Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------TOE2(3)    <---------ATHB12 -------->MYB46(3)                        ------->TEIL ---------MYB55(2)     <------ZmHOX2a(1) <---------ARR14(1)                                        <- ------->ANAC58     <---------LBD16  --------->GLK1(2) --------->ARR14(2)                      <----- ------->ANAC58     <---------HSFB2a(2)  <---------CCA1(2) <---------At5g28300             <---------ATHB12 ------->ANAC46     --------->HSFB2a(2)  <---------GLK1(2)<-----------GT1    ---------->DOF2--------- -->DOF2 <---------ARR14(2)--------->ZAT18<---------ARR11(1)          --------->ANAC46   --------->WOX13(1)   cacccaatgaggttccaaaattcgaggaatgcacaagagaatcgaatctctatctcagatttacagccaaataagacacaaaagcattgctcaatcagat  16568900                                                                                                   --                                                                                                   --                                                                ---------->DOF2                    --                                                             --------->TOE2(3)                  -----                                                       <------ZmHOX2a(2)                        <----                                                      --------->ARR14(2)                     --------                     <---------ARR14(2)               <---------ARR14(2)                    <------ZmHOX2a(2)                     --------->ARR14(2)   ====================HOX2a_HOX2a              --------->YAB1    --------->At4g35610     ---------->DOF2  <---------YAB1  --------->TOE1(3)      --------->WOX13(1) ----------GT1      <---------CCA1(2)     ------>ZmHOX2a(1)  <---------MYB59     --------->ARR11(3)-- ----GLK1(2)      --------->YAB1<-----------GT1       <-----------ARR10         <---------CCA1(2)  -- >YAB1           <---------ATHB12        --------->TOE2(3) ------->TEIL     <----------DOF2<---------ARR11(3)   tttactagctcaaatgcaaatcatatcccataaatcaccaattccttatttttgcagatcgaacctaaaagactcattctttatatctatcacgatcata  16569000      ----------->GT1 ------->ANAC55(2) ------->ANAC55(1) ------->ANAC58                      ------>ZmHOX2a(2) ---->ARR14(2)                      <------ZmHOX2a(2) -----ARR14(2)                     <---------ARR11(3) ->YAB1                            --------->ARR11(3) ------->ANAC46    --------------->AGL15                 <------ZmHOX2a(2)                   <------ZmHOX2a(1) ------->ANAC58   <-----------------AGL1      ---------->DOF2   ----------->GT1           <----------   tacgcaatctgtaacaaatttcagaaaatgggaacacgatctcacgaagaaagaaacagatcaaaatgggaaaacagagagaaaatgaaattacaggaga  16569100                   --------->LBD16                   ------>NtERF2                  --------->DEAR3(1)                  <---------ANAC46                 <------NtERF2                ------>NtERF2               --------->DEAR3(1)              --------->ATERF1(1)              --------->At4g35610              <---------At4g35610             <---------ATERF1(1)           <---------ZAT2           <------NtERF2           <---------ZAT14           <---------At4g35610                                                           ------>ZmHOX2a(2)        --------->At4g35610                                                             <------ZmHOX2a(2)        <---------At4g35610                          <----------CDC5            ------->TEIL       <---------RAP2.3(1)                          --------->At4g35610         <---------ARR14(2)       <---------ATERF1(1)                          ------>NtERF2               --------->ARR14(2)      <---------RAP2.6(2)             <---------ZAT2<---------At4g35610        <---------CCA1(2)      <---------RAP2.3(2)             --------->At4g35610              <------NtERF2   <---------ARR11(3)      <---------DEAR3(1) --------->At4g35610       --------->DEAR3(1)<---------ANAC46  --------->ARR11(3)    --------->ALFIN1  <------ZmHOX2a(1)         --------->DEAR3(1) <-----------HVH21   --------->AGP1 -RAV1(2)  --------->At4g35610        <---------At4g35610------->TEIL--------->ETT(1) --------->GLK1(1)   aaacgagtgcggctgcagcgccgaggaagccgaagaagggagctgtttcatcgccgctgaacgtagacatgtcggagttttgtatctgagatcttaaatc  16569200                                                                           ---------->ID1                                                                          <-------GAMYB                                                                         <---------MYB46(3)                                                                         --------->MYB52(2)                                                                --------->AHL20(2)                      <---------ANAC46                          <---------AHL20(2)                      <---------ANAC58                     --------->AHL20(2)                --------->GLK1(2)                          <---------AHL20(2)                --------->ARR11(3)                         <---------AHL20(1)                --------->ARR14(2)         --------->CCA1(2)   <---------AHL20(2)                   *TSS                <---------ARR11(3)        <---------ARR11(3)--------->AHL20(2)                <------                <---------ARR14(2) --------->At4g35610     --------->AHL20(1)                --------            --------->YAB1         --------->CCA1(2)<-------GAMYB    <---------YAB1       --------->At4g35610 <<<<<<<<<<GATA-1     <---------ANAC58    --------->ARR11(3)<---------AHL20(2)            <---------At4g35610   tgaaatcgagtcgatgaaaatctggcgagagagagagagatgaagatatatcgctgttgaatttatttattttgtttgttgtttttgttttcagatgagt  16569300                                       <-----------TGA1                                      --------->O2                                      <---------O2                                      --------->TGA1a                                      <---------bZIP60(1)                                      --------->bZIP60(1)                                      ==========================================bZIP_DOF                                      --------->bZIP60(2)                                      --------->ANAC46                                      --------->ANAC55(2)                                      --------->ANAC55(1)                                      <---------ANAC55(2)                                      --------->ANAC58                     ----------->GT1  --------->ANAC58                     --------->ANAC55(2)                     <---------ANAC55(2)         <---------ANAC58                     <---------HSFB2a(2)         <---------ANAC58                     --------->HSFB2a(2)   --------->ICU4              <---------ANAC58       <-----------STF1                     ------------>CBF        <-- ---ANAC46    <---------ANAC46      <---------ALFIN1           <---------TOE2(3)       --------->CCA1(2) ->ATHB12     <---------ANAC58<------ZmHOX2a(1)  <---------ANAC46    ---------->DOF2  --------->ARR11(3)   ggaagggaacaacgctgcttgttctgtaacaaggacgaccacgtcattttggcttgggcctattttagattaaaagcccaatttctaagataccgatgta  16569400                                                                                <---------ATHB12                                                                                ----------->HVH21                                                                          <---------PCF2                                                                       --------->ANAC55(2)                                                                       <---------ANAC55(2)   --------                                                                      <-----------------------TaNAC69(2)                                                                      <-------TEIL         --------->ANAC58                                                                     --------->ARR14(1)    --------->ANAC46                                                                     --------->CCA1(2)     --------->ANAC58        --------->TOE2(3)                                           --------->ARR11(1)    <-------TEIL      >>>>>>>>>MYB98        <---------YAB1                          <---------ARR14(2)    <---------ZAT14  --------->ANAC55(2)  <------MYB46(1)                            ----------->ARR10       --------->ZAT14  --------->ANAC46     <------MYB83                          <-------TEIL <---------PCF5  <---------ZAT18 -------ZAT6          --------->MYB59                <-----------GT1--------->ARR14(2)    --------->ZAT18   gtataagtaacataaacaatggattaggttctgatttttgtttgggcctaaaatgttactgcatacatgagatacgggcccaatgacacaagtacacaac  16569500                                                                                 <------ZmHOX2a(1)                                                                           ------>MYB83                                                                           ------>MYB46(1)                                                                         <---------MYB46(2)                                                                         --------->AtMYB61                          <---------MYB52(1)                             --------->MYB46(3)                        ----------->GT1                ----------->HVH21 <---------MYB111(1)                     --------->GLK1(2)               --------->At4g35610--------->ANAC58                     --------->ARR14(2)              <---------At4g35610--------->ANAC46                     <---------ARR14(2)              --------->ZAT2     --------->ANAC58         --------->ARR14(2)                          <---------ZAT2   --------->ZAT6 ->ANAC46<---------ARR14(2)                  --------->ICU4     --------->ZAT6  <----------ID1   ----   tcatctaggcatatatgaaaccgaatcggttaatttctacttgagtcattgtgagagctgacattaactgtaacaccaaacaaggacaaaacattgaaac  16569600                                                                            --------->LBD16                                                                           --------->LBD16                                                                          --------->LBD16                                                                        ------>ZmHOX2a(2)                                                                       <------ZmHOX2a(2)                                                                      <---------ARR11(3)                                                                      <---------ARR14(2)                          ------>MYB46(1)                             --------->ARR11(3)                          ------>MYB83                                --------->ARR14(2)                        <---------MYB59                              --------->GLK1(1)          <----                        --------->AtMYB61                   <-----------RAV1(1)               -------               --------->At4g35610    --------->YAB1 <-----------GT1 <---------GLK1(1)        <------ ----->MYB52(1)<---------At4g35610--------->ZAT6     --------->YAB1 ----------->ARR10   ---------->DOF2   aacgaggcagaaacttgagctcatgaccaaacccttacactgatattatccaaaataacaatttgttggagagatccccgagtaatggaccaaagaagct  16569700                  --------->MYB46(3)                  <---------MYB111(1)                  <---------MYB52(2)                  <---------MYB111(2)           --------->ICU4         <---------ICU4                                ------>NtERF2        --------->ICU4                      <---------ARR14(2)      --------->YAB1-------->P              --------->ARR14(2)                    --------->ANAC46<-- ------DOF2<---------YAB1                  <---------MYB52(1)                   --------->ANAC46 ---- -->HSFC1(2)      <---------MYB46(2)      --------->LBD16               <---------MYB111(2)     <---- ---HSFC1(2) ----------->GT1            <---------LBD16--------->LBD16  --------->MYB46(3)      -----   ttcaggcttcataatgagtaactaccatcggtattcatcttctccggttctccattccgccttagtcttgtccaacaacttcacacaaaacatggaaaat  16569800  Previous    Next  AGI:  At4g34720.1    Description:  AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1); ATPase/ hydrogen ion transporting ATPase, rotational mechanism. Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (AVAP5) [Arabidopsis Thaliana] (GB:P59227;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) [Arabidopsis thaliana] (TAIR:AT2G16510.1); similar to ATVHA-C3/AVA-P3 (vacuolar-type H(+)-ATPase C3), ATPase [Arabidopsis thaliana] (TAIR:AT4G38920.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78114.1); contains InterPro domain ATPa Range:  from: 16567829    to: 16569300    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g34730.1    Description:  ribosome-binding factor A family protein. Identical to Probable ribosome-binding factor A, chloroplast precursor [Arabidopsis Thaliana] (GB:O65693;GB:Q8H0V9); similar to unnamed protein product [Vitis vinifera] (GB:CAO47263.1); contains InterPro domain K homology-like, alpha/beta (InterPro:IPR015946); contains InterPro domain Ribosome-binding factor A; (InterPro:IPR000238) Range:  from: 16569401    to: 16573685    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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