--
        <-------GAMYB         --------->CCA1(2) <<<<<<<<<<<<<<<<<LFY     ---------->DOF2         ---
 --------->YAB1         <------ZmHOX2a(1)      --------->ANAC58     <---------GLK1(1)            <--
<---------ATHB12 <------ZmHOX2a(1)             --------->ANAC58     --------->GLK1(1)        -------
--------->MYB46(3)    <---------TOE2(3)        --------->RAP2.6(2)  <---------At4g35610   --------->MYB52(1)
------->P      <---------TOE2(3)<---------O2   --------->ANAC46     --------->At4g35610  --------->MYB46(3)
==========================================MYC_MYB                 <------ZmHOX2a(1)--------->ANAC46
 
gcaaccatgagggttactgaggattgaggagagagacgagagagaagaagacgccattggagagattgaggagctccaaagtctccaccacaacaacgga  17197100
                                        --------->AHL20(2)
                                 *TSS   ---------->DOF2                      <---------ICU4
                               --------->ANAC46  <---------ANAC46            <------------CBF
                          <---------ARR11(3)    <------NtERF2               --------->ICU4
-------HSFB2a(1)          --------->ARR11(3)--------->ANAC58           ----------->GT1         <----
------>HSFB2a(1)          <-----------ARR10 --------->ANAC58         --------->LBD16          <-----
-------HSFC1(2)           --------->GLK1(2) --------->ANAC46       <---------LBD16            <-----
>GAMYB              <-----------GT1------------>CBF                <-----------RAV1(2)        ------
 
aggctctctcaagcttagggattttacaaaatctactccacaataaaacgcagcgtttagttatccaaactcaggggtaatattgacattcgctctcagc  17197200
                                                --------->ALFIN1
                             <------MYB46(1)  <---------ANAC46                                   <--
                 =======================================MYC_MYB                                -----
                --------->MYB46(3)            <---------TGA1a                            <---------LBD16
          ==============================================bZIP_DOF                        <---------LBD16
      ---------->ID1       <---------------------WRI1                                   ------>ZmHOX2a(2)
  <---------DAG2<---------MYB52(2)            --------->O2                             <------ZmHOX2a(2)
  <----------DOF2------->GAMYB                <---------O2         <---------YAB1     --------->ARR14(2)
-----GLK1(2)   <---------TOE2(3)              <---------ANAC58  --------->ICU4        <---------ARR14(2)
----At4g35610 *TSS ------->TEIL               <---------ANAC58--------->YAB1          <---------ARR11(3)
----ZAT2  <----------DOF2<-----------RAV1(1)  <---------bZIP60(2)--------->YAB1       --------->ARR11(3)
--->At4g35610 <-----------GT1<------MYB83    <-----------------------TaNAC69(2)     ----------->ARR10
 
ttctgctttatcgcttttaacgaacattttgttggtaagaacgaagaagacgtggagaagtagaagaatgatgatgcagaaattgagaagatcgggggag  17197300
                                      ------>MYB83
                                    --------->MYB46(3)
                                 ------>NtERF2
                                 --------->ORA47(1)
                               --------->ATERF1(1)
                   --------------->AGL15
                --------->ARR14(2)  --------->AtMYB61                     --------->ARR11(3)
     --------->CCA1(2)         --------->DEAR3(2)                  >>>>>>>GRF7
    --------->ARR11(1)        --------->At4g35610                 <-----------RAV1(2)
    --------->ARR11(3)   <---------ICU4                         <-----------HVH21
    <---------ARR14(2)  --------->ICU4------>MYB46(1)          ----------->HVH21
  ----------->ARR10<---------------AGL15    <------ZmHOX2a(1)<---------ANAC46           <----------DOF2
-----TEIL       <---------ARR14(2)  <---------MYB59     --------->ANAC55(2) ------>ZmHOX2a(2)
---->GLK1(1)   <---------CCA1(2)--------->DEAR3(1)  <-----------HVH21     <---------ARR11(3)
 
ttcataagatttggatgcaaatctctaattagtagccgaccaaacaaggactcagtgtcacgttctgtgtcaggtttgatctccaatttgacttttgtaa  17197400
                                    <----------DOF2                          <----------DOF2
                       --------->AHL20(1)                      --------->AHL20(2)
                       <---------AHL20(2)                      --------->AHL20(1)
                       --------->AHL20(2)                      <---------AHL20(2)                ---
                      --------->AHL20(2)     --------->YAB1   --------->AHL20(2)                 ---
                 ----------->GT1   <---------ANAC58      ----------->GT1    <---------ANAC58     <--
         <------ZmHOX2a(2)         <---------ANAC58    --------->At4g35610  <---------ANAC58  <-----
       <---------GLK1(1)       <----------DOF2         --------->CCA1(2)<----------DOF2       ------
 
ttagattgagagatcagagatggaaaaaaattgactttgcttttgtaattagaatgagagatgaaaaaaattgaactttgcttttgtaattagataaaaa  17197500
           <----------DOF2
      <----------DOF2
     ------>ZmHOX2a(2)                                        --------->ARR14(2)
     ==================================HOX2a_HOX2a     <---------GLK1(1)
   --------->ARR11(3)                         <---------AHL20(2)      <---------MYB46(3)
   <---------ARR11(3)                        <---------YAB1   ------->TEIL
------>ARR11(3)                           <---------YAB1     <---------CCA1(2)
------>AHL20(1)                     <---------TOE2(3)  --------->CCA1(2)
-------AHL20(1)                 <------ZmHOX2a(1)     --------->ARR14(2)
----AHL20(2)                  <---------TOE2(3)       <---------ARR14(2)      --------->ATHB12
--->AHL20(2)           <-----------------AG <---------AHL20(2)<---------ARR14(2)           <--------
 
aatattgatcttttctttagaaacttgacattttaggataagattatttttattttggatatgtgtatcttattggttgaattatgggtttaggctttgt  17197600
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AGI:  At4g36390.1   
Description:  radical SAM domain-containing protein / TRAM domain-containing protein. Identical to CDK5RAP1-like protein [Arabidopsis Thaliana] (GB:Q8H0V1;GB:O23241); similar to radical SAM domain-containing protein / TRAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G72090.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73510.1); similar to hypothetical protein OsJ_033147 [Oryza sativa (japonica cultivar-group)] (GB:EAZ18938.1); similar to similar to CDK5 regulatory subunit-associated protein [Nicotiana tabacum] (GB:BAD15110.2); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Elongator protein
Range:  from: 17194591    to: 17197134    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At4g36400.1   
Description:  FAD linked oxidase family protein. similar to FAD linked oxidase family protein [Arabidopsis thaliana] (TAIR:AT5G06580.1); similar to putative actin interacting protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79943.1); similar to hypothetical protein OsJ_022439 [Oryza sativa (japonica cultivar-group)] (GB:EAZ38956.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48288.1); contains InterPro domain FAD-binding, type 2; (InterPro:IPR016166); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain FAD-linked oxidase-like, C-terminal; (InterPro:IPR016164); contains InterPro doma
Range:  from: 17197215    to: 17200910    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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